Wall clock time and date at job start Tue Mar 31 2020 18:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46498 * 110.64147 * 2 1 4 4 C 1.34778 * 119.99999 * 298.31284 * 3 2 1 5 5 O 1.21599 * 119.99934 * 0.02562 * 4 3 2 6 6 C 1.47526 * 120.00103 * 180.02562 * 4 3 2 7 7 C 1.36596 * 125.77266 * 180.24343 * 6 4 3 8 8 N 1.34806 * 106.84225 * 180.13683 * 7 6 4 9 9 C 1.46500 * 126.59829 * 179.90697 * 8 7 6 10 10 H 1.09001 * 110.43838 * 205.40449 * 9 8 7 11 11 C 1.54809 * 110.60139 * 82.78572 * 9 8 7 12 12 C 1.54992 * 102.09466 * 220.39224 * 11 9 8 13 13 O 1.44384 * 103.49362 * 37.01986 * 12 11 9 14 14 C 1.43750 * 106.97272 * 319.94788 * 13 12 11 15 15 N 1.40210 * 106.80881 * 359.63961 * 8 7 6 16 16 N 1.28765 * 108.36857 * 0.22833 * 15 8 7 17 17 C 1.55155 * 110.86909 * 123.24679 * 2 1 3 18 18 C 1.54914 * 101.57803 * 153.93750 * 17 2 1 19 19 N 1.47426 * 104.83045 * 322.98689 * 18 17 2 20 20 C 1.36933 * 125.65024 * 204.16282 * 19 18 17 21 21 H 1.08000 * 120.00293 * 161.48211 * 20 19 18 22 22 C 1.38815 * 119.99947 * 341.48951 * 20 19 18 23 23 N 1.31621 * 120.00075 * 157.62980 * 22 20 19 24 24 Si 1.86802 * 119.99914 * 337.62478 * 22 20 19 25 25 H 1.48495 * 109.46850 * 84.53876 * 24 22 20 26 26 H 1.48497 * 109.47065 * 204.53625 * 24 22 20 27 27 H 1.48494 * 109.47142 * 324.53718 * 24 22 20 28 28 C 1.47020 * 108.70296 * 24.13473 * 19 18 17 29 29 H 1.08994 * 109.46892 * 59.29735 * 1 2 3 30 30 H 1.09001 * 109.47042 * 179.30074 * 1 2 3 31 31 H 1.08997 * 109.46716 * 299.29852 * 1 2 3 32 32 H 0.96992 * 119.99911 * 118.31176 * 3 2 1 33 33 H 1.08004 * 126.57655 * 359.97438 * 7 6 4 34 34 H 1.09009 * 110.90920 * 338.58628 * 11 9 8 35 35 H 1.08997 * 110.91212 * 102.19002 * 11 9 8 36 36 H 1.09004 * 110.61702 * 278.52373 * 12 11 9 37 37 H 1.08994 * 110.62134 * 155.52295 * 12 11 9 38 38 H 1.09002 * 109.86944 * 267.08522 * 14 13 12 39 39 H 1.08991 * 110.00457 * 146.00513 * 14 13 12 40 40 H 1.08995 * 111.00723 * 272.00500 * 17 2 1 41 41 H 1.08997 * 111.00570 * 35.86625 * 17 2 1 42 42 H 1.09001 * 110.36727 * 204.15677 * 18 17 2 43 43 H 1.08994 * 110.36782 * 81.82911 * 18 17 2 44 44 H 0.97000 * 119.99752 * 180.02562 * 23 22 20 45 45 H 1.09009 * 109.87776 * 239.51912 * 28 19 18 46 46 H 1.09000 * 109.88674 * 118.35540 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0465 1.3709 0.0000 4 6 1.7660 2.1967 -1.0276 5 8 1.0839 1.8040 -1.9545 6 6 2.2865 3.5771 -1.0279 7 6 2.0723 4.5111 -2.0014 8 7 2.7205 5.6295 -1.6190 9 6 2.7781 6.8984 -2.3489 10 1 3.6784 7.4513 -2.0807 11 6 1.5156 7.7482 -2.0647 12 6 1.1993 8.3376 -3.4628 13 8 1.5280 7.2594 -4.3651 14 6 2.7310 6.6488 -3.8688 15 7 3.3238 5.3468 -0.3853 16 7 3.0475 4.1299 -0.0678 17 6 2.0828 -0.7948 1.2125 18 6 3.4674 -1.2455 0.6837 19 7 3.2471 -1.5462 -0.7426 20 6 4.0068 -2.3911 -1.5068 21 1 3.6138 -2.7811 -2.4340 22 6 5.2822 -2.7464 -1.0896 23 7 5.8386 -3.8505 -1.5411 24 14 6.2089 -1.6576 0.1126 25 1 5.8042 -1.9964 1.5005 26 1 7.6691 -1.8773 -0.0449 27 1 5.8901 -0.2336 -0.1624 28 6 2.0761 -0.7891 -1.2086 29 1 -0.3633 0.5247 -0.8836 30 1 -0.3633 -1.0276 -0.0125 31 1 -0.3633 0.5029 0.8962 32 1 2.5903 1.6843 0.7395 33 1 1.4965 4.3780 -2.9054 34 1 0.6962 7.1216 -1.7123 35 1 1.7332 8.5406 -1.3486 36 1 1.8234 9.2087 -3.6622 37 1 0.1431 8.5949 -3.5409 38 1 3.6002 7.1015 -4.3459 39 1 2.7149 5.5774 -4.0682 40 1 2.1887 -0.1515 2.0859 41 1 1.4515 -1.6546 1.4366 42 1 3.8031 -2.1379 1.2120 43 1 4.1955 -0.4419 0.7940 44 1 6.7297 -4.0990 -1.2492 45 1 1.3140 -1.4755 -1.5781 46 1 2.3712 -0.0991 -1.9991 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046756708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:52 Heat of formation + Delta-G solvation = 30.439015 kcal Electronic energy + Delta-G solvation = -29521.212712 eV Core-core repulsion = 25448.371664 eV Total energy + Delta-G solvation = -4072.841048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.45053 -41.26467 -40.44445 -38.98705 -35.89829 -35.68510 -33.96238 -32.56454 -32.32495 -31.32882 -30.52435 -29.91642 -27.91399 -25.79722 -25.05786 -24.55759 -23.62638 -22.78060 -22.07136 -21.96147 -20.46449 -19.53122 -18.87041 -17.75962 -17.38686 -17.28468 -17.19311 -17.06991 -16.62864 -16.12518 -15.87052 -15.77065 -15.61921 -15.35737 -15.01798 -14.75647 -14.17700 -13.96448 -13.87934 -13.81131 -13.53201 -13.41878 -13.22707 -13.09362 -13.03678 -12.90171 -12.60476 -12.53237 -12.34467 -12.24115 -12.03256 -11.98079 -11.84617 -11.50588 -11.42869 -11.00477 -10.80341 -10.78771 -10.47572 -10.07587 -9.06533 -8.19997 -5.46054 -0.00899 0.53785 0.85161 1.26261 1.36434 1.45260 2.03031 2.21536 2.38456 2.68281 3.01417 3.04781 3.15831 3.29284 3.32659 3.46569 3.60939 3.67665 3.82079 3.83817 3.87965 4.05534 4.09895 4.18661 4.38123 4.39808 4.50344 4.52335 4.62002 4.72380 4.75944 4.76957 4.82092 4.85007 4.86614 4.87273 5.00866 5.05540 5.18531 5.31115 5.35602 5.59946 5.65263 5.66974 6.07743 6.41322 6.73766 6.80215 7.13069 7.51743 8.08206 9.00213 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016083 B = 0.002965 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.532542 B = 9440.328861 C = 9974.504284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.167 3.833 3 N -0.695 5.695 4 C 0.604 3.396 5 O -0.556 6.556 6 C -0.116 4.116 7 C 0.106 3.894 8 N -0.342 5.342 9 C 0.108 3.892 10 H 0.151 0.849 11 C -0.159 4.159 12 C 0.047 3.953 13 O -0.390 6.390 14 C 0.036 3.964 15 N -0.076 5.076 16 N -0.221 5.221 17 C -0.115 4.115 18 C 0.100 3.900 19 N -0.625 5.625 20 C -0.235 4.235 21 H 0.055 0.945 22 C -0.036 4.036 23 N -0.956 5.956 24 Si 0.949 3.051 25 H -0.260 1.260 26 H -0.308 1.308 27 H -0.279 1.279 28 C 0.133 3.867 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.411 0.589 33 H 0.223 0.777 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.048 0.952 43 H 0.020 0.980 44 H 0.263 0.737 45 H 0.038 0.962 46 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.767 29.449 2.626 31.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.081 3.919 3 N -0.346 5.346 4 C 0.389 3.611 5 O -0.433 6.433 6 C -0.256 4.256 7 C -0.051 4.051 8 N -0.127 5.127 9 C 0.007 3.993 10 H 0.169 0.831 11 C -0.197 4.197 12 C -0.029 4.029 13 O -0.309 6.309 14 C -0.042 4.042 15 N -0.056 5.056 16 N -0.095 5.095 17 C -0.153 4.153 18 C -0.025 4.025 19 N -0.352 5.352 20 C -0.363 4.363 21 H 0.073 0.927 22 C -0.230 4.230 23 N -0.603 5.603 24 Si 0.777 3.223 25 H -0.185 1.185 26 H -0.237 1.237 27 H -0.205 1.205 28 C 0.008 3.992 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.248 0.752 33 H 0.239 0.761 34 H 0.095 0.905 35 H 0.137 0.863 36 H 0.111 0.889 37 H 0.131 0.869 38 H 0.125 0.875 39 H 0.107 0.893 40 H 0.130 0.870 41 H 0.124 0.876 42 H 0.066 0.934 43 H 0.038 0.962 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -11.331 29.540 2.857 31.767 hybrid contribution 0.918 -0.241 -0.345 1.010 sum -10.413 29.299 2.512 31.196 Atomic orbital electron populations 1.21968 0.91072 1.03487 1.03324 1.21309 0.95163 0.80027 0.95376 1.45775 1.53487 1.11941 1.23391 1.16919 0.79261 0.82852 0.82086 1.90774 1.40287 1.76331 1.35952 1.21455 1.09638 0.97803 0.96681 1.23529 0.95716 0.85265 1.00597 1.50733 1.33992 1.11447 1.16544 1.23532 1.04088 0.79840 0.91806 0.83095 1.23646 0.95314 1.00278 1.00501 1.23828 1.03748 0.90175 0.85164 1.88981 1.42727 1.48660 1.50493 1.23677 0.90283 1.00709 0.89572 1.81902 1.18604 1.08720 0.96342 1.74608 1.09745 1.02124 1.23016 1.23069 0.95078 1.00769 0.96398 1.22117 0.97472 0.97929 0.84951 1.44905 1.32513 1.51287 1.06506 1.18576 0.95494 1.17751 1.04527 0.92748 1.25615 0.97561 0.98491 1.01361 1.69967 1.16961 1.23513 1.49874 0.85912 0.76591 0.79627 0.80143 1.18504 1.23653 1.20548 1.21787 0.88921 0.92819 0.95700 0.92040 0.90413 0.90062 0.75247 0.76051 0.90527 0.86250 0.88932 0.86908 0.87499 0.89299 0.86957 0.87605 0.93356 0.96197 0.92806 0.94409 0.96437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 8.45 71.99 0.61 -3.09 16 2 C 0.17 5.41 0.81 4.79 0.00 5.41 16 3 N -0.70 -21.64 5.14 -420.67 -2.16 -23.80 16 4 C 0.60 19.57 7.04 86.69 0.61 20.18 16 5 O -0.56 -20.29 13.78 -4.03 -0.06 -20.34 16 6 C -0.12 -3.25 6.99 40.82 0.29 -2.97 16 7 C 0.11 2.26 9.99 83.85 0.84 3.10 16 8 N -0.34 -6.17 3.59 -321.86 -1.16 -7.33 16 9 C 0.11 1.02 4.18 45.98 0.19 1.21 16 10 H 0.15 0.84 8.14 -2.39 -0.02 0.82 16 11 C -0.16 -0.99 6.88 31.89 0.22 -0.77 16 12 C 0.05 0.25 7.72 72.66 0.56 0.81 16 13 O -0.39 -4.71 11.52 -148.98 -1.72 -6.43 16 14 C 0.04 0.34 7.21 72.35 0.52 0.86 16 15 N -0.08 -1.87 13.78 37.02 0.51 -1.36 16 16 N -0.22 -6.31 12.04 -50.00 -0.60 -6.91 16 17 C -0.11 -3.44 6.09 31.99 0.19 -3.24 16 18 C 0.10 4.23 4.67 86.86 0.41 4.64 16 19 N -0.63 -31.75 3.21 -691.98 -2.22 -33.97 16 20 C -0.23 -14.32 10.57 84.03 0.89 -13.43 16 21 H 0.05 3.62 8.06 -2.91 -0.02 3.60 16 22 C -0.04 -2.21 5.43 84.86 0.46 -1.75 16 23 N -0.96 -62.40 13.97 21.65 0.30 -62.10 16 24 Si 0.95 48.96 24.27 68.60 1.66 50.62 16 25 H -0.26 -12.23 6.49 99.48 0.65 -11.59 16 26 H -0.31 -16.00 7.11 99.48 0.71 -15.29 16 27 H -0.28 -14.37 6.66 99.48 0.66 -13.70 16 28 C 0.13 5.80 6.13 86.73 0.53 6.33 16 29 H 0.06 1.82 6.37 -2.39 -0.02 1.81 16 30 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.41 11.67 8.16 -92.71 -0.76 10.91 16 33 H 0.22 3.77 7.45 -2.91 -0.02 3.75 16 34 H 0.08 0.73 8.07 -2.38 -0.02 0.72 16 35 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.09 0.12 8.14 -2.38 -0.02 0.10 16 37 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.09 1.06 6.36 -2.39 -0.02 1.04 16 40 H 0.11 2.53 8.04 -2.39 -0.02 2.51 16 41 H 0.11 2.86 8.05 -2.39 -0.02 2.84 16 42 H 0.05 2.17 6.63 -2.39 -0.02 2.16 16 43 H 0.02 0.89 5.58 -2.39 -0.01 0.87 16 44 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 45 H 0.04 1.66 7.80 -2.38 -0.02 1.64 16 46 H 0.02 0.85 6.47 -2.39 -0.02 0.84 16 Total: -1.00 -82.08 366.05 1.04 -81.03 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.16 Total: 13.30 kcal Atomic # 6 Polarization: 10.97 SS G_CDS: 6.32 Total: 17.29 kcal Atomic # 7 Polarization: -130.15 SS G_CDS: -5.33 Total: -135.47 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -1.77 Total: -26.77 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 1.66 Total: 50.62 kcal Total: -82.08 1.04 -81.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046756708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.472 kcal (2) G-P(sol) polarization free energy of solvation -82.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds