Wall clock time and date at job start Tue Mar 31 2020 18:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.33315 * 126.10654 * 2 1 4 4 C 1.30854 * 109.68484 * 180.27468 * 3 2 1 5 5 N 1.34504 * 109.16254 * 359.76315 * 4 3 2 6 6 H 0.96997 * 126.46900 * 179.97438 * 5 4 3 7 7 C 1.36664 * 126.10579 * 179.87673 * 2 1 3 8 8 C 1.46765 * 126.83999 * 0.02562 * 7 2 1 9 9 O 1.21678 * 120.00473 * 359.70798 * 8 7 2 10 10 N 1.34780 * 119.99523 * 179.71127 * 8 7 2 11 11 C 1.46498 * 119.99879 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46897 * 179.97438 * 11 10 8 13 13 H 1.08997 * 110.90987 * 57.41121 * 12 11 10 14 14 C 1.55135 * 110.99062 * 293.54166 * 12 11 10 15 15 C 1.54322 * 103.02006 * 206.25834 * 14 12 11 16 16 N 1.47439 * 107.23490 * 22.28319 * 15 14 12 17 17 C 1.46901 * 110.99961 * 123.25626 * 16 15 14 18 18 C 1.50701 * 109.46921 * 69.87543 * 17 16 15 19 19 O 1.21294 * 119.99849 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99707 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99704 * 359.97438 * 21 20 18 23 23 C 1.38941 * 119.99927 * 180.02562 * 21 20 18 24 24 N 1.31413 * 120.00506 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 120.00009 * 359.97438 * 23 21 20 26 26 H 1.48494 * 109.47177 * 89.99959 * 25 23 21 27 27 H 1.48505 * 109.47036 * 210.00243 * 25 23 21 28 28 H 1.48499 * 109.46776 * 329.99732 * 25 23 21 29 29 C 1.47853 * 108.56569 * 0.99003 * 16 15 14 30 30 H 1.09000 * 109.46728 * 270.12358 * 1 2 3 31 31 H 1.08993 * 109.47009 * 30.11893 * 1 2 3 32 32 H 1.08996 * 109.47067 * 150.12521 * 1 2 3 33 33 H 1.08002 * 125.42355 * 179.78414 * 4 3 2 34 34 H 0.96997 * 120.00168 * 359.97438 * 10 8 7 35 35 H 1.08994 * 109.47359 * 59.99678 * 11 10 8 36 36 H 1.09000 * 109.47255 * 299.99381 * 11 10 8 37 37 H 1.09003 * 110.71015 * 87.87432 * 14 12 11 38 38 H 1.09004 * 110.70681 * 324.63747 * 14 12 11 39 39 H 1.09003 * 109.88473 * 262.87599 * 15 14 12 40 40 H 1.09003 * 110.01953 * 141.76715 * 15 14 12 41 41 H 1.09002 * 109.47401 * 309.87571 * 17 16 15 42 42 H 1.09001 * 109.46874 * 189.87583 * 17 16 15 43 43 H 0.96995 * 120.00011 * 0.02562 * 20 18 17 44 44 H 0.96993 * 120.00255 * 180.02562 * 24 23 21 45 45 H 1.09002 * 110.36766 * 94.73414 * 29 16 15 46 46 H 1.08997 * 110.37443 * 217.07382 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5478 0.7072 -0.0059 5 7 3.6122 -0.6363 -0.0047 6 1 4.4189 -1.1749 -0.0085 7 6 2.3124 -1.1041 0.0024 8 6 1.8820 -2.5073 0.0049 9 8 0.6962 -2.7799 0.0103 10 7 2.8003 -3.4938 0.0012 11 6 2.3708 -4.8944 0.0031 12 6 3.6004 -5.8049 -0.0025 13 1 4.2432 -5.5957 0.8524 14 6 4.3852 -5.6706 -1.3340 15 6 5.0959 -7.0349 -1.4577 16 7 4.3396 -7.9975 -0.6360 17 6 3.8974 -9.1438 -1.4413 18 6 5.0913 -9.9818 -1.8202 19 8 6.2012 -9.6564 -1.4549 20 7 4.9255 -11.0934 -2.5642 21 6 6.0116 -11.8561 -2.9084 22 1 6.9999 -11.5658 -2.5838 23 6 5.8408 -13.0017 -3.6758 24 7 6.8817 -13.7331 -4.0054 25 14 4.1314 -13.5033 -4.2377 26 1 3.8397 -12.8789 -5.5531 27 1 4.0663 -14.9813 -4.3660 28 1 3.1293 -13.0483 -3.2407 29 6 3.1856 -7.2971 -0.0328 30 1 -0.3633 0.0022 1.0277 31 1 -0.3633 0.8889 -0.5156 32 1 -0.3633 -0.8911 -0.5119 33 1 4.3971 1.3744 -0.0106 34 1 3.7456 -3.2764 -0.0035 35 1 1.7693 -5.0912 -0.8843 36 1 1.7767 -5.0910 0.8956 37 1 5.1127 -4.8612 -1.2727 38 1 3.7028 -5.5144 -2.1695 39 1 6.1184 -6.9551 -1.0886 40 1 5.1017 -7.3596 -2.4982 41 1 3.4042 -8.7847 -2.3446 42 1 3.1991 -9.7474 -0.8615 43 1 4.0379 -11.3538 -2.8559 44 1 6.7624 -14.5326 -4.5414 45 1 2.2962 -7.4314 -0.6485 46 1 3.0067 -7.6619 0.9786 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663644243.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:47 Heat of formation + Delta-G solvation = -4.581681 kcal Electronic energy + Delta-G solvation = -27841.058685 eV Core-core repulsion = 23766.699026 eV Total energy + Delta-G solvation = -4074.359660 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.69504 -40.02207 -39.22253 -37.86011 -35.48569 -34.00337 -33.69289 -32.26886 -31.68078 -31.40895 -29.62284 -27.99356 -27.19027 -25.33018 -23.94507 -23.28307 -21.70849 -21.08904 -20.86790 -20.09748 -19.34672 -19.14844 -18.21266 -16.85883 -16.61028 -16.25010 -16.09206 -15.81398 -15.24683 -14.98652 -14.90383 -14.83304 -14.36228 -14.07038 -13.74096 -13.56974 -13.34324 -13.14278 -13.11133 -12.98587 -12.49542 -12.48282 -12.32391 -12.29117 -11.79622 -11.42596 -11.29476 -11.17057 -11.06769 -10.89795 -10.77241 -10.61222 -10.50346 -10.28060 -9.99273 -9.61826 -9.57600 -8.94354 -8.60983 -8.19481 -8.04804 -6.32533 -3.84009 0.81702 2.34991 2.37676 2.64748 2.88470 3.01211 3.05037 3.13662 3.72555 3.85256 3.97967 4.08715 4.26596 4.30574 4.45278 4.49411 4.63827 4.76634 4.82123 5.00820 5.16083 5.16918 5.19019 5.22047 5.35872 5.46691 5.48232 5.53288 5.56715 5.58829 5.63257 5.68827 5.73451 5.85976 5.89020 5.97467 6.00905 6.15906 6.30751 6.65691 6.92796 7.07871 7.10091 7.43380 7.57092 7.68712 8.12658 8.58997 8.93886 9.41104 9.82274 10.80624 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028789 B = 0.001776 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.376826 B =15760.853635 C =16183.704514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.100 3.900 3 N -0.500 5.500 4 C 0.223 3.777 5 N -0.556 5.556 6 H 0.423 0.577 7 C -0.097 4.097 8 C 0.595 3.405 9 O -0.521 6.521 10 N -0.727 5.727 11 C 0.132 3.868 12 C -0.111 4.111 13 H 0.092 0.908 14 C -0.140 4.140 15 C 0.056 3.944 16 N -0.505 5.505 17 C 0.037 3.963 18 C 0.452 3.548 19 O -0.559 6.559 20 N -0.593 5.593 21 C -0.304 4.304 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 C 0.052 3.948 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.217 0.783 34 H 0.395 0.605 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.090 0.910 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.049 0.951 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.346 25.879 7.603 28.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.035 4.035 3 N -0.220 5.220 4 C -0.061 4.061 5 N -0.161 5.161 6 H 0.261 0.739 7 C -0.212 4.212 8 C 0.382 3.618 9 O -0.397 6.397 10 N -0.378 5.378 11 C 0.008 3.992 12 C -0.131 4.131 13 H 0.111 0.889 14 C -0.178 4.178 15 C -0.072 4.072 16 N -0.229 5.229 17 C -0.094 4.094 18 C 0.238 3.762 19 O -0.440 6.440 20 N -0.233 5.233 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.077 4.077 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.233 0.767 34 H 0.228 0.772 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.108 0.892 43 H 0.202 0.798 44 H 0.084 0.916 45 H 0.067 0.933 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.348 26.247 8.132 29.362 hybrid contribution -0.343 -1.289 -1.229 1.814 sum -10.692 24.958 6.903 28.016 Atomic orbital electron populations 1.20317 0.86385 1.03787 1.03171 1.21133 0.97019 0.86599 0.98726 1.70171 1.00499 1.30444 1.20905 1.25204 0.97480 0.82019 1.01386 1.43349 1.07972 1.08892 1.55926 0.73856 1.20915 0.84420 0.95044 1.20850 1.16802 0.85865 0.82559 0.76609 1.90840 1.15974 1.82871 1.49989 1.45866 1.09244 1.06659 1.76032 1.21369 0.96341 0.78491 1.02973 1.22562 0.96141 0.95058 0.99299 0.88930 1.22957 0.99303 0.98920 0.96658 1.22730 0.98768 0.88747 0.96933 1.63236 1.19979 1.07141 1.32512 1.22123 0.97046 0.93653 0.96611 1.19643 0.90062 0.83228 0.83288 1.90557 1.25711 1.71413 1.56321 1.42215 1.08989 1.23595 1.48465 1.19415 0.89316 1.04216 1.30333 0.86318 1.25032 0.97604 0.96203 0.97343 1.69617 1.29185 1.16018 1.37385 0.86678 0.83987 0.79287 0.79472 1.19691 1.20156 1.19486 1.23011 0.92863 0.91069 1.00742 0.90622 0.90953 0.89230 0.76672 0.77181 0.90916 0.90688 0.91098 0.91375 0.89790 0.92521 0.93172 0.89226 0.79761 0.91627 0.93253 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 9.88 36.01 0.36 -0.34 16 2 C 0.10 0.99 7.15 -82.51 -0.59 0.40 16 3 N -0.50 -4.69 11.20 -10.64 -0.12 -4.81 16 4 C 0.22 1.23 13.01 -90.57 -1.18 0.05 16 5 N -0.56 -2.72 6.07 -10.79 -0.07 -2.78 16 6 H 0.42 0.60 8.32 -40.82 -0.34 0.26 16 7 C -0.10 -0.83 7.08 -82.15 -0.58 -1.41 16 8 C 0.60 5.68 7.79 -12.81 -0.10 5.58 16 9 O -0.52 -6.60 14.82 5.21 0.08 -6.52 16 10 N -0.73 -5.08 5.40 -61.59 -0.33 -5.41 16 11 C 0.13 1.03 5.12 -4.04 -0.02 1.01 16 12 C -0.11 -0.91 3.10 -88.48 -0.27 -1.19 16 13 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 14 C -0.14 -1.27 6.12 -24.91 -0.15 -1.43 16 15 C 0.06 0.78 5.65 -2.84 -0.02 0.76 16 16 N -0.50 -7.49 4.85 -232.68 -1.13 -8.62 16 17 C 0.04 0.61 5.03 -4.97 -0.03 0.58 16 18 C 0.45 10.10 7.43 -10.98 -0.08 10.01 16 19 O -0.56 -14.70 15.12 5.55 0.08 -14.61 16 20 N -0.59 -13.97 5.09 -10.96 -0.06 -14.02 16 21 C -0.30 -8.53 10.16 -14.94 -0.15 -8.69 16 22 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.63 13.96 55.50 0.77 -24.86 16 25 Si 0.88 19.24 27.74 -169.99 -4.71 14.53 16 26 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 28 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 29 C 0.05 0.54 6.15 -2.29 -0.01 0.53 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.87 6.48 -51.93 -0.34 0.53 16 33 H 0.22 0.22 8.06 -52.49 -0.42 -0.21 16 34 H 0.39 1.76 7.58 -40.82 -0.31 1.45 16 35 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.62 8.01 -51.93 -0.42 0.21 16 39 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.06 0.88 7.31 -51.93 -0.38 0.50 16 41 H 0.05 0.71 7.96 -51.93 -0.41 0.30 16 42 H 0.09 1.28 8.07 -51.93 -0.42 0.86 16 43 H 0.37 7.65 5.76 -40.82 -0.24 7.41 16 44 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.05 0.48 7.70 -51.93 -0.40 0.08 16 46 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -37.06 380.19 -9.28 -46.35 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.61 Total: 8.16 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -2.92 Total: 6.88 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -0.93 Total: -60.51 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: 0.16 Total: -21.14 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.06 -9.28 -46.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663644243.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.767 kcal (2) G-P(sol) polarization free energy of solvation -37.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds