Wall clock time and date at job start Tue Mar 31 2020 18:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99890 * 2 1 4 4 C 1.50706 * 109.47013 * 179.97438 * 3 2 1 5 5 O 1.21285 * 120.00044 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99580 * 179.97438 * 4 3 2 7 7 C 1.46505 * 119.99629 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.47069 * 180.02562 * 7 6 4 9 9 C 1.38233 * 119.99976 * 89.99744 * 8 7 6 10 10 C 1.38237 * 119.99578 * 180.02562 * 9 8 7 11 11 C 1.38235 * 120.00177 * 359.97438 * 10 9 8 12 12 C 1.50699 * 120.00062 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.46990 * 89.99891 * 12 11 10 14 14 C 1.46902 * 110.99573 * 180.02562 * 13 12 11 15 15 C 1.50707 * 109.46656 * 179.97438 * 14 13 12 16 16 O 1.21294 * 120.00016 * 0.02562 * 15 14 13 17 17 N 1.34783 * 119.99715 * 179.97438 * 15 14 13 18 18 C 1.37092 * 119.99635 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00232 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99714 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00117 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99954 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47073 * 90.00485 * 22 20 18 24 24 H 1.48501 * 109.47297 * 209.99946 * 22 20 18 25 25 H 1.48496 * 109.47417 * 330.00214 * 22 20 18 26 26 C 1.38237 * 119.99882 * 0.25351 * 11 10 9 27 27 C 1.38230 * 119.99851 * 359.49431 * 26 11 10 28 28 H 1.08995 * 109.46918 * 300.00130 * 1 2 3 29 29 H 1.09004 * 109.46932 * 60.00418 * 1 2 3 30 30 H 1.08995 * 109.46705 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47164 * 59.99999 * 3 2 1 32 32 H 1.09000 * 109.47056 * 299.99453 * 3 2 1 33 33 H 0.96990 * 120.00438 * 359.97438 * 6 4 3 34 34 H 1.08999 * 109.47287 * 59.99339 * 7 6 4 35 35 H 1.09000 * 109.46600 * 299.99562 * 7 6 4 36 36 H 1.07999 * 120.00212 * 359.97438 * 9 8 7 37 37 H 1.07998 * 119.99878 * 179.97438 * 10 9 8 38 38 H 1.09002 * 109.47064 * 330.00168 * 12 11 10 39 39 H 1.09000 * 109.47099 * 209.99894 * 12 11 10 40 40 H 1.00896 * 111.00309 * 56.04484 * 13 12 11 41 41 H 1.08990 * 109.47358 * 299.99539 * 14 13 12 42 42 H 1.09004 * 109.47457 * 60.00221 * 14 13 12 43 43 H 0.96993 * 119.99587 * 0.02562 * 17 15 14 44 44 H 0.96997 * 120.00406 * 179.97438 * 21 20 18 45 45 H 1.08003 * 119.99515 * 179.73041 * 26 11 10 46 46 H 1.08001 * 119.99972 * 180.22884 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 8 4.0342 0.0915 0.0015 6 7 4.2764 2.2969 0.0002 7 6 5.7369 2.1812 0.0003 8 6 6.3498 3.5580 0.0004 9 6 6.6308 4.1893 1.1976 10 6 7.1926 5.4524 1.1976 11 6 7.4738 6.0838 0.0005 12 6 8.0856 7.4610 0.0005 13 7 9.5502 7.3462 0.0013 14 6 10.1822 8.6723 0.0019 15 6 11.6810 8.5144 0.0033 16 8 12.1740 7.4062 0.0032 17 7 12.4734 9.6047 0.0036 18 6 13.8368 9.4610 0.0043 19 1 14.2758 8.4743 0.0051 20 6 14.6537 10.5850 0.0052 21 7 15.9606 10.4474 0.0064 22 14 13.8943 12.2916 0.0046 23 1 13.6919 12.7438 1.4045 24 1 14.8015 13.2369 -0.6945 25 1 12.5860 12.2510 -0.6966 26 6 7.1884 5.4544 -1.1967 27 6 6.6315 4.1892 -1.1967 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0276 -0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8593 3.1725 -0.0009 34 1 6.0586 1.6399 -0.8894 35 1 6.0584 1.6407 0.8905 36 1 6.4108 3.6961 2.1329 37 1 7.4118 5.9459 2.1329 38 1 7.7632 8.0018 0.8903 39 1 7.7640 8.0015 -0.8897 40 1 9.8700 6.7933 -0.7798 41 1 9.8752 9.2215 -0.8880 42 1 9.8742 9.2212 0.8920 43 1 12.0790 10.4908 0.0033 44 1 16.5310 11.2320 0.0066 45 1 7.4041 5.9496 -2.1320 46 1 6.4119 3.6959 -2.1321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753588310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:19 Heat of formation + Delta-G solvation = -83.105226 kcal Electronic energy + Delta-G solvation = -26498.458520 eV Core-core repulsion = 22388.401073 eV Total energy + Delta-G solvation = -4110.057447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.36584 -39.58905 -38.46436 -37.90737 -36.08897 -34.89950 -33.91370 -32.08572 -31.64715 -31.16020 -29.75710 -28.12362 -26.65581 -25.72133 -24.20969 -23.04718 -22.88429 -21.10789 -20.96746 -19.41845 -18.40951 -18.03102 -17.35289 -16.84449 -16.60594 -16.06973 -15.90859 -15.69620 -15.44435 -15.23307 -14.89413 -14.76653 -14.72699 -14.37618 -13.79484 -13.65153 -13.48085 -13.40931 -13.17167 -12.97002 -12.69932 -12.52475 -12.49812 -12.12218 -11.99967 -11.92510 -11.73336 -11.24867 -11.17264 -11.14234 -10.61361 -10.35721 -10.28544 -9.98958 -9.58904 -9.52947 -9.12464 -8.95713 -8.62558 -8.21428 -8.16667 -6.32277 -3.83867 0.92915 1.20710 2.18906 2.43310 3.00508 3.05297 3.13547 3.41743 3.67358 3.72288 4.08503 4.22079 4.24066 4.37527 4.53241 4.53701 4.59659 4.73691 4.78194 4.79234 4.82078 4.83667 4.96405 5.14924 5.20002 5.23206 5.29431 5.34350 5.46556 5.50583 5.59450 5.75853 5.76907 5.85989 5.90187 5.91409 6.14781 6.30391 6.41673 6.44441 6.74641 7.01247 7.03888 7.50399 7.56856 7.78523 8.13169 8.58378 8.93733 9.40946 9.81110 10.80880 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.044191 B = 0.001410 C = 0.001388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.466626 B =19855.411906 C =20161.138706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.367 6.367 3 C 0.043 3.957 4 C 0.511 3.489 5 O -0.518 6.518 6 N -0.725 5.725 7 C 0.165 3.835 8 C -0.116 4.116 9 C -0.101 4.101 10 C -0.096 4.096 11 C -0.065 4.065 12 C 0.094 3.906 13 N -0.663 5.663 14 C 0.048 3.952 15 C 0.449 3.551 16 O -0.563 6.563 17 N -0.590 5.590 18 C -0.306 4.306 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.270 1.270 26 C -0.115 4.115 27 C -0.100 4.100 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.402 0.598 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.037 0.963 40 H 0.353 0.647 41 H 0.045 0.955 42 H 0.088 0.912 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.122 0.878 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.920 -9.404 -0.805 34.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.037 4.037 4 C 0.296 3.704 5 O -0.393 6.393 6 N -0.379 5.379 7 C 0.042 3.958 8 C -0.117 4.117 9 C -0.119 4.119 10 C -0.115 4.115 11 C -0.066 4.066 12 C -0.035 4.035 13 N -0.296 5.296 14 C -0.085 4.085 15 C 0.235 3.765 16 O -0.445 6.445 17 N -0.230 5.230 18 C -0.435 4.435 19 H 0.137 0.863 20 C -0.161 4.161 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 C -0.133 4.133 27 C -0.119 4.119 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.236 0.764 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.099 0.901 39 H 0.055 0.945 40 H 0.172 0.828 41 H 0.063 0.937 42 H 0.106 0.894 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.140 0.860 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -31.809 -11.128 -0.125 33.699 hybrid contribution -0.901 2.561 -0.916 2.865 sum -32.710 -8.567 -1.041 33.829 Atomic orbital electron populations 1.22858 0.80178 1.03480 1.00195 1.88026 1.19939 1.25095 1.95435 1.22238 0.91551 0.87157 1.02749 1.20286 0.88705 0.84572 0.76798 1.90761 1.74570 1.26455 1.47469 1.45984 1.06842 1.08794 1.76283 1.20189 0.78470 0.93683 1.03424 1.19755 1.02376 0.95796 0.93784 1.21070 0.98485 0.94988 0.97364 1.21071 0.97612 0.94776 0.98033 1.19882 0.97163 0.96298 0.93218 1.20950 0.88493 0.92707 1.01303 1.60106 1.03249 1.14516 1.51732 1.21730 0.94399 0.91026 1.01362 1.19693 0.87403 0.85339 0.84088 1.90577 1.75468 1.24860 1.53606 1.42198 1.07258 1.06410 1.67118 1.19441 0.78778 0.97127 1.48117 0.86273 1.25035 0.95239 0.98196 0.97630 1.69619 1.02579 1.30581 1.49316 0.86669 0.79181 0.84600 0.78903 1.19586 1.20181 1.19556 1.21081 0.99268 0.95205 0.97757 1.21005 0.98633 0.94845 0.97370 0.93706 0.93724 0.88971 0.90119 0.90132 0.76350 0.90423 0.90386 0.85886 0.85500 0.90084 0.94466 0.82772 0.93680 0.89364 0.79692 0.91598 0.85964 0.85963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.37 -3.23 10.24 -55.14 -0.56 -3.80 16 3 C 0.04 0.25 6.42 36.01 0.23 0.49 16 4 C 0.51 4.61 7.91 -10.98 -0.09 4.52 16 5 O -0.52 -7.28 16.50 -14.36 -0.24 -7.52 16 6 N -0.72 -4.79 5.55 -61.47 -0.34 -5.13 16 7 C 0.16 1.32 5.80 -5.19 -0.03 1.29 16 8 C -0.12 -0.96 5.25 -104.62 -0.55 -1.51 16 9 C -0.10 -0.87 9.70 -39.58 -0.38 -1.26 16 10 C -0.10 -0.95 9.70 -39.58 -0.38 -1.34 16 11 C -0.06 -0.67 5.39 -104.62 -0.56 -1.24 16 12 C 0.09 1.03 5.81 -4.97 -0.03 1.00 16 13 N -0.66 -9.96 6.11 -116.33 -0.71 -10.67 16 14 C 0.05 0.76 6.17 -4.97 -0.03 0.73 16 15 C 0.45 10.10 7.82 -10.98 -0.09 10.01 16 16 O -0.56 -15.16 15.78 5.55 0.09 -15.07 16 17 N -0.59 -13.93 5.09 -10.96 -0.06 -13.99 16 18 C -0.31 -8.64 10.16 -14.93 -0.15 -8.79 16 19 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 20 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 21 N -0.88 -25.68 13.96 55.50 0.77 -24.90 16 22 Si 0.88 19.16 27.74 -169.99 -4.71 14.45 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 26 C -0.11 -1.07 9.70 -39.58 -0.38 -1.46 16 27 C -0.10 -0.84 9.70 -39.59 -0.38 -1.23 16 28 H 0.04 0.14 8.14 -51.93 -0.42 -0.29 16 29 H 0.04 0.14 8.14 -51.93 -0.42 -0.29 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.40 1.61 8.46 -40.82 -0.35 1.27 16 34 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 36 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 38 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 39 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 40 H 0.35 5.62 8.42 -39.29 -0.33 5.29 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 44 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 46 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 397.64 15.07 5.99 5.99 Total: -1.00 -37.18 397.64 -8.38 -45.56 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -6.80 Total: 11.58 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -1.82 Total: 3.50 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.33 Total: -54.69 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.71 Total: -26.39 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.71 Total: 14.45 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.18 -8.38 -45.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753588310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.547 kcal (2) G-P(sol) polarization free energy of solvation -37.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds