Wall clock time and date at job start Tue Mar 31 2020 19:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39678 * 127.32028 * 2 1 4 4 N 1.30866 * 107.86072 * 179.83219 * 3 2 1 5 5 N 1.28447 * 110.92407 * 0.44942 * 4 3 2 6 6 C 1.46504 * 125.18565 * 179.73430 * 5 4 3 7 7 C 1.36598 * 109.62211 * 359.71666 * 5 4 3 8 8 C 1.47160 * 126.88126 * 180.02562 * 7 5 4 9 9 O 1.21624 * 120.00176 * 92.93709 * 8 7 5 10 10 N 1.34771 * 120.00064 * 272.93191 * 8 7 5 11 11 C 1.46507 * 120.00446 * 185.29733 * 10 8 7 12 12 C 1.52995 * 109.47443 * 180.02562 * 11 10 8 13 13 C 1.53932 * 113.73359 * 271.72845 * 12 11 10 14 14 N 1.47963 * 86.17923 * 221.92205 * 13 12 11 15 15 C 1.46900 * 110.99986 * 137.58561 * 14 13 12 16 16 C 1.50691 * 109.47652 * 70.63770 * 15 14 13 17 17 O 1.21293 * 119.99822 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00674 * 180.02562 * 16 15 14 19 19 C 1.37088 * 120.00710 * 180.02562 * 18 16 15 20 20 H 1.07998 * 119.99799 * 359.97438 * 19 18 16 21 21 C 1.38956 * 120.00338 * 180.02562 * 19 18 16 22 22 N 1.31410 * 119.99817 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00188 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46869 * 359.97438 * 23 21 19 25 25 H 1.48491 * 109.47068 * 119.99554 * 23 21 19 26 26 H 1.48502 * 109.47063 * 239.99878 * 23 21 19 27 27 C 1.47959 * 90.76296 * 24.68854 * 14 13 12 28 28 H 1.09006 * 109.47011 * 269.68635 * 1 2 3 29 29 H 1.08994 * 109.47394 * 149.68790 * 1 2 3 30 30 H 1.09000 * 109.47573 * 29.68171 * 1 2 3 31 31 H 1.07997 * 126.06751 * 359.97423 * 3 2 1 32 32 H 1.08991 * 109.47521 * 274.72564 * 6 5 4 33 33 H 1.09001 * 109.46817 * 34.72601 * 6 5 4 34 34 H 1.08999 * 109.46652 * 154.72190 * 6 5 4 35 35 H 0.97005 * 120.00342 * 5.29555 * 10 8 7 36 36 H 1.09005 * 109.46584 * 300.00205 * 11 10 8 37 37 H 1.08996 * 109.46834 * 59.99713 * 11 10 8 38 38 H 1.09002 * 112.93638 * 43.42946 * 12 11 10 39 39 H 1.09004 * 113.76115 * 336.23867 * 13 12 11 40 40 H 1.09000 * 113.76364 * 107.60448 * 13 12 11 41 41 H 1.08997 * 109.46792 * 190.64165 * 15 14 13 42 42 H 1.09009 * 109.47112 * 310.63447 * 15 14 13 43 43 H 0.97010 * 119.99473 * 359.97438 * 18 16 15 44 44 H 0.97000 * 120.00228 * 180.02562 * 22 21 19 45 45 H 1.09005 * 113.75615 * 220.99630 * 27 14 13 46 46 H 1.08996 * 113.75850 * 89.63041 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3537 1.1108 0.0000 4 7 3.5877 0.6748 0.0036 5 7 3.6205 -0.6092 -0.0034 6 6 4.8391 -1.4225 -0.0075 7 6 2.3460 -1.1007 -0.0061 8 6 1.9455 -2.5167 -0.0134 9 8 1.7279 -3.0925 1.0356 10 7 1.8197 -3.1754 -1.1824 11 6 1.3098 -4.5488 -1.1982 12 6 1.2674 -5.0605 -2.6394 13 6 -0.0484 -4.7412 -3.3717 14 7 0.0334 -6.1165 -3.9112 15 6 -1.2813 -6.7715 -3.8845 16 6 -2.1782 -6.1402 -4.9179 17 8 -1.7632 -5.2334 -5.6084 18 7 -3.4417 -6.5823 -5.0743 19 6 -4.2575 -6.0083 -6.0147 20 1 -3.8877 -5.2015 -6.6300 21 6 -5.5603 -6.4638 -6.1755 22 7 -6.0104 -7.4452 -5.4264 23 14 -6.6721 -5.6812 -7.4564 24 1 -5.9321 -4.6046 -8.1627 25 1 -7.1013 -6.7119 -8.4354 26 1 -7.8667 -5.1044 -6.7890 27 6 0.8603 -6.5402 -2.7597 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3634 -0.8871 -0.5186 30 1 -0.3634 0.8928 -0.5089 31 1 2.0450 2.1457 -0.0004 32 1 5.1886 -1.5481 -1.0322 33 1 5.6100 -0.9248 0.5809 34 1 4.6252 -2.3995 0.4259 35 1 2.0668 -2.7403 -2.0134 36 1 1.9658 -5.1867 -0.6057 37 1 0.3053 -4.5683 -0.7756 38 1 2.1612 -4.8037 -3.2079 39 1 -0.8950 -4.5809 -2.7040 40 1 0.0487 -3.9652 -4.1310 41 1 -1.1632 -7.8323 -4.1053 42 1 -1.7261 -6.6534 -2.8964 43 1 -3.7737 -7.3073 -4.5218 44 1 -6.9197 -7.7635 -5.5388 45 1 1.6836 -7.2015 -3.0301 46 1 0.2796 -6.9062 -1.9130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267687708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:57 Heat of formation + Delta-G solvation = 45.391521 kcal Electronic energy + Delta-G solvation = -28111.919400 eV Core-core repulsion = 24039.726741 eV Total energy + Delta-G solvation = -4072.192659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.82468 -40.35867 -39.41502 -37.74962 -35.08180 -34.33666 -33.92185 -32.34022 -31.37771 -30.80898 -28.88753 -27.37190 -26.44956 -26.04048 -24.98035 -23.34465 -22.22354 -21.26318 -20.49990 -19.52108 -19.22163 -18.19169 -17.84937 -16.94832 -16.33478 -16.26070 -16.10544 -15.53364 -15.28697 -15.12087 -14.64990 -14.55911 -14.14178 -13.90737 -13.72495 -13.68031 -13.60676 -13.35018 -13.02145 -12.87088 -12.79543 -12.56311 -12.42709 -12.17155 -11.77626 -11.52430 -11.42982 -11.11627 -10.95362 -10.75189 -10.69439 -10.41587 -10.35718 -10.23842 -9.53922 -9.49900 -9.45858 -8.98199 -8.70651 -8.26575 -7.98844 -6.43994 -3.84841 1.33910 1.75275 2.34463 2.37284 2.85557 3.14617 3.25388 3.32417 3.85315 3.93494 4.07977 4.16031 4.23243 4.36475 4.54658 4.62632 4.70714 4.82913 4.88940 4.90643 5.01587 5.08594 5.20092 5.27835 5.29790 5.33521 5.44690 5.47493 5.52519 5.67229 5.69212 5.72983 5.78547 5.81074 5.91939 6.02676 6.22519 6.24005 6.25853 6.39603 6.57228 7.01872 7.15292 7.53162 7.70186 7.73393 8.03425 8.58692 9.15669 9.51610 10.03010 10.73811 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015741 B = 0.002132 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.404310 B =13131.304550 C =14175.655975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.152 4.152 3 C 0.006 3.994 4 N -0.283 5.283 5 N -0.275 5.275 6 C 0.087 3.913 7 C -0.036 4.036 8 C 0.593 3.407 9 O -0.521 6.521 10 N -0.711 5.711 11 C 0.127 3.873 12 C -0.135 4.135 13 C 0.026 3.974 14 N -0.453 5.453 15 C 0.010 3.990 16 C 0.443 3.557 17 O -0.580 6.580 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.281 1.281 27 C 0.009 3.991 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.187 0.813 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.406 0.594 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.091 0.909 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.426 8.909 12.600 24.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.163 4.163 3 C -0.172 4.172 4 N -0.114 5.114 5 N -0.063 5.063 6 C -0.054 4.054 7 C -0.164 4.164 8 C 0.375 3.625 9 O -0.395 6.395 10 N -0.363 5.363 11 C 0.003 3.997 12 C -0.154 4.154 13 C -0.103 4.103 14 N -0.175 5.175 15 C -0.122 4.122 16 C 0.228 3.772 17 O -0.464 6.464 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.207 1.207 27 C -0.121 4.121 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.204 0.796 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.241 0.759 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.123 0.877 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.072 0.928 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.110 0.890 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 19.805 9.115 12.213 24.990 hybrid contribution -1.955 -0.214 0.116 1.970 sum 17.850 8.901 12.329 23.449 Atomic orbital electron populations 1.20163 0.88135 1.03041 1.02533 1.20734 0.97011 0.90622 1.07908 1.23478 0.87643 1.00005 1.06044 1.73143 1.24522 0.93153 1.20562 1.45518 1.05388 1.03756 1.51642 1.22185 0.83924 0.94612 1.04657 1.21312 0.86160 0.94603 1.14337 1.17001 0.77770 0.83538 0.84143 1.90863 1.49646 1.67411 1.31605 1.46021 1.65754 1.15669 1.08873 1.21566 1.00049 0.81127 0.96927 1.23355 1.00464 0.97140 0.94437 1.23881 0.94772 0.94174 0.97449 1.68406 1.11157 1.03013 1.34964 1.22467 0.90987 1.00244 0.98523 1.19675 0.83089 0.86952 0.87436 1.90518 1.74631 1.32246 1.48991 1.41884 1.10100 1.33569 1.34556 1.19738 0.92658 1.16783 1.13601 0.87891 1.25271 0.97638 0.96581 0.98505 1.69617 1.17991 1.26904 1.39770 0.85803 0.79566 0.78985 0.80014 1.19215 1.20722 1.20742 1.23967 0.98679 0.95446 0.93963 0.91046 0.91636 0.90723 0.79629 0.89416 0.88283 0.88924 0.75894 0.90702 0.90775 0.87654 0.91364 0.88729 0.89106 0.92759 0.77496 0.91900 0.89045 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.28 36.00 0.37 -0.34 16 2 C -0.15 -1.57 6.30 -104.03 -0.65 -2.23 16 3 C 0.01 0.06 12.00 -17.43 -0.21 -0.15 16 4 N -0.28 -3.04 11.90 30.59 0.36 -2.68 16 5 N -0.27 -2.68 3.75 -63.88 -0.24 -2.92 16 6 C 0.09 0.50 11.21 59.85 0.67 1.18 16 7 C -0.04 -0.39 6.71 -82.06 -0.55 -0.94 16 8 C 0.59 6.65 6.77 -12.64 -0.09 6.57 16 9 O -0.52 -7.64 17.12 5.26 0.09 -7.55 16 10 N -0.71 -6.34 5.55 -61.47 -0.34 -6.68 16 11 C 0.13 1.16 5.53 -4.04 -0.02 1.14 16 12 C -0.13 -1.31 3.94 -89.69 -0.35 -1.67 16 13 C 0.03 0.36 6.31 -2.77 -0.02 0.35 16 14 N -0.45 -7.05 5.95 -239.75 -1.43 -8.48 16 15 C 0.01 0.17 5.31 -4.98 -0.03 0.14 16 16 C 0.44 10.34 7.59 -10.99 -0.08 10.25 16 17 O -0.58 -15.48 15.12 5.55 0.08 -15.39 16 18 N -0.56 -14.21 5.29 -10.97 -0.06 -14.27 16 19 C -0.30 -8.27 9.68 -14.94 -0.14 -8.41 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.42 13.05 55.50 0.72 -23.70 16 23 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 27 C 0.01 0.10 7.54 -2.77 -0.02 0.08 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.62 8.07 -51.93 -0.42 0.20 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.19 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.50 7.66 -51.93 -0.40 0.11 16 35 H 0.41 3.00 8.46 -40.82 -0.35 2.65 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.77 7.84 -51.93 -0.41 0.36 16 38 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.98 7.53 -51.93 -0.39 0.59 16 40 H 0.09 1.49 8.09 -51.93 -0.42 1.07 16 41 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 42 H 0.05 0.84 7.69 -51.92 -0.40 0.44 16 43 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 44 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.07 0.70 7.75 -51.93 -0.40 0.30 16 LS Contribution 392.91 15.07 5.92 5.92 Total: -1.00 -35.46 392.91 -7.95 -43.41 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -6.82 Total: 9.99 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -1.22 Total: 6.44 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.98 Total: -58.73 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: 0.17 Total: -22.95 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.46 -7.95 -43.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267687708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.800 kcal (2) G-P(sol) polarization free energy of solvation -35.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds