Wall clock time and date at job start Tue Mar 31 2020 18:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99857 * 2 1 4 4 C 1.50697 * 109.47118 * 180.02562 * 3 2 1 5 5 N 1.30015 * 127.33479 * 89.97274 * 4 3 2 6 6 O 1.20658 * 112.30141 * 180.02562 * 5 4 3 7 7 C 1.33498 * 113.15746 * 0.02562 * 6 5 4 8 8 C 1.37365 * 106.34206 * 0.25967 * 7 6 5 9 9 C 1.47397 * 128.56882 * 179.70681 * 8 7 6 10 10 O 1.21601 * 120.00025 * 172.29233 * 9 8 7 11 11 N 1.34776 * 119.99638 * 352.28549 * 9 8 7 12 12 C 1.47352 * 125.70574 * 2.30277 * 11 9 8 13 13 C 1.54647 * 105.13477 * 204.81276 * 12 11 9 14 14 H 1.09001 * 113.79580 * 199.26513 * 13 12 11 15 15 C 1.54454 * 108.63964 * 71.44915 * 13 12 11 16 16 C 1.54108 * 104.73498 * 216.46350 * 15 13 12 17 17 C 1.53724 * 106.67069 * 23.40828 * 16 15 13 18 18 H 1.08998 * 109.91550 * 239.75726 * 17 16 15 19 19 N 1.46492 * 109.91523 * 118.66607 * 17 16 15 20 20 C 1.36931 * 120.00480 * 159.64943 * 19 17 16 21 21 H 1.08001 * 120.00127 * 359.97438 * 20 19 17 22 22 C 1.38807 * 120.00358 * 180.02562 * 20 19 17 23 23 N 1.31615 * 120.00154 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 120.00164 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47278 * 59.99285 * 24 22 20 26 26 H 1.48496 * 109.47243 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46660 * 299.99546 * 24 22 20 28 28 C 1.53918 * 107.08029 * 359.11475 * 17 16 15 29 29 H 1.09002 * 112.91877 * 215.04574 * 28 17 16 30 30 C 1.47038 * 125.70111 * 181.98800 * 11 9 8 31 31 H 1.09003 * 109.47139 * 300.00410 * 1 2 3 32 32 H 1.09003 * 109.47299 * 60.00422 * 1 2 3 33 33 H 1.08998 * 109.47321 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47161 * 59.99955 * 3 2 1 35 35 H 1.09003 * 109.46884 * 299.99867 * 3 2 1 36 36 H 1.07995 * 126.83160 * 180.02562 * 7 6 5 37 37 H 1.09006 * 110.30848 * 323.72885 * 12 11 9 38 38 H 1.09007 * 110.31010 * 85.79574 * 12 11 9 39 39 H 1.08997 * 110.38725 * 335.28314 * 15 13 12 40 40 H 1.09008 * 110.38383 * 97.53943 * 15 13 12 41 41 H 1.08994 * 110.01878 * 142.71435 * 16 15 13 42 42 H 1.09004 * 110.01929 * 264.10701 * 16 15 13 43 43 H 0.97006 * 119.99783 * 339.64812 * 19 17 16 44 44 H 0.97001 * 120.00497 * 179.97438 * 23 22 20 45 45 H 1.09005 * 109.82515 * 297.26133 * 30 11 9 46 46 H 1.08997 * 109.82263 * 58.21754 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2981 1.1240 -1.0347 6 8 5.4598 1.0316 -0.7223 7 6 5.6484 1.0161 0.5992 8 6 4.4018 1.1089 1.1687 9 6 4.0437 1.1284 2.5984 10 8 2.8977 1.3564 2.9350 11 7 4.9864 0.8933 3.5324 12 6 6.4160 0.6517 3.2695 13 6 6.9185 -0.1609 4.4856 14 1 8.0008 -0.1383 4.6128 15 6 6.3317 -1.5873 4.4026 16 6 6.0422 -1.9776 5.8651 17 6 5.8851 -0.6647 6.6491 18 1 6.6301 -0.6150 7.4432 19 7 4.5393 -0.5838 7.2221 20 6 4.2936 0.2538 8.2772 21 1 5.0920 0.8544 8.6872 22 6 3.0185 0.3301 8.8205 23 7 2.0455 -0.4022 8.3212 24 14 2.6831 1.4732 10.2594 25 1 2.9883 2.8713 9.8625 26 1 1.2542 1.3708 10.6503 27 1 3.5402 1.0866 11.4088 28 6 6.1046 0.4866 5.6515 29 1 6.6052 1.3457 6.0982 30 6 4.7615 0.8415 4.9845 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.6886 1.8464 0.8900 35 1 1.6886 1.8464 -0.8900 36 1 6.5929 0.9413 1.1176 37 1 6.5400 0.0758 2.3523 38 1 6.9526 1.5978 3.1969 39 1 5.4102 -1.5855 3.8205 40 1 7.0571 -2.2712 3.9618 41 1 5.1215 -2.5582 5.9210 42 1 6.8735 -2.5559 6.2685 43 1 3.8222 -1.1235 6.8541 44 1 1.1545 -0.3492 8.7010 45 1 4.4146 1.8119 5.3398 46 1 4.0217 0.0755 5.2168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026398921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:26 Heat of formation + Delta-G solvation = 20.710370 kcal Electronic energy + Delta-G solvation = -30059.354488 eV Core-core repulsion = 25953.798823 eV Total energy + Delta-G solvation = -4105.555665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.12725 -40.44497 -38.41047 -37.88454 -35.20688 -34.11720 -33.34653 -32.30145 -30.93909 -29.33104 -28.50525 -28.32641 -25.98433 -25.54770 -25.04460 -23.17878 -22.76834 -21.51619 -19.99247 -19.82440 -18.84031 -17.97420 -17.56516 -17.40297 -16.96919 -16.38701 -15.96595 -15.81598 -15.60486 -15.03086 -14.88070 -14.69706 -14.24700 -13.75909 -13.54484 -13.21006 -13.04739 -12.75238 -12.62885 -12.55233 -12.37836 -12.08811 -11.67540 -11.62116 -11.45935 -11.06310 -10.79537 -10.73729 -10.65209 -10.40664 -10.37748 -10.33160 -10.23923 -9.99726 -9.95096 -9.86158 -9.70946 -9.64392 -8.89462 -8.38380 -6.98266 -5.77777 -3.07993 0.93628 1.47726 2.65093 3.14347 3.27091 3.43466 3.48148 3.49551 3.57198 3.97579 4.26273 4.44731 4.51526 4.58934 4.69128 4.76213 4.96912 5.04100 5.12680 5.20248 5.25057 5.32880 5.37721 5.44124 5.46042 5.55531 5.56629 5.60826 5.68379 5.75569 5.83164 5.91332 6.00469 6.06579 6.27124 6.30195 6.45793 6.52426 6.66452 6.78483 6.80684 6.93938 6.95612 7.65314 7.69287 7.95971 8.28534 8.39785 9.51058 10.06764 10.40225 11.44056 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011957 B = 0.003661 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.095553 B = 7646.735419 C = 9086.955513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.141 3.859 4 C 0.064 3.936 5 N -0.341 5.341 6 O 0.103 5.897 7 C -0.029 4.029 8 C -0.223 4.223 9 C 0.600 3.400 10 O -0.520 6.520 11 N -0.606 5.606 12 C 0.088 3.912 13 C -0.105 4.105 14 H 0.103 0.897 15 C -0.115 4.115 16 C -0.128 4.128 17 C 0.181 3.819 18 H 0.052 0.948 19 N -0.718 5.718 20 C -0.247 4.247 21 H 0.070 0.930 22 C -0.007 4.007 23 N -0.928 5.928 24 Si 0.904 3.096 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.116 4.116 29 H 0.083 0.917 30 C 0.132 3.868 31 H 0.049 0.951 32 H 0.041 0.959 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.236 0.764 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.385 0.615 44 H 0.257 0.743 45 H 0.065 0.935 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.579 1.391 -16.943 19.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.301 6.301 3 C 0.063 3.937 4 C -0.099 4.099 5 N -0.046 5.046 6 O 0.039 5.961 7 C -0.110 4.110 8 C -0.230 4.230 9 C 0.388 3.612 10 O -0.397 6.397 11 N -0.340 5.340 12 C -0.036 4.036 13 C -0.124 4.124 14 H 0.121 0.879 15 C -0.153 4.153 16 C -0.166 4.166 17 C 0.069 3.931 18 H 0.070 0.930 19 N -0.359 5.359 20 C -0.378 4.378 21 H 0.088 0.912 22 C -0.203 4.203 23 N -0.575 5.575 24 Si 0.735 3.265 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.138 4.138 29 H 0.102 0.898 30 C 0.011 3.989 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.251 0.749 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.220 0.780 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.723 1.466 -17.943 20.005 hybrid contribution -0.614 0.748 1.545 1.823 sum 8.109 2.214 -16.398 18.427 Atomic orbital electron populations 1.22779 0.79959 1.03189 1.00321 1.87904 1.20417 1.26231 1.95538 1.20593 0.84131 0.86280 1.02661 1.24355 0.97457 1.01360 0.86713 1.73641 0.89625 1.17738 1.23613 1.84578 1.21564 1.66445 1.23517 1.27169 1.00919 0.99333 0.83560 1.22413 0.92614 1.12163 0.95808 1.16357 0.84490 0.78092 0.82305 1.90835 1.18804 1.48800 1.81220 1.48410 1.07690 1.69578 1.08316 1.22661 0.82244 0.99494 0.99151 1.23207 0.99651 0.95289 0.94249 0.87884 1.22258 1.00338 0.94953 0.97770 1.22362 1.01653 0.98439 0.94155 1.20707 0.89420 0.90269 0.92661 0.93048 1.42632 1.05095 1.50699 1.37474 1.19140 0.94345 1.16976 1.07330 0.91227 1.24731 0.96018 0.99915 0.99678 1.69638 1.01350 1.43018 1.43485 0.86323 0.76976 0.80648 0.82529 1.21264 1.21728 1.21299 1.23571 0.93767 1.00383 0.96079 0.89833 1.22001 0.98613 1.03359 0.74934 0.93194 0.94049 0.89251 0.89053 0.91466 0.74857 0.90770 0.91118 0.91612 0.92139 0.91277 0.92035 0.78011 0.93354 0.91696 0.88713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.49 16 2 O -0.38 -5.73 10.69 -35.23 -0.38 -6.10 16 3 C 0.14 1.93 6.25 36.00 0.22 2.16 16 4 C 0.06 0.92 7.21 -79.76 -0.58 0.35 16 5 N -0.34 -4.62 12.01 34.78 0.42 -4.20 16 6 O 0.10 1.15 11.06 18.64 0.21 1.35 16 7 C -0.03 -0.28 10.69 30.41 0.33 0.04 16 8 C -0.22 -3.10 6.38 -102.89 -0.66 -3.76 16 9 C 0.60 10.22 7.84 -12.53 -0.10 10.12 16 10 O -0.52 -11.01 16.01 5.28 0.08 -10.92 16 11 N -0.61 -9.21 2.83 -172.14 -0.49 -9.70 16 12 C 0.09 0.90 4.69 -2.71 -0.01 0.89 16 13 C -0.10 -1.16 4.28 -87.25 -0.37 -1.54 16 14 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 15 C -0.12 -1.43 5.85 -25.39 -0.15 -1.58 16 16 C -0.13 -1.92 6.56 -25.78 -0.17 -2.08 16 17 C 0.18 3.22 3.24 -67.08 -0.22 3.00 16 18 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16 19 N -0.72 -16.78 3.53 -52.60 -0.19 -16.96 16 20 C -0.25 -6.51 9.94 -15.06 -0.15 -6.66 16 21 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 22 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 23 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 24 Si 0.90 22.12 29.55 -169.99 -5.02 17.09 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 28 C -0.12 -1.78 3.93 -87.83 -0.35 -2.13 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 30 C 0.13 2.41 5.44 -3.17 -0.02 2.40 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.33 7.03 -51.93 -0.37 0.96 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.24 1.31 5.08 -52.49 -0.27 1.05 16 37 H 0.07 0.59 5.14 -51.93 -0.27 0.32 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.94 7.30 -51.93 -0.38 0.56 16 40 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 41 H 0.07 1.17 7.56 -51.93 -0.39 0.78 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.38 9.86 6.90 -40.82 -0.28 9.57 16 44 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.09 2.10 6.21 -51.93 -0.32 1.78 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -33.62 369.76 -6.73 -40.35 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.47 Total: 8.04 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -1.20 Total: 2.41 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: 0.47 Total: -57.80 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.09 Total: -15.67 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.62 -6.73 -40.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026398921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.061 kcal (2) G-P(sol) polarization free energy of solvation -33.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds