Wall clock time and date at job start Tue Mar 31 2020 18:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33318 * 126.10913 * 2 1 4 4 C 1.30852 * 109.69231 * 180.02562 * 3 2 1 5 5 N 1.34504 * 109.16013 * 359.97438 * 4 3 2 6 6 H 0.97001 * 126.47075 * 179.97438 * 5 4 3 7 7 C 1.36670 * 126.10997 * 180.31159 * 2 1 3 8 8 C 1.46761 * 126.84087 * 0.03654 * 7 2 1 9 9 O 1.21688 * 120.00286 * 0.16108 * 8 7 2 10 10 N 1.34778 * 120.00050 * 180.15869 * 8 7 2 11 11 C 1.46501 * 120.00372 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47212 * 180.02562 * 11 10 8 13 13 H 1.08998 * 110.62900 * 308.10950 * 12 11 10 14 14 C 1.55148 * 110.70628 * 71.40057 * 12 11 10 15 15 C 1.54903 * 101.65152 * 154.03671 * 14 12 11 16 16 N 1.47844 * 104.79748 * 322.92814 * 15 14 12 17 17 C 1.46901 * 110.99785 * 146.36514 * 16 15 14 18 18 C 1.50696 * 109.47247 * 69.15991 * 17 16 15 19 19 O 1.21297 * 119.99890 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00065 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99933 * 179.97438 * 20 18 17 22 22 H 1.07999 * 119.99975 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00011 * 179.97438 * 21 20 18 24 24 N 1.31419 * 120.00149 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00230 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47106 * 59.99866 * 25 23 21 27 27 H 1.48504 * 109.47459 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47068 * 300.00176 * 25 23 21 29 29 C 1.47450 * 108.56678 * 24.09865 * 16 15 14 30 30 H 1.08994 * 109.46808 * 89.97475 * 1 2 3 31 31 H 1.08997 * 109.46502 * 209.97695 * 1 2 3 32 32 H 1.09002 * 109.46847 * 329.97450 * 1 2 3 33 33 H 1.07999 * 125.42354 * 179.97438 * 4 3 2 34 34 H 0.97000 * 119.99695 * 0.02562 * 10 8 7 35 35 H 1.09000 * 109.46807 * 300.00224 * 11 10 8 36 36 H 1.08995 * 109.46761 * 60.00073 * 11 10 8 37 37 H 1.09006 * 110.99174 * 272.12776 * 14 12 11 38 38 H 1.09001 * 110.98621 * 35.94136 * 14 12 11 39 39 H 1.09003 * 110.36811 * 204.09916 * 15 14 12 40 40 H 1.08997 * 110.46834 * 81.80670 * 15 14 12 41 41 H 1.09005 * 109.46983 * 189.15838 * 17 16 15 42 42 H 1.09001 * 109.47206 * 309.15493 * 17 16 15 43 43 H 0.96996 * 120.00280 * 359.97438 * 20 18 17 44 44 H 0.96996 * 119.99815 * 179.97438 * 24 23 21 45 45 H 1.08993 * 109.88482 * 239.60653 * 29 16 15 46 46 H 1.09003 * 110.02104 * 118.49095 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5479 0.7073 -0.0006 5 7 3.6122 -0.6362 -0.0004 6 1 4.4190 -1.1748 -0.0010 7 6 2.3125 -1.1041 -0.0060 8 6 1.8822 -2.5072 -0.0144 9 8 0.6963 -2.7800 -0.0195 10 7 2.8005 -3.4937 -0.0164 11 6 2.3710 -4.8943 -0.0242 12 6 3.6006 -5.8048 -0.0244 13 1 4.2865 -5.5237 -0.8235 14 6 4.3124 -5.7655 1.3536 15 6 5.0160 -7.1453 1.3817 16 7 4.0637 -8.0682 0.7282 17 6 4.7736 -9.1118 -0.0233 18 6 5.4664 -10.0411 0.9397 19 8 5.3779 -9.8523 2.1346 20 7 6.1843 -11.0820 0.4734 21 6 6.8150 -11.9271 1.3495 22 1 6.7362 -11.7590 2.4134 23 6 7.5547 -13.0006 0.8687 24 7 7.6501 -13.2055 -0.4259 25 14 8.4134 -14.1525 2.0624 26 1 7.4065 -14.7815 2.9544 27 1 9.1306 -15.2079 1.3028 28 1 9.3865 -13.3834 2.8792 29 6 3.1838 -7.2845 -0.1583 30 1 -0.3633 0.0005 -1.0276 31 1 -0.3632 -0.8902 0.5135 32 1 -0.3633 0.8898 0.5142 33 1 4.3971 1.3745 -0.0011 34 1 3.7458 -3.2763 -0.0120 35 1 1.7707 -5.0952 0.8631 36 1 1.7758 -5.0868 -0.9168 37 1 5.0403 -4.9551 1.3942 38 1 3.5890 -5.6794 2.1644 39 1 5.2007 -7.4561 2.4101 40 1 5.9515 -7.1075 0.8236 41 1 4.0599 -9.6765 -0.6234 42 1 5.5127 -8.6494 -0.6775 43 1 6.2547 -11.2333 -0.4821 44 1 8.1668 -13.9547 -0.7615 45 1 2.1450 -7.4064 0.1484 46 1 3.3065 -7.6124 -1.1906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663644242.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:43 Heat of formation + Delta-G solvation = -39.791224 kcal Electronic energy + Delta-G solvation = -27752.301346 eV Core-core repulsion = 23676.414886 eV Total energy + Delta-G solvation = -4075.886460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.21527 -40.89483 -40.27885 -39.21398 -36.33740 -35.84490 -34.31225 -33.37914 -33.00114 -32.09433 -30.50072 -28.86098 -28.14819 -26.54576 -25.46042 -23.83303 -22.48440 -22.00086 -21.66348 -20.98655 -20.67503 -19.88331 -19.70688 -17.98265 -17.29833 -17.19048 -16.88033 -16.75086 -16.44224 -16.09404 -15.83038 -15.63549 -15.54845 -15.36318 -14.88672 -14.54334 -14.51987 -14.26792 -13.93249 -13.74500 -13.65442 -13.53883 -13.24232 -13.08230 -13.00686 -12.85602 -12.43627 -12.35206 -12.12989 -12.11580 -11.88958 -11.67206 -11.54829 -11.47455 -11.03883 -10.94965 -10.30582 -10.26372 -10.00458 -9.51121 -9.17599 -8.46322 -5.94934 0.23775 1.39258 1.41177 1.51868 1.84591 1.85357 2.06782 2.12608 2.22808 2.28806 2.84529 3.20407 3.38198 3.52820 3.56765 3.61852 3.81553 3.88746 4.11438 4.27685 4.29290 4.32010 4.32214 4.37045 4.49476 4.54815 4.63565 4.69029 4.78195 4.80985 4.84703 4.92820 4.97307 5.02763 5.05306 5.18061 5.23994 5.36720 5.40712 5.54353 5.90054 6.06339 6.16941 6.30188 6.42321 6.61673 6.92107 7.05668 7.13629 7.57467 8.13824 8.70794 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.035156 B = 0.001668 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.255945 B =16780.218458 C =17099.164387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.074 3.926 3 N -0.540 5.540 4 C 0.241 3.759 5 N -0.540 5.540 6 H 0.441 0.559 7 C -0.108 4.108 8 C 0.593 3.407 9 O -0.560 6.560 10 N -0.712 5.712 11 C 0.140 3.860 12 C -0.105 4.105 13 H 0.105 0.895 14 C -0.113 4.113 15 C 0.050 3.950 16 N -0.532 5.532 17 C 0.054 3.946 18 C 0.440 3.560 19 O -0.617 6.617 20 N -0.575 5.575 21 C -0.333 4.333 22 H 0.077 0.923 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.992 3.008 26 H -0.274 1.274 27 H -0.270 1.270 28 H -0.272 1.272 29 C 0.048 3.952 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.262 0.738 34 H 0.409 0.591 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.040 0.960 41 H 0.107 0.893 42 H 0.072 0.928 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.081 0.919 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.060 26.178 -5.438 27.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.060 4.060 3 N -0.260 5.260 4 C -0.044 4.044 5 N -0.146 5.146 6 H 0.283 0.717 7 C -0.224 4.224 8 C 0.381 3.619 9 O -0.438 6.438 10 N -0.363 5.363 11 C 0.016 3.984 12 C -0.124 4.124 13 H 0.123 0.877 14 C -0.151 4.151 15 C -0.077 4.077 16 N -0.257 5.257 17 C -0.077 4.077 18 C 0.227 3.773 19 O -0.503 6.503 20 N -0.213 5.213 21 C -0.463 4.463 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.199 1.199 27 H -0.195 1.195 28 H -0.197 1.197 29 C -0.080 4.080 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.278 0.722 34 H 0.246 0.754 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.125 0.875 42 H 0.090 0.910 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.451 26.423 -4.387 27.550 hybrid contribution 2.109 -1.660 -0.433 2.719 sum -4.341 24.763 -4.820 25.598 Atomic orbital electron populations 1.20242 0.86781 1.03274 1.03056 1.21329 0.97482 0.87535 0.99685 1.70145 1.02172 1.30889 1.22814 1.26079 0.97494 0.82501 0.98277 1.43250 1.07404 1.08981 1.54966 0.71703 1.20699 0.85831 0.94197 1.21700 1.16960 0.85576 0.83257 0.76122 1.90827 1.17665 1.83492 1.51863 1.45693 1.09725 1.05924 1.74969 1.21264 0.96007 0.78540 1.02573 1.22523 0.96796 0.94424 0.98668 0.87718 1.22796 0.99674 0.95782 0.96850 1.22927 0.93783 0.91715 0.99293 1.63128 1.20460 1.12519 1.29556 1.21973 0.98014 0.93915 0.93830 1.20862 0.82774 0.83797 0.89865 1.90483 1.66068 1.75354 1.18417 1.41930 1.45079 1.24848 1.09470 1.19605 1.28284 1.07283 0.91109 0.90460 1.26012 0.97972 0.99012 0.98245 1.69664 1.41848 1.31591 1.13027 0.85006 0.78178 0.77542 0.77708 1.19889 1.19457 1.19703 1.22883 0.97917 0.90860 0.96350 0.90573 0.90570 0.90520 0.72248 0.75439 0.91865 0.90785 0.88303 0.91153 0.92938 0.94132 0.87479 0.91043 0.77045 0.91335 0.90093 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 9.87 71.24 0.70 -0.73 16 2 C 0.07 1.47 7.15 41.97 0.30 1.77 16 3 N -0.54 -9.55 11.20 -187.58 -2.10 -11.65 16 4 C 0.24 1.98 13.01 180.33 2.35 4.32 16 5 N -0.54 -3.86 6.07 -188.04 -1.14 -5.01 16 6 H 0.44 -0.34 8.32 -92.71 -0.77 -1.11 16 7 C -0.11 -1.75 7.08 40.01 0.28 -1.47 16 8 C 0.59 11.11 7.79 86.47 0.67 11.79 16 9 O -0.56 -14.76 14.83 -4.31 -0.06 -14.82 16 10 N -0.71 -8.78 5.47 -467.01 -2.55 -11.33 16 11 C 0.14 2.06 4.97 86.38 0.43 2.49 16 12 C -0.10 -1.50 2.96 -9.61 -0.03 -1.53 16 13 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 14 C -0.11 -2.01 6.44 31.98 0.21 -1.80 16 15 C 0.05 1.44 5.74 86.77 0.50 1.94 16 16 N -0.53 -16.25 4.86 -890.10 -4.33 -20.58 16 17 C 0.05 1.80 5.06 85.56 0.43 2.23 16 18 C 0.44 20.76 7.58 87.66 0.66 21.43 16 19 O -0.62 -34.12 14.61 -3.08 -0.05 -34.17 16 20 N -0.58 -29.33 5.29 -306.99 -1.62 -30.96 16 21 C -0.33 -18.87 9.68 84.04 0.81 -18.06 16 22 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 23 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 24 N -0.92 -49.27 13.05 21.66 0.28 -48.99 16 25 Si 0.99 42.74 29.55 68.60 2.03 44.76 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 28 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 29 C 0.05 0.97 6.45 86.64 0.56 1.53 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.62 6.50 -2.39 -0.02 1.61 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.26 -0.62 8.06 -2.91 -0.02 -0.64 16 34 H 0.41 2.36 7.71 -92.71 -0.72 1.64 16 35 H 0.06 1.16 8.00 -2.39 -0.02 1.14 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 38 H 0.07 1.40 7.94 -2.39 -0.02 1.38 16 39 H 0.05 1.93 7.38 -2.39 -0.02 1.91 16 40 H 0.04 1.15 7.62 -2.39 -0.02 1.13 16 41 H 0.11 3.17 8.03 -2.38 -0.02 3.15 16 42 H 0.07 2.05 7.85 -2.39 -0.02 2.03 16 43 H 0.40 19.07 7.90 -92.71 -0.73 18.34 16 44 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 45 H 0.08 1.68 7.82 -2.39 -0.02 1.66 16 46 H 0.08 1.31 7.56 -2.39 -0.02 1.29 16 Total: -1.00 -81.44 382.38 -2.37 -83.81 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: -1.17 Total: 25.22 kcal Atomic # 6 Polarization: 15.36 SS G_CDS: 8.35 Total: 23.70 kcal Atomic # 7 Polarization: -117.05 SS G_CDS: -11.47 Total: -128.52 kcal Atomic # 8 Polarization: -48.88 SS G_CDS: -0.11 Total: -48.99 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -81.44 -2.37 -83.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663644242.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.020 kcal (2) G-P(sol) polarization free energy of solvation -81.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds