Wall clock time and date at job start Tue Mar 31 2020 18:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.49847 * 2 1 4 4 C 1.53039 * 109.49604 * 239.90440 * 2 1 3 5 5 C 1.53079 * 109.65903 * 301.34923 * 4 2 1 6 6 C 1.53191 * 109.29394 * 298.84491 * 5 4 2 7 7 H 1.08994 * 109.58690 * 294.56180 * 6 5 4 8 8 C 1.53001 * 109.58197 * 174.27946 * 6 5 4 9 9 N 1.46503 * 109.46898 * 180.23759 * 8 6 5 10 10 C 1.34777 * 119.99987 * 179.97438 * 9 8 6 11 11 O 1.21509 * 120.00285 * 0.02562 * 10 9 8 12 12 C 1.48161 * 119.99695 * 180.02562 * 10 9 8 13 13 C 1.39894 * 120.90906 * 359.97438 * 12 10 9 14 14 C 1.38044 * 119.06706 * 180.02562 * 13 12 10 15 15 N 1.31882 * 120.93351 * 359.97438 * 14 13 12 16 16 C 1.31966 * 122.01135 * 359.97438 * 15 14 13 17 17 F 1.35102 * 119.58453 * 180.02562 * 16 15 14 18 18 C 1.38520 * 120.82767 * 0.02562 * 16 15 14 19 19 N 1.46929 * 108.89223 * 54.42494 * 6 5 4 20 20 C 1.36938 * 120.63032 * 126.43717 * 19 6 5 21 21 H 1.07996 * 119.99708 * 328.28379 * 20 19 6 22 22 C 1.38810 * 119.99782 * 148.28499 * 20 19 6 23 23 N 1.31623 * 119.99964 * 345.46141 * 22 20 19 24 24 Si 1.86792 * 120.00065 * 165.46373 * 22 20 19 25 25 H 1.48496 * 109.47438 * 89.99635 * 24 22 20 26 26 H 1.48498 * 109.47235 * 209.99973 * 24 22 20 27 27 H 1.48498 * 109.47117 * 329.99780 * 24 22 20 28 28 C 1.46927 * 118.73596 * 306.45846 * 19 6 5 29 29 H 1.09005 * 109.47398 * 299.93620 * 1 2 3 30 30 H 1.09003 * 109.47434 * 59.93307 * 1 2 3 31 31 H 1.08997 * 109.47603 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47338 * 180.02562 * 3 2 1 33 33 H 1.08995 * 109.47433 * 300.06809 * 3 2 1 34 34 H 1.09005 * 109.46872 * 60.06594 * 3 2 1 35 35 H 1.09006 * 109.45986 * 61.43486 * 4 2 1 36 36 H 1.08998 * 109.46429 * 181.40781 * 4 2 1 37 37 H 1.09003 * 109.61909 * 178.82746 * 5 4 2 38 38 H 1.09001 * 109.38711 * 58.72408 * 5 4 2 39 39 H 1.08993 * 109.47374 * 60.24161 * 8 6 5 40 40 H 1.08996 * 109.47567 * 300.23788 * 8 6 5 41 41 H 0.97001 * 120.00168 * 0.02562 * 9 8 6 42 42 H 1.08002 * 120.46767 * 0.03950 * 13 12 10 43 43 H 1.07996 * 119.53495 * 180.25335 * 14 13 12 44 44 H 1.07999 * 120.51012 * 179.97438 * 18 16 15 45 45 H 0.96996 * 119.99945 * 180.02562 * 23 22 20 46 46 H 1.09000 * 109.58425 * 173.39596 * 28 19 6 47 47 H 1.08995 * 109.58604 * 293.68033 * 28 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4422 0.0000 4 6 2.0407 -0.7234 -1.2482 5 6 1.5056 -2.1575 -1.2674 6 6 2.0139 -2.9041 -0.0301 7 1 3.0977 -3.0065 -0.0847 8 6 1.3701 -4.2906 0.0327 9 7 1.8535 -5.0001 1.2198 10 6 1.4184 -6.2484 1.4825 11 8 0.6256 -6.7855 0.7347 12 6 1.9069 -6.9657 2.6834 13 6 2.8202 -6.3657 3.5569 14 6 3.2505 -7.0689 4.6641 15 7 2.8126 -8.2895 4.9043 16 6 1.9506 -8.8928 4.1078 17 9 1.5341 -10.1441 4.4012 18 6 1.4674 -8.2592 2.9747 19 7 1.6515 -2.1379 1.1701 20 6 0.9630 -2.7307 2.1947 21 1 0.2578 -3.5213 1.9851 22 6 1.1716 -2.3153 3.5027 23 7 2.2155 -1.5699 3.7980 24 14 -0.0291 -2.8143 4.8438 25 1 0.4068 -4.1001 5.4453 26 1 -0.0640 -1.7638 5.8928 27 1 -1.3847 -2.9756 4.2596 28 6 2.0413 -0.7235 1.2498 29 1 -0.3634 0.5129 0.8906 30 1 -0.3634 0.5149 -0.8894 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1307 1.4417 -0.0005 33 1 1.6766 1.9566 -0.8893 34 1 1.6785 1.9558 0.8906 35 1 1.6986 -0.1963 -2.1389 36 1 3.1304 -0.7450 -1.2351 37 1 1.8528 -2.6656 -2.1671 38 1 0.4158 -2.1372 -1.2580 39 1 1.6354 -4.8552 -0.8611 40 1 0.2866 -4.1860 0.0881 41 1 2.4862 -4.5713 1.8171 42 1 3.1832 -5.3662 3.3678 43 1 3.9522 -6.6114 5.3457 44 1 0.7623 -8.7579 2.3262 45 1 2.3614 -1.2800 4.7120 46 1 1.6007 -0.2726 2.1389 47 1 3.1273 -0.6462 1.3007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089618296.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:35 Heat of formation + Delta-G solvation = -25.323988 kcal Electronic energy + Delta-G solvation = -30275.808283 eV Core-core repulsion = 26180.629208 eV Total energy + Delta-G solvation = -4095.179075 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.02130 -40.41260 -39.12010 -38.32577 -35.26058 -33.38954 -32.95052 -32.10176 -30.82958 -30.10852 -27.71607 -26.67017 -25.58500 -24.99083 -23.58856 -23.11948 -22.32174 -20.36530 -20.22451 -18.34544 -17.99708 -17.27668 -16.63948 -16.25026 -16.10429 -15.68357 -15.58724 -15.25658 -14.53240 -14.26835 -14.18650 -13.92048 -13.84474 -13.60265 -13.43408 -13.32467 -13.14055 -12.96394 -12.51919 -12.28806 -12.04446 -11.76929 -11.48482 -11.37888 -11.22312 -10.95827 -10.88409 -10.70828 -10.51318 -10.23851 -10.19027 -10.07770 -9.98656 -9.87725 -9.62059 -9.49029 -9.33677 -9.06726 -8.72014 -8.41610 -6.75282 -5.96423 -3.43030 0.65131 0.88039 3.02320 3.22989 3.31741 3.33358 3.37736 3.61984 3.79610 4.32145 4.55091 4.73206 4.86583 4.91936 5.09543 5.18970 5.37627 5.37669 5.46313 5.52731 5.63142 5.67040 5.72212 5.79109 5.93109 5.97953 6.02612 6.09427 6.16219 6.24683 6.28640 6.36964 6.40452 6.41586 6.44628 6.51102 6.58323 6.82544 6.83562 6.89090 6.99753 7.05134 7.29426 7.53563 7.55917 7.67765 7.97771 8.28962 8.55068 9.04417 9.65809 10.24740 11.09497 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.015173 B = 0.003914 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.967983 B = 7152.706225 C = 8172.011563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.095 4.095 3 C -0.134 4.134 4 C -0.096 4.096 5 C -0.130 4.130 6 C 0.160 3.840 7 H 0.033 0.967 8 C 0.133 3.867 9 N -0.678 5.678 10 C 0.548 3.452 11 O -0.549 6.549 12 C -0.050 4.050 13 C -0.141 4.141 14 C 0.133 3.867 15 N -0.505 5.505 16 C 0.296 3.704 17 F -0.113 7.113 18 C -0.142 4.142 19 N -0.585 5.585 20 C -0.254 4.254 21 H 0.068 0.932 22 C 0.014 3.986 23 N -0.894 5.894 24 Si 0.885 3.115 25 H -0.285 1.285 26 H -0.289 1.289 27 H -0.279 1.279 28 C 0.188 3.812 29 H 0.044 0.956 30 H 0.031 0.969 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.042 0.958 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.417 0.583 42 H 0.158 0.842 43 H 0.174 0.826 44 H 0.158 0.842 45 H 0.255 0.745 46 H 0.083 0.917 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.913 -2.685 -4.804 6.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.096 4.096 3 C -0.192 4.192 4 C -0.133 4.133 5 C -0.170 4.170 6 C 0.053 3.947 7 H 0.050 0.950 8 C 0.010 3.990 9 N -0.329 5.329 10 C 0.333 3.667 11 O -0.429 6.429 12 C -0.061 4.061 13 C -0.162 4.162 14 C -0.023 4.023 15 N -0.220 5.220 16 C 0.143 3.857 17 F -0.092 7.092 18 C -0.164 4.164 19 N -0.309 5.309 20 C -0.383 4.383 21 H 0.085 0.915 22 C -0.186 4.186 23 N -0.537 5.537 24 Si 0.714 3.286 25 H -0.212 1.212 26 H -0.215 1.215 27 H -0.205 1.205 28 C 0.063 3.937 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.256 0.744 42 H 0.175 0.825 43 H 0.191 0.809 44 H 0.176 0.824 45 H 0.065 0.935 46 H 0.101 0.899 47 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 2.681 -3.455 -4.443 6.234 hybrid contribution -0.761 0.333 0.583 1.015 sum 1.920 -3.122 -3.860 5.323 Atomic orbital electron populations 1.21704 0.95119 1.02085 0.99284 1.21231 0.95861 0.94409 0.98131 1.21760 1.00380 0.96467 1.00560 1.21411 0.99621 0.95273 0.97018 1.22010 1.01373 0.96090 0.97519 1.20737 0.96044 0.89143 0.88762 0.94987 1.21388 0.99867 0.91814 0.85977 1.45943 1.45952 1.13522 1.27453 1.17948 0.82026 0.82192 0.84516 1.90735 1.34946 1.67829 1.49375 1.20377 0.96045 0.93816 0.95903 1.22616 0.96751 1.02036 0.94798 1.22518 0.96823 0.87682 0.95308 1.66862 1.11635 1.12389 1.31105 1.17959 0.94343 0.81598 0.91836 1.91619 1.87673 1.36632 1.93295 1.21889 1.01930 0.95276 0.97327 1.44022 1.65545 1.05686 1.15600 1.19129 1.16060 1.18353 0.84794 0.91480 1.25025 0.96389 1.00084 0.97090 1.69999 1.26126 1.38954 1.18666 0.86576 0.81813 0.77957 0.82247 1.21198 1.21455 1.20467 1.20782 0.96081 0.83025 0.93826 0.93655 0.95016 0.91595 0.93314 0.93935 0.93050 0.93594 0.92918 0.93022 0.91595 0.92255 0.91173 0.74411 0.82485 0.80904 0.82438 0.93483 0.89883 0.96345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.09 7.99 37.16 0.30 -1.80 16 2 C -0.09 -1.57 0.77 -154.39 -0.12 -1.69 16 3 C -0.13 -1.98 8.48 37.15 0.32 -1.66 16 4 C -0.10 -1.43 4.71 -26.67 -0.13 -1.56 16 5 C -0.13 -1.97 5.04 -26.59 -0.13 -2.11 16 6 C 0.16 2.76 3.00 -67.60 -0.20 2.56 16 7 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 8 C 0.13 2.26 4.43 -4.04 -0.02 2.25 16 9 N -0.68 -11.68 3.82 -61.15 -0.23 -11.92 16 10 C 0.55 9.69 7.80 -12.18 -0.10 9.60 16 11 O -0.55 -11.00 16.44 5.36 0.09 -10.91 16 12 C -0.05 -0.79 5.91 -104.66 -0.62 -1.41 16 13 C -0.14 -2.01 9.61 -39.03 -0.38 -2.39 16 14 C 0.13 1.77 11.17 -17.60 -0.20 1.58 16 15 N -0.50 -7.63 10.35 -13.64 -0.14 -7.77 16 16 C 0.30 4.45 8.41 -17.39 -0.15 4.30 16 17 F -0.11 -1.65 17.29 2.25 0.04 -1.61 16 18 C -0.14 -2.12 9.66 -38.94 -0.38 -2.50 16 19 N -0.59 -11.89 2.41 -164.78 -0.40 -12.28 16 20 C -0.25 -5.72 6.94 -15.06 -0.10 -5.83 16 21 H 0.07 1.58 5.90 -52.49 -0.31 1.28 16 22 C 0.01 0.34 4.95 -17.43 -0.09 0.25 16 23 N -0.89 -22.17 11.32 55.49 0.63 -21.54 16 24 Si 0.88 19.94 29.58 -169.99 -5.03 14.92 16 25 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 C 0.19 3.83 3.95 -3.71 -0.01 3.82 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 1.21 5.98 -51.93 -0.31 0.90 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.05 6.35 -51.93 -0.33 0.72 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.07 1.32 7.41 -51.93 -0.38 0.93 16 41 H 0.42 7.28 5.54 -40.82 -0.23 7.05 16 42 H 0.16 2.16 6.53 -52.49 -0.34 1.82 16 43 H 0.17 1.76 8.06 -52.49 -0.42 1.34 16 44 H 0.16 2.21 7.74 -52.49 -0.41 1.81 16 45 H 0.25 6.31 8.31 -40.82 -0.34 5.97 16 46 H 0.08 1.96 6.27 -51.93 -0.33 1.63 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 372.97 15.07 5.62 5.62 Total: -1.00 -26.15 372.97 -8.27 -34.42 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.84 Total: 7.67 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -2.00 Total: 3.40 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.14 Total: -53.51 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.92 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -26.15 -8.27 -34.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089618296.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.096 kcal (2) G-P(sol) polarization free energy of solvation -26.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds