Wall clock time and date at job start Tue Mar 31 2020 18:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46498 * 110.64147 * 2 1 4 4 C 1.34778 * 119.99999 * 298.31284 * 3 2 1 5 5 O 1.21599 * 119.99934 * 0.02562 * 4 3 2 6 6 C 1.47526 * 120.00103 * 180.02562 * 4 3 2 7 7 C 1.36596 * 125.77266 * 180.24343 * 6 4 3 8 8 N 1.34806 * 106.84225 * 180.13683 * 7 6 4 9 9 C 1.46500 * 126.59829 * 179.90697 * 8 7 6 10 10 H 1.09001 * 110.43838 * 205.40449 * 9 8 7 11 11 C 1.54809 * 110.60139 * 82.78572 * 9 8 7 12 12 C 1.54992 * 102.09466 * 220.39224 * 11 9 8 13 13 O 1.44384 * 103.49362 * 37.01986 * 12 11 9 14 14 C 1.43750 * 106.97272 * 319.94788 * 13 12 11 15 15 N 1.40210 * 106.80881 * 359.63961 * 8 7 6 16 16 N 1.28765 * 108.36857 * 0.22833 * 15 8 7 17 17 C 1.55155 * 110.86909 * 123.24679 * 2 1 3 18 18 C 1.54914 * 101.57803 * 153.93750 * 17 2 1 19 19 N 1.47426 * 104.83045 * 322.98689 * 18 17 2 20 20 C 1.36933 * 125.65024 * 204.16282 * 19 18 17 21 21 H 1.08000 * 120.00293 * 161.48211 * 20 19 18 22 22 C 1.38815 * 119.99947 * 341.48951 * 20 19 18 23 23 N 1.31621 * 120.00075 * 157.62980 * 22 20 19 24 24 Si 1.86802 * 119.99914 * 337.62478 * 22 20 19 25 25 H 1.48495 * 109.46850 * 84.53876 * 24 22 20 26 26 H 1.48497 * 109.47065 * 204.53625 * 24 22 20 27 27 H 1.48494 * 109.47142 * 324.53718 * 24 22 20 28 28 C 1.47020 * 108.70296 * 24.13473 * 19 18 17 29 29 H 1.08994 * 109.46892 * 59.29735 * 1 2 3 30 30 H 1.09001 * 109.47042 * 179.30074 * 1 2 3 31 31 H 1.08997 * 109.46716 * 299.29852 * 1 2 3 32 32 H 0.96992 * 119.99911 * 118.31176 * 3 2 1 33 33 H 1.08004 * 126.57655 * 359.97438 * 7 6 4 34 34 H 1.09009 * 110.90920 * 338.58628 * 11 9 8 35 35 H 1.08997 * 110.91212 * 102.19002 * 11 9 8 36 36 H 1.09004 * 110.61702 * 278.52373 * 12 11 9 37 37 H 1.08994 * 110.62134 * 155.52295 * 12 11 9 38 38 H 1.09002 * 109.86944 * 267.08522 * 14 13 12 39 39 H 1.08991 * 110.00457 * 146.00513 * 14 13 12 40 40 H 1.08995 * 111.00723 * 272.00500 * 17 2 1 41 41 H 1.08997 * 111.00570 * 35.86625 * 17 2 1 42 42 H 1.09001 * 110.36727 * 204.15677 * 18 17 2 43 43 H 1.08994 * 110.36782 * 81.82911 * 18 17 2 44 44 H 0.97000 * 119.99752 * 180.02562 * 23 22 20 45 45 H 1.09009 * 109.87776 * 239.51912 * 28 19 18 46 46 H 1.09000 * 109.88674 * 118.35540 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0465 1.3709 0.0000 4 6 1.7660 2.1967 -1.0276 5 8 1.0839 1.8040 -1.9545 6 6 2.2865 3.5771 -1.0279 7 6 2.0723 4.5111 -2.0014 8 7 2.7205 5.6295 -1.6190 9 6 2.7781 6.8984 -2.3489 10 1 3.6784 7.4513 -2.0807 11 6 1.5156 7.7482 -2.0647 12 6 1.1993 8.3376 -3.4628 13 8 1.5280 7.2594 -4.3651 14 6 2.7310 6.6488 -3.8688 15 7 3.3238 5.3468 -0.3853 16 7 3.0475 4.1299 -0.0678 17 6 2.0828 -0.7948 1.2125 18 6 3.4674 -1.2455 0.6837 19 7 3.2471 -1.5462 -0.7426 20 6 4.0068 -2.3911 -1.5068 21 1 3.6138 -2.7811 -2.4340 22 6 5.2822 -2.7464 -1.0896 23 7 5.8386 -3.8505 -1.5411 24 14 6.2089 -1.6576 0.1126 25 1 5.8042 -1.9964 1.5005 26 1 7.6691 -1.8773 -0.0449 27 1 5.8901 -0.2336 -0.1624 28 6 2.0761 -0.7891 -1.2086 29 1 -0.3633 0.5247 -0.8836 30 1 -0.3633 -1.0276 -0.0125 31 1 -0.3633 0.5029 0.8962 32 1 2.5903 1.6843 0.7395 33 1 1.4965 4.3780 -2.9054 34 1 0.6962 7.1216 -1.7123 35 1 1.7332 8.5406 -1.3486 36 1 1.8234 9.2087 -3.6622 37 1 0.1431 8.5949 -3.5409 38 1 3.6002 7.1015 -4.3459 39 1 2.7149 5.5774 -4.0682 40 1 2.1887 -0.1515 2.0859 41 1 1.4515 -1.6546 1.4366 42 1 3.8031 -2.1379 1.2120 43 1 4.1955 -0.4419 0.7940 44 1 6.7297 -4.0990 -1.2492 45 1 1.3140 -1.4755 -1.5781 46 1 2.3712 -0.0991 -1.9991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046756708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:53 Heat of formation + Delta-G solvation = 59.953742 kcal Electronic energy + Delta-G solvation = -29519.932857 eV Core-core repulsion = 25448.371664 eV Total energy + Delta-G solvation = -4071.561194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.53100 -40.13434 -39.73471 -37.47056 -35.06598 -34.09440 -32.11523 -31.75511 -31.11352 -30.14346 -29.39140 -28.92904 -26.13570 -24.80577 -23.81538 -23.28839 -23.15422 -21.27921 -20.93393 -20.89553 -19.09643 -18.50686 -17.22949 -16.97693 -16.68630 -16.26271 -16.00522 -15.74709 -15.28783 -15.07052 -14.89563 -14.53591 -14.35895 -13.84758 -13.73094 -13.35896 -13.22163 -13.08876 -12.75970 -12.45350 -12.37268 -12.17480 -12.07388 -11.98765 -11.84404 -11.56863 -11.48393 -11.39106 -11.00834 -10.88795 -10.81079 -10.51704 -10.31953 -10.14071 -9.98545 -9.64621 -9.46985 -9.36060 -8.75381 -8.60660 -6.95203 -5.87531 -3.16658 0.88478 1.59840 1.63776 3.05861 3.23609 3.38794 3.40551 3.53261 3.56898 3.59296 3.79968 4.00059 4.09518 4.23377 4.40492 4.51669 4.61260 4.73662 4.81554 4.87387 4.93303 4.98639 5.03110 5.03803 5.12738 5.20239 5.29298 5.33627 5.56586 5.61155 5.85303 5.90657 6.01147 6.02459 6.06052 6.08774 6.23330 6.38615 6.53057 6.61529 6.73533 6.79060 7.03831 7.59567 7.78531 7.85615 8.36672 8.38750 8.91679 9.76485 10.25776 11.28860 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016083 B = 0.002965 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.532542 B = 9440.328861 C = 9974.504284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.158 3.842 3 N -0.695 5.695 4 C 0.606 3.394 5 O -0.531 6.531 6 C -0.091 4.091 7 C 0.093 3.907 8 N -0.359 5.359 9 C 0.117 3.883 10 H 0.130 0.870 11 C -0.166 4.166 12 C 0.047 3.953 13 O -0.365 6.365 14 C 0.035 3.965 15 N -0.064 5.064 16 N -0.201 5.201 17 C -0.132 4.132 18 C 0.110 3.890 19 N -0.609 5.609 20 C -0.236 4.236 21 H 0.092 0.908 22 C 0.020 3.980 23 N -0.911 5.911 24 Si 0.882 3.118 25 H -0.285 1.285 26 H -0.304 1.304 27 H -0.277 1.277 28 C 0.136 3.864 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.405 0.595 33 H 0.205 0.795 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.061 0.939 43 H 0.025 0.975 44 H 0.262 0.738 45 H 0.043 0.957 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.915 26.371 0.780 28.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.073 3.927 3 N -0.346 5.346 4 C 0.389 3.611 5 O -0.407 6.407 6 C -0.230 4.230 7 C -0.063 4.063 8 N -0.145 5.145 9 C 0.014 3.986 10 H 0.148 0.852 11 C -0.204 4.204 12 C -0.029 4.029 13 O -0.284 6.284 14 C -0.044 4.044 15 N -0.044 5.044 16 N -0.075 5.075 17 C -0.171 4.171 18 C -0.016 4.016 19 N -0.336 5.336 20 C -0.363 4.363 21 H 0.110 0.890 22 C -0.178 4.178 23 N -0.555 5.555 24 Si 0.713 3.287 25 H -0.212 1.212 26 H -0.232 1.232 27 H -0.203 1.203 28 C 0.010 3.990 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.240 0.760 33 H 0.222 0.778 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.123 0.877 38 H 0.106 0.894 39 H 0.119 0.881 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.042 0.958 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.459 26.404 0.972 28.417 hybrid contribution 0.715 0.641 0.395 1.038 sum -9.745 27.045 1.366 28.780 Atomic orbital electron populations 1.22037 0.93534 1.02649 1.02569 1.21407 0.93578 0.80105 0.97641 1.45790 1.53321 1.12389 1.23067 1.16650 0.79763 0.82087 0.82576 1.90793 1.39132 1.75595 1.35179 1.21609 1.08036 0.98146 0.95253 1.23299 0.96506 0.85585 1.00943 1.50478 1.35764 1.10689 1.17528 1.23050 1.02227 0.81283 0.91992 0.85203 1.23651 0.96786 1.00350 0.99641 1.23637 1.02663 0.90372 0.86257 1.89003 1.42236 1.47589 1.49522 1.23639 0.89805 1.01135 0.89774 1.82001 1.18095 1.09256 0.95006 1.74646 1.09114 1.01428 1.22322 1.23075 0.98688 0.99634 0.95666 1.21972 0.94065 0.98643 0.86892 1.44805 1.32357 1.51455 1.04976 1.18655 0.94815 1.17616 1.05210 0.89019 1.24989 0.96775 0.97498 0.98573 1.69846 1.16522 1.21812 1.47335 0.86985 0.78616 0.82098 0.81037 1.21232 1.23182 1.20330 1.21688 0.90226 0.93177 0.93942 0.90681 0.91339 0.92895 0.76016 0.77814 0.89128 0.88197 0.91035 0.87745 0.89447 0.88092 0.91013 0.89339 0.92071 0.95800 0.92824 0.93939 0.93840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.45 37.16 0.31 -1.84 16 2 C 0.16 2.70 0.81 -129.98 -0.11 2.60 16 3 N -0.70 -11.33 5.14 -46.94 -0.24 -11.57 16 4 C 0.61 9.97 7.04 -12.47 -0.09 9.88 16 5 O -0.53 -9.66 13.78 5.28 0.07 -9.59 16 6 C -0.09 -1.31 6.99 -83.55 -0.58 -1.89 16 7 C 0.09 1.03 9.99 -16.84 -0.17 0.86 16 8 N -0.36 -3.54 3.59 -53.08 -0.19 -3.73 16 9 C 0.12 0.69 4.18 -66.40 -0.28 0.41 16 10 H 0.13 0.57 8.14 -51.93 -0.42 0.14 16 11 C -0.17 -0.73 6.88 -24.73 -0.17 -0.90 16 12 C 0.05 0.19 7.72 38.21 0.29 0.48 16 13 O -0.37 -2.55 11.52 -35.23 -0.41 -2.96 16 14 C 0.03 0.20 7.21 37.73 0.27 0.47 16 15 N -0.06 -0.83 13.78 60.35 0.83 0.00 16 16 N -0.20 -2.97 12.04 32.85 0.40 -2.58 16 17 C -0.13 -2.19 6.09 -24.58 -0.15 -2.34 16 18 C 0.11 2.41 4.67 -2.53 -0.01 2.40 16 19 N -0.61 -15.32 3.21 -170.07 -0.55 -15.86 16 20 C -0.24 -6.95 10.57 -15.06 -0.16 -7.11 16 21 H 0.09 2.87 8.06 -52.49 -0.42 2.44 16 22 C 0.02 0.59 5.43 -17.43 -0.09 0.50 16 23 N -0.91 -28.84 13.97 55.49 0.78 -28.06 16 24 Si 0.88 23.38 24.27 -169.99 -4.13 19.26 16 25 H -0.29 -7.18 6.49 56.52 0.37 -6.81 16 26 H -0.30 -8.15 7.11 56.52 0.40 -7.75 16 27 H -0.28 -7.37 6.66 56.52 0.38 -7.00 16 28 C 0.14 2.92 6.13 -3.07 -0.02 2.90 16 29 H 0.07 1.17 6.37 -51.93 -0.33 0.83 16 30 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.40 6.15 8.16 -40.82 -0.33 5.82 16 33 H 0.21 1.83 7.45 -52.48 -0.39 1.44 16 34 H 0.09 0.52 8.07 -51.92 -0.42 0.10 16 35 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 37 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.10 0.66 6.36 -51.93 -0.33 0.33 16 40 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 41 H 0.09 1.37 8.05 -51.93 -0.42 0.95 16 42 H 0.06 1.43 6.63 -51.93 -0.34 1.08 16 43 H 0.02 0.56 5.58 -51.93 -0.29 0.27 16 44 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 45 H 0.04 0.91 7.80 -51.92 -0.41 0.51 16 46 H 0.04 1.02 6.47 -51.93 -0.34 0.69 16 LS Contribution 366.05 15.07 5.52 5.52 Total: -1.00 -36.36 366.05 -5.46 -41.82 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.59 Total: 1.34 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -0.95 Total: 6.43 kcal Atomic # 7 Polarization: -62.84 SS G_CDS: 1.03 Total: -61.81 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.33 Total: -12.54 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -4.13 Total: 19.26 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.36 -5.46 -41.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046756708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.774 kcal (2) G-P(sol) polarization free energy of solvation -36.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds