Wall clock time and date at job start Tue Mar 31 2020 18:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33318 * 126.10913 * 2 1 4 4 C 1.30852 * 109.69231 * 180.02562 * 3 2 1 5 5 N 1.34504 * 109.16013 * 359.97438 * 4 3 2 6 6 H 0.97001 * 126.47075 * 179.97438 * 5 4 3 7 7 C 1.36670 * 126.10997 * 180.31159 * 2 1 3 8 8 C 1.46761 * 126.84087 * 0.03654 * 7 2 1 9 9 O 1.21688 * 120.00286 * 0.16108 * 8 7 2 10 10 N 1.34778 * 120.00050 * 180.15869 * 8 7 2 11 11 C 1.46501 * 120.00372 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47212 * 180.02562 * 11 10 8 13 13 H 1.08998 * 110.62900 * 308.10950 * 12 11 10 14 14 C 1.55148 * 110.70628 * 71.40057 * 12 11 10 15 15 C 1.54903 * 101.65152 * 154.03671 * 14 12 11 16 16 N 1.47844 * 104.79748 * 322.92814 * 15 14 12 17 17 C 1.46901 * 110.99785 * 146.36514 * 16 15 14 18 18 C 1.50696 * 109.47247 * 69.15991 * 17 16 15 19 19 O 1.21297 * 119.99890 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00065 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99933 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99975 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00011 * 179.97438 * 21 20 18 24 24 N 1.31419 * 120.00149 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00230 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47106 * 59.99866 * 25 23 21 27 27 H 1.48504 * 109.47459 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47068 * 300.00176 * 25 23 21 29 29 C 1.47450 * 108.56678 * 24.09865 * 16 15 14 30 30 H 1.08994 * 109.46808 * 89.97475 * 1 2 3 31 31 H 1.08997 * 109.46502 * 209.97695 * 1 2 3 32 32 H 1.09002 * 109.46847 * 329.97450 * 1 2 3 33 33 H 1.07999 * 125.42354 * 179.97438 * 4 3 2 34 34 H 0.97000 * 119.99695 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.46807 * 300.00224 * 11 10 8 36 36 H 1.08995 * 109.46761 * 60.00073 * 11 10 8 37 37 H 1.09006 * 110.99174 * 272.12776 * 14 12 11 38 38 H 1.09001 * 110.98621 * 35.94136 * 14 12 11 39 39 H 1.09003 * 110.36811 * 204.09916 * 15 14 12 40 40 H 1.08997 * 110.46834 * 81.80670 * 15 14 12 41 41 H 1.09005 * 109.46983 * 189.15838 * 17 16 15 42 42 H 1.09001 * 109.47206 * 309.15493 * 17 16 15 43 43 H 0.96996 * 120.00280 * 359.97438 * 20 18 17 44 44 H 0.96996 * 119.99815 * 179.97438 * 24 23 21 45 45 H 1.08993 * 109.88482 * 239.60653 * 29 16 15 46 46 H 1.09003 * 110.02104 * 118.49095 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5479 0.7073 -0.0006 5 7 3.6122 -0.6362 -0.0004 6 1 4.4190 -1.1748 -0.0010 7 6 2.3125 -1.1041 -0.0060 8 6 1.8822 -2.5072 -0.0144 9 8 0.6963 -2.7800 -0.0195 10 7 2.8005 -3.4937 -0.0164 11 6 2.3710 -4.8943 -0.0242 12 6 3.6006 -5.8048 -0.0244 13 1 4.2865 -5.5237 -0.8235 14 6 4.3124 -5.7655 1.3536 15 6 5.0160 -7.1453 1.3817 16 7 4.0637 -8.0682 0.7282 17 6 4.7736 -9.1118 -0.0233 18 6 5.4664 -10.0411 0.9397 19 8 5.3779 -9.8523 2.1346 20 7 6.1843 -11.0820 0.4734 21 6 6.8150 -11.9271 1.3495 22 1 6.7362 -11.7590 2.4134 23 6 7.5547 -13.0006 0.8687 24 7 7.6501 -13.2055 -0.4259 25 14 8.4134 -14.1525 2.0624 26 1 7.4065 -14.7815 2.9544 27 1 9.1306 -15.2079 1.3028 28 1 9.3865 -13.3834 2.8792 29 6 3.1838 -7.2845 -0.1583 30 1 -0.3633 0.0005 -1.0276 31 1 -0.3632 -0.8902 0.5135 32 1 -0.3633 0.8898 0.5142 33 1 4.3971 1.3745 -0.0011 34 1 3.7458 -3.2763 -0.0120 35 1 1.7707 -5.0952 0.8631 36 1 1.7758 -5.0868 -0.9168 37 1 5.0403 -4.9551 1.3942 38 1 3.5890 -5.6794 2.1644 39 1 5.2007 -7.4561 2.4101 40 1 5.9515 -7.1075 0.8236 41 1 4.0599 -9.6765 -0.6234 42 1 5.5127 -8.6494 -0.6775 43 1 6.2547 -11.2333 -0.4821 44 1 8.1668 -13.9547 -0.7615 45 1 2.1450 -7.4064 0.1484 46 1 3.3065 -7.6124 -1.1906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663644242.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:44 Heat of formation + Delta-G solvation = -11.487600 kcal Electronic energy + Delta-G solvation = -27751.074008 eV Core-core repulsion = 23676.414886 eV Total energy + Delta-G solvation = -4074.659123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.67050 -39.95614 -39.12204 -37.69441 -35.41903 -33.95797 -33.65801 -32.20148 -31.45946 -31.15512 -29.56150 -27.89189 -27.03675 -25.25223 -24.07514 -23.23478 -21.66688 -21.04155 -20.89177 -20.01822 -19.23596 -19.12477 -17.90586 -16.82508 -16.57094 -16.20453 -15.92136 -15.72798 -15.04968 -14.90031 -14.83468 -14.52939 -14.40564 -13.96814 -13.86970 -13.66361 -13.31716 -13.24014 -13.10114 -12.78294 -12.52277 -12.42350 -12.13847 -11.78214 -11.51863 -11.34275 -11.21953 -11.01684 -10.97824 -10.86992 -10.72525 -10.48119 -10.45680 -10.25047 -10.22442 -9.56091 -9.50096 -8.91595 -8.47771 -7.99299 -7.91468 -6.43116 -3.83991 0.84538 2.37352 2.40135 2.69697 2.92061 3.18475 3.24237 3.28533 3.89118 3.98213 4.00101 4.21728 4.29606 4.36014 4.41544 4.63051 4.68409 4.79327 5.04456 5.08378 5.20165 5.22944 5.26354 5.33380 5.40834 5.49586 5.52979 5.61013 5.64868 5.68135 5.72373 5.76075 5.85882 5.93294 5.97068 6.15259 6.18614 6.26537 6.39617 6.67812 6.96877 7.19596 7.22248 7.45629 7.53438 7.73129 8.04633 8.60602 9.16814 9.53124 10.05230 10.74610 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.035156 B = 0.001668 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.255945 B =16780.218458 C =17099.164387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.099 3.901 3 N -0.500 5.500 4 C 0.222 3.778 5 N -0.556 5.556 6 H 0.422 0.578 7 C -0.096 4.096 8 C 0.595 3.405 9 O -0.520 6.520 10 N -0.727 5.727 11 C 0.133 3.867 12 C -0.125 4.125 13 H 0.080 0.920 14 C -0.125 4.125 15 C 0.053 3.947 16 N -0.504 5.504 17 C 0.040 3.960 18 C 0.444 3.556 19 O -0.578 6.578 20 N -0.566 5.566 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 C 0.051 3.949 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.217 0.783 34 H 0.393 0.607 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.041 0.959 41 H 0.088 0.912 42 H 0.048 0.952 43 H 0.391 0.609 44 H 0.272 0.728 45 H 0.081 0.919 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.472 24.882 -4.235 26.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.035 4.035 3 N -0.220 5.220 4 C -0.062 4.062 5 N -0.162 5.162 6 H 0.261 0.739 7 C -0.212 4.212 8 C 0.381 3.619 9 O -0.396 6.396 10 N -0.378 5.378 11 C 0.010 3.990 12 C -0.144 4.144 13 H 0.099 0.901 14 C -0.163 4.163 15 C -0.074 4.074 16 N -0.228 5.228 17 C -0.091 4.091 18 C 0.229 3.771 19 O -0.461 6.461 20 N -0.203 5.203 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.200 1.200 29 C -0.078 4.078 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.233 0.767 34 H 0.227 0.773 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.113 0.887 40 H 0.059 0.941 41 H 0.106 0.894 42 H 0.066 0.934 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.100 0.900 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.909 25.133 -3.157 26.537 hybrid contribution 2.542 -1.309 -0.834 2.978 sum -5.367 23.824 -3.990 24.745 Atomic orbital electron populations 1.20316 0.86370 1.03797 1.03165 1.21134 0.97023 0.86589 0.98757 1.70166 1.00493 1.30464 1.20893 1.25193 0.97477 0.82020 1.01489 1.43348 1.07972 1.08880 1.55963 0.73901 1.20939 0.84388 0.95095 1.20735 1.16801 0.85895 0.82535 0.76671 1.90846 1.15951 1.82853 1.49926 1.45896 1.09140 1.06788 1.76018 1.21423 0.96316 0.78177 1.03133 1.22680 0.96700 0.96194 0.98863 0.90122 1.22865 0.99524 0.97673 0.96281 1.23022 0.93227 0.89390 1.01793 1.63263 1.19921 1.11521 1.28085 1.22124 0.97426 0.94313 0.95251 1.19734 0.83998 0.84062 0.89310 1.90508 1.65027 1.74478 1.16105 1.41855 1.44463 1.24331 1.09613 1.19644 1.26182 1.05434 0.91591 0.87999 1.25253 0.97965 0.98221 0.96512 1.69604 1.41717 1.31127 1.11977 0.85920 0.79299 0.79363 0.79640 1.19878 1.20987 1.19974 1.22823 0.98985 0.89698 0.96293 0.90631 0.89199 0.90964 0.76707 0.77332 0.90427 0.90865 0.91422 0.90297 0.88723 0.94062 0.89354 0.93444 0.77547 0.91851 0.90037 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 9.87 36.01 0.36 -0.36 16 2 C 0.10 1.01 7.15 -82.51 -0.59 0.42 16 3 N -0.50 -4.79 11.20 -10.64 -0.12 -4.91 16 4 C 0.22 1.26 13.01 -90.57 -1.18 0.08 16 5 N -0.56 -2.83 6.07 -10.79 -0.07 -2.90 16 6 H 0.42 0.68 8.32 -40.82 -0.34 0.34 16 7 C -0.10 -0.85 7.08 -82.14 -0.58 -1.43 16 8 C 0.59 5.90 7.79 -12.82 -0.10 5.80 16 9 O -0.52 -6.82 14.83 5.20 0.08 -6.74 16 10 N -0.73 -5.39 5.47 -61.59 -0.34 -5.72 16 11 C 0.13 1.12 4.97 -4.04 -0.02 1.10 16 12 C -0.12 -1.09 2.96 -88.80 -0.26 -1.35 16 13 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 14 C -0.13 -1.25 6.44 -24.59 -0.16 -1.41 16 15 C 0.05 0.77 5.74 -2.30 -0.01 0.76 16 16 N -0.50 -7.93 4.86 -232.69 -1.13 -9.06 16 17 C 0.04 0.70 5.06 -4.98 -0.03 0.67 16 18 C 0.44 10.31 7.58 -10.99 -0.08 10.23 16 19 O -0.58 -15.39 14.61 5.54 0.08 -15.31 16 20 N -0.57 -14.17 5.29 -10.96 -0.06 -14.23 16 21 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 22 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 25 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 C 0.05 0.58 6.45 -2.83 -0.02 0.56 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.90 6.50 -51.93 -0.34 0.56 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.22 0.25 8.06 -52.49 -0.42 -0.17 16 34 H 0.39 1.87 7.71 -40.82 -0.31 1.56 16 35 H 0.08 0.76 8.00 -51.93 -0.42 0.34 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.84 7.94 -51.93 -0.41 0.42 16 39 H 0.09 1.67 7.38 -51.93 -0.38 1.28 16 40 H 0.04 0.60 7.62 -51.93 -0.40 0.21 16 41 H 0.09 1.39 8.03 -51.93 -0.42 0.97 16 42 H 0.05 0.74 7.85 -51.93 -0.41 0.33 16 43 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 44 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.08 0.91 7.82 -51.93 -0.41 0.50 16 46 H 0.06 0.60 7.56 -51.93 -0.39 0.21 16 LS Contribution 382.38 15.07 5.76 5.76 Total: -1.00 -35.69 382.38 -9.60 -45.28 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -6.59 Total: 8.41 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -2.91 Total: 7.16 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -0.99 Total: -60.44 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: 0.16 Total: -22.05 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.69 -9.60 -45.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663644242.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.796 kcal (2) G-P(sol) polarization free energy of solvation -35.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds