Wall clock time and date at job start Tue Mar 31 2020 19:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00242 * 2 1 4 4 H 1.48499 * 109.47281 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47421 * 120.00270 * 3 2 1 6 6 H 1.48503 * 109.47066 * 240.00359 * 3 2 1 7 7 C 1.37877 * 119.99500 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00271 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47132 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46994 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47638 * 305.00074 * 11 10 9 13 13 N 1.46896 * 109.47246 * 65.00009 * 11 10 9 14 14 C 1.50703 * 109.46923 * 185.00156 * 11 10 9 15 15 O 1.21285 * 119.99551 * 259.99735 * 14 11 10 16 16 N 1.34774 * 120.00380 * 80.00261 * 14 11 10 17 17 C 1.47084 * 120.87904 * 354.09269 * 16 14 11 18 18 C 1.53234 * 108.52469 * 128.81625 * 17 16 14 19 19 N 1.46905 * 109.33727 * 53.82794 * 18 17 16 20 20 C 1.46897 * 111.26880 * 296.89751 * 19 18 17 21 21 C 1.47081 * 120.88463 * 173.81164 * 16 14 11 22 22 H 1.08995 * 109.62653 * 111.47142 * 21 16 14 23 23 C 1.50700 * 109.62778 * 350.89128 * 21 16 14 24 24 C 1.38267 * 119.98652 * 113.41452 * 23 21 16 25 25 C 1.38219 * 120.04944 * 180.02562 * 24 23 21 26 26 C 1.38220 * 120.02593 * 359.95309 * 25 24 23 27 27 C 1.38431 * 119.97539 * 0.02749 * 26 25 24 28 28 F 1.35102 * 120.02257 * 179.97438 * 27 26 25 29 29 C 1.38181 * 119.98604 * 293.14543 * 23 21 16 30 30 H 0.96998 * 119.99509 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.46673 * 299.99447 * 9 7 2 32 32 H 1.08993 * 109.47426 * 59.99768 * 9 7 2 33 33 H 1.08995 * 109.47231 * 299.99731 * 10 9 7 34 34 H 1.09002 * 109.46867 * 59.99938 * 10 9 7 35 35 H 1.00900 * 111.00224 * 296.05055 * 13 11 10 36 36 H 1.00901 * 110.99829 * 60.00083 * 13 11 10 37 37 H 1.09002 * 109.62303 * 248.53153 * 17 16 14 38 38 H 1.09000 * 109.63020 * 9.10240 * 17 16 14 39 39 H 1.09003 * 109.49340 * 173.78691 * 18 17 16 40 40 H 1.09000 * 109.49233 * 293.84059 * 18 17 16 41 41 H 1.00900 * 110.99768 * 172.74649 * 19 18 17 42 42 H 1.08998 * 109.49206 * 183.07029 * 20 19 18 43 43 H 1.09004 * 109.48810 * 303.11598 * 20 19 18 44 44 H 1.07995 * 119.97217 * 0.02562 * 24 23 21 45 45 H 1.08003 * 119.98565 * 179.97438 * 25 24 23 46 46 H 1.08007 * 120.00740 * 180.02562 * 26 25 24 47 47 H 1.07999 * 120.01506 * 359.97438 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1030 1.6963 1.2124 6 1 3.1029 1.6963 -1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2451 -3.6621 -0.0027 11 6 1.4801 -4.9871 -0.0033 12 1 0.7882 -5.0076 0.8387 13 7 0.7279 -5.1177 -1.2583 14 6 2.4547 -6.1299 0.1196 15 8 2.7861 -6.7529 -0.8669 16 7 2.9580 -6.4598 1.3255 17 6 2.6717 -5.6402 2.5128 18 6 2.1609 -6.5595 3.6273 19 7 3.1250 -7.6471 3.8410 20 6 3.2525 -8.4891 2.6441 21 6 3.8030 -7.6523 1.4904 22 1 4.8248 -7.3484 1.7176 23 6 3.7828 -8.4663 0.2223 24 6 4.9328 -8.5952 -0.5344 25 6 4.9157 -9.3411 -1.6980 26 6 3.7489 -9.9597 -2.1058 27 6 2.5971 -9.8317 -1.3488 28 9 1.4559 -10.4356 -1.7468 29 6 2.6165 -9.0881 -0.1807 30 1 -0.4849 0.8401 0.0004 31 1 0.6240 -2.5574 0.8881 32 1 0.6246 -2.5563 -0.8919 33 1 2.8718 -3.6037 -0.8926 34 1 2.8718 -3.6052 0.8873 35 1 0.0232 -4.3996 -1.3339 36 1 1.3475 -5.1016 -2.0545 37 1 3.5827 -5.1392 2.8401 38 1 1.9096 -4.8993 2.2712 39 1 2.0483 -5.9870 4.5481 40 1 1.1968 -6.9789 3.3396 41 1 2.8739 -8.1998 4.6469 42 1 3.9314 -9.3160 2.8517 43 1 2.2734 -8.8823 2.3702 44 1 5.8451 -8.1128 -0.2161 45 1 5.8145 -9.4408 -2.2885 46 1 3.7360 -10.5428 -3.0149 47 1 1.7196 -8.9912 0.4130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424178607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:52 Heat of formation + Delta-G solvation = -60.351731 kcal Electronic energy + Delta-G solvation = -30118.836489 eV Core-core repulsion = 26022.138497 eV Total energy + Delta-G solvation = -4096.697992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.85347 -41.95286 -39.61283 -38.64280 -37.09284 -34.90093 -34.72980 -33.74647 -31.69922 -31.42104 -30.32940 -28.58905 -27.36125 -25.63628 -24.97548 -23.74583 -22.72386 -22.58628 -21.50792 -19.98057 -19.04244 -18.39542 -17.93800 -17.46773 -17.11989 -16.92658 -16.71273 -16.58388 -16.49232 -16.13067 -15.74256 -15.62138 -15.58322 -15.20779 -14.85603 -14.69931 -14.57962 -14.26339 -14.00910 -13.81301 -13.60589 -13.42592 -13.11532 -12.93414 -12.87512 -12.69178 -12.55464 -12.49434 -12.29387 -12.26277 -11.80591 -11.79150 -11.64958 -11.31747 -10.86217 -10.55552 -9.95349 -9.72172 -9.61388 -9.31015 -9.19658 -8.21050 -6.31555 0.28781 0.37190 1.40486 1.41775 1.49750 1.63803 1.88793 2.40242 2.75310 3.05228 3.12692 3.35526 3.46838 3.71474 3.75070 3.78135 3.91541 4.02693 4.05099 4.13202 4.17836 4.23240 4.31238 4.34777 4.36616 4.49954 4.63381 4.65092 4.79129 4.82548 4.85206 4.93355 5.00609 5.07453 5.16679 5.24374 5.38863 5.45528 5.46165 5.58751 5.64134 5.80089 5.86205 6.03388 6.05895 6.20824 6.32043 6.43662 6.45709 6.83449 7.19064 7.37698 8.89433 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.013870 B = 0.003252 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.214523 B = 8607.503763 C = 9506.433001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.957 3.043 4 H -0.284 1.284 5 H -0.266 1.266 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.033 3.967 10 C -0.118 4.118 11 C 0.082 3.918 12 H 0.099 0.901 13 N -0.830 5.830 14 C 0.521 3.479 15 O -0.530 6.530 16 N -0.609 5.609 17 C 0.102 3.898 18 C 0.046 3.954 19 N -0.684 5.684 20 C 0.056 3.944 21 C 0.186 3.814 22 H 0.099 0.901 23 C -0.021 4.021 24 C -0.126 4.126 25 C -0.085 4.085 26 C -0.166 4.166 27 C 0.075 3.925 28 F -0.158 7.158 29 C -0.130 4.130 30 H 0.264 0.736 31 H 0.002 0.998 32 H -0.001 1.001 33 H 0.042 0.958 34 H 0.067 0.933 35 H 0.351 0.649 36 H 0.343 0.657 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.032 0.968 41 H 0.362 0.638 42 H 0.108 0.892 43 H 0.030 0.970 44 H 0.142 0.858 45 H 0.157 0.843 46 H 0.143 0.857 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.274 -20.011 6.852 23.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.782 3.218 4 H -0.209 1.209 5 H -0.190 1.190 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.073 0.927 9 C -0.004 4.004 10 C -0.158 4.158 11 C -0.033 4.033 12 H 0.117 0.883 13 N -0.361 5.361 14 C 0.309 3.691 15 O -0.407 6.407 16 N -0.344 5.344 17 C -0.020 4.020 18 C -0.084 4.084 19 N -0.317 5.317 20 C -0.074 4.074 21 C 0.083 3.917 22 H 0.116 0.884 23 C -0.022 4.022 24 C -0.144 4.144 25 C -0.103 4.103 26 C -0.185 4.185 27 C 0.056 3.944 28 F -0.137 7.137 29 C -0.149 4.149 30 H 0.072 0.928 31 H 0.020 0.980 32 H 0.017 0.983 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.165 0.835 36 H 0.156 0.844 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.129 0.871 40 H 0.050 0.950 41 H 0.182 0.818 42 H 0.126 0.874 43 H 0.048 0.952 44 H 0.159 0.841 45 H 0.174 0.826 46 H 0.161 0.839 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 9.549 -20.578 6.459 23.588 hybrid contribution -0.950 1.594 -0.508 1.924 sum 8.599 -18.984 5.951 21.674 Atomic orbital electron populations 1.70057 1.07505 1.27804 1.51285 1.25845 0.95687 1.02908 0.94710 0.85615 0.78395 0.78682 0.79068 1.20902 1.19038 1.19744 1.21568 0.93312 0.92371 1.50955 0.92705 1.18935 0.93934 0.92022 0.95538 1.22132 0.98723 0.93642 1.01316 1.21404 0.94728 0.91873 0.95283 0.88306 1.58763 1.18372 1.55560 1.03383 1.20659 0.81103 0.84416 0.82920 1.90741 1.59987 1.52647 1.37311 1.48249 1.51046 1.26924 1.08132 1.22117 1.02426 0.93394 0.84098 1.22327 0.92911 0.93732 0.99479 1.60204 1.51326 1.14332 1.05857 1.22228 1.00366 0.95170 0.89639 1.20202 0.95692 0.83942 0.91827 0.88358 1.19315 0.93056 0.94468 0.95406 1.21165 0.98160 0.99836 0.95278 1.21174 0.97849 0.95313 0.95962 1.21244 0.92131 1.03933 1.01194 1.17862 0.82599 0.97837 0.96070 1.91429 1.49604 1.81848 1.90796 1.20624 0.98599 0.99361 0.96342 0.92756 0.97989 0.98300 0.93962 0.91480 0.83473 0.84418 0.89679 0.89293 0.87148 0.94979 0.81757 0.87373 0.95221 0.84069 0.82584 0.83877 0.87357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.00 13.29 21.45 0.28 -53.71 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.96 42.94 29.54 68.60 2.03 44.96 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.54 -29.54 9.11 25.60 0.23 -29.31 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.03 1.60 4.74 29.85 0.14 1.74 16 10 C -0.12 -4.58 4.48 30.59 0.14 -4.44 16 11 C 0.08 2.78 2.35 44.17 0.10 2.88 16 12 H 0.10 3.22 6.81 -2.39 -0.02 3.20 16 13 N -0.83 -29.33 8.94 -171.80 -1.54 -30.87 16 14 C 0.52 16.61 6.49 87.66 0.57 17.18 16 15 O -0.53 -19.02 11.74 -3.04 -0.04 -19.05 16 16 N -0.61 -15.35 3.01 -799.10 -2.41 -17.76 16 17 C 0.10 2.21 5.65 86.35 0.49 2.70 16 18 C 0.05 0.75 6.70 86.38 0.58 1.33 16 19 N -0.68 -9.91 6.82 -513.85 -3.50 -13.41 16 20 C 0.06 0.93 5.81 86.23 0.50 1.43 16 21 C 0.19 3.97 3.24 44.06 0.14 4.11 16 22 H 0.10 1.94 7.91 -2.39 -0.02 1.92 16 23 C -0.02 -0.52 2.77 -19.87 -0.06 -0.57 16 24 C -0.13 -2.76 9.33 22.27 0.21 -2.55 16 25 C -0.09 -1.77 10.04 22.26 0.22 -1.54 16 26 C -0.17 -3.99 10.03 22.31 0.22 -3.76 16 27 C 0.08 2.17 7.30 22.37 0.16 2.33 16 28 F -0.16 -4.89 17.27 44.97 0.78 -4.12 16 29 C -0.13 -3.63 6.77 22.31 0.15 -3.48 16 30 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 31 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.00 -0.07 6.87 -2.39 -0.02 -0.08 16 33 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 2.45 6.82 -2.39 -0.02 2.43 16 35 H 0.35 12.64 7.55 -89.69 -0.68 11.96 16 36 H 0.34 12.41 8.58 -89.69 -0.77 11.64 16 37 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.09 2.14 5.08 -2.39 -0.01 2.13 16 39 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.36 3.65 8.90 -89.69 -0.80 2.85 16 42 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.03 0.56 6.76 -2.38 -0.02 0.55 16 44 H 0.14 2.47 7.97 -2.91 -0.02 2.44 16 45 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 46 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 47 H 0.11 3.16 7.08 -2.91 -0.02 3.14 16 Total: -1.00 -66.69 373.53 -1.35 -68.04 By element: Atomic # 1 Polarization: 38.24 SS G_CDS: -1.22 Total: 37.02 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 4.27 Total: -11.10 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -7.16 Total: -115.74 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.04 Total: -19.05 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.78 Total: -4.12 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -66.69 -1.35 -68.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424178607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.686 kcal (2) G-P(sol) polarization free energy of solvation -66.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds