Wall clock time and date at job start Tue Mar 31 2020 18:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.33315 * 126.10654 * 2 1 4 4 C 1.30854 * 109.68484 * 180.27468 * 3 2 1 5 5 N 1.34504 * 109.16254 * 359.76315 * 4 3 2 6 6 H 0.96997 * 126.46900 * 179.97438 * 5 4 3 7 7 C 1.36664 * 126.10579 * 179.87673 * 2 1 3 8 8 C 1.46765 * 126.83999 * 0.02562 * 7 2 1 9 9 O 1.21678 * 120.00473 * 359.70798 * 8 7 2 10 10 N 1.34780 * 119.99523 * 179.71127 * 8 7 2 11 11 C 1.46498 * 119.99879 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46897 * 179.97438 * 11 10 8 13 13 H 1.08997 * 110.90987 * 57.41121 * 12 11 10 14 14 C 1.55135 * 110.99062 * 293.54166 * 12 11 10 15 15 C 1.54322 * 103.02006 * 206.25834 * 14 12 11 16 16 N 1.47439 * 107.23490 * 22.28319 * 15 14 12 17 17 C 1.46901 * 110.99961 * 123.25626 * 16 15 14 18 18 C 1.50701 * 109.46921 * 69.87543 * 17 16 15 19 19 O 1.21294 * 119.99849 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99795 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99707 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99704 * 359.97438 * 21 20 18 23 23 C 1.38941 * 119.99927 * 180.02562 * 21 20 18 24 24 N 1.31413 * 120.00506 * 180.02562 * 23 21 20 25 25 Si 1.86804 * 120.00009 * 359.97438 * 23 21 20 26 26 H 1.48494 * 109.47177 * 89.99959 * 25 23 21 27 27 H 1.48505 * 109.47036 * 210.00243 * 25 23 21 28 28 H 1.48499 * 109.46776 * 329.99732 * 25 23 21 29 29 C 1.47853 * 108.56569 * 0.99003 * 16 15 14 30 30 H 1.09000 * 109.46728 * 270.12358 * 1 2 3 31 31 H 1.08993 * 109.47009 * 30.11893 * 1 2 3 32 32 H 1.08996 * 109.47067 * 150.12521 * 1 2 3 33 33 H 1.08002 * 125.42355 * 179.78414 * 4 3 2 34 34 H 0.96997 * 120.00168 * 359.97438 * 10 8 7 35 35 H 1.08994 * 109.47359 * 59.99678 * 11 10 8 36 36 H 1.09000 * 109.47255 * 299.99381 * 11 10 8 37 37 H 1.09003 * 110.71015 * 87.87432 * 14 12 11 38 38 H 1.09004 * 110.70681 * 324.63747 * 14 12 11 39 39 H 1.09003 * 109.88473 * 262.87599 * 15 14 12 40 40 H 1.09003 * 110.01953 * 141.76715 * 15 14 12 41 41 H 1.09002 * 109.47401 * 309.87571 * 17 16 15 42 42 H 1.09001 * 109.46874 * 189.87583 * 17 16 15 43 43 H 0.96995 * 120.00011 * 0.02562 * 20 18 17 44 44 H 0.96993 * 120.00255 * 180.02562 * 24 23 21 45 45 H 1.09002 * 110.36766 * 94.73414 * 29 16 15 46 46 H 1.08997 * 110.37443 * 217.07382 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5478 0.7072 -0.0059 5 7 3.6122 -0.6363 -0.0047 6 1 4.4189 -1.1749 -0.0085 7 6 2.3124 -1.1041 0.0024 8 6 1.8820 -2.5073 0.0049 9 8 0.6962 -2.7799 0.0103 10 7 2.8003 -3.4938 0.0012 11 6 2.3708 -4.8944 0.0031 12 6 3.6004 -5.8049 -0.0025 13 1 4.2432 -5.5957 0.8524 14 6 4.3852 -5.6706 -1.3340 15 6 5.0959 -7.0349 -1.4577 16 7 4.3396 -7.9975 -0.6360 17 6 3.8974 -9.1438 -1.4413 18 6 5.0913 -9.9818 -1.8202 19 8 6.2012 -9.6564 -1.4549 20 7 4.9255 -11.0934 -2.5642 21 6 6.0116 -11.8561 -2.9084 22 1 6.9999 -11.5658 -2.5838 23 6 5.8408 -13.0017 -3.6758 24 7 6.8817 -13.7331 -4.0054 25 14 4.1314 -13.5033 -4.2377 26 1 3.8397 -12.8789 -5.5531 27 1 4.0663 -14.9813 -4.3660 28 1 3.1293 -13.0483 -3.2407 29 6 3.1856 -7.2971 -0.0328 30 1 -0.3633 0.0022 1.0277 31 1 -0.3633 0.8889 -0.5156 32 1 -0.3633 -0.8911 -0.5119 33 1 4.3971 1.3744 -0.0106 34 1 3.7456 -3.2764 -0.0035 35 1 1.7693 -5.0912 -0.8843 36 1 1.7767 -5.0910 0.8956 37 1 5.1127 -4.8612 -1.2727 38 1 3.7028 -5.5144 -2.1695 39 1 6.1184 -6.9551 -1.0886 40 1 5.1017 -7.3596 -2.4982 41 1 3.4042 -8.7847 -2.3446 42 1 3.1991 -9.7474 -0.8615 43 1 4.0379 -11.3538 -2.8559 44 1 6.7624 -14.5326 -4.5414 45 1 2.2962 -7.4314 -0.6485 46 1 3.0067 -7.6619 0.9786 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663644243.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:46 Heat of formation + Delta-G solvation = -35.217561 kcal Electronic energy + Delta-G solvation = -27842.387157 eV Core-core repulsion = 23766.699026 eV Total energy + Delta-G solvation = -4075.688131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.21769 -40.94595 -40.33897 -39.28744 -36.35443 -35.88711 -34.31781 -33.77014 -33.10519 -32.10573 -30.49806 -28.98946 -28.19105 -26.51164 -25.36628 -23.85180 -22.45349 -21.95860 -21.73764 -21.15658 -20.71569 -20.10424 -19.68222 -17.71330 -17.62348 -17.21535 -16.90249 -16.78292 -16.69404 -16.22995 -15.82176 -15.54180 -15.39004 -15.27279 -14.88457 -14.67999 -14.56191 -14.23364 -14.10643 -13.93266 -13.74332 -13.62882 -13.35739 -13.14153 -13.09061 -12.92665 -12.42216 -12.31791 -12.09613 -11.98896 -11.92051 -11.63479 -11.54755 -11.50215 -11.04265 -10.94951 -10.41148 -10.27603 -10.24418 -9.51240 -9.20385 -8.41673 -6.02354 0.23607 1.29556 1.34478 1.43600 1.84351 1.84944 1.96407 2.11841 2.22234 2.22590 2.66387 3.14463 3.21123 3.53836 3.58278 3.67163 3.75353 3.85069 4.11177 4.16048 4.28835 4.29847 4.31081 4.36218 4.45629 4.47348 4.66673 4.71548 4.73538 4.78232 4.81142 4.91589 4.97242 5.02945 5.06354 5.15797 5.25240 5.35871 5.52524 5.54393 5.90011 6.00133 6.11412 6.29400 6.41625 6.59965 6.88433 6.91851 7.04885 7.40028 7.97460 8.75963 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.028789 B = 0.001776 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.376826 B =15760.853635 C =16183.704514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.074 3.926 3 N -0.540 5.540 4 C 0.240 3.760 5 N -0.540 5.540 6 H 0.440 0.560 7 C -0.109 4.109 8 C 0.595 3.405 9 O -0.559 6.559 10 N -0.713 5.713 11 C 0.140 3.860 12 C -0.094 4.094 13 H 0.101 0.899 14 C -0.126 4.126 15 C 0.054 3.946 16 N -0.532 5.532 17 C 0.050 3.950 18 C 0.450 3.550 19 O -0.607 6.607 20 N -0.594 5.594 21 C -0.327 4.327 22 H 0.055 0.945 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.964 3.036 26 H -0.258 1.258 27 H -0.275 1.275 28 H -0.231 1.231 29 C 0.049 3.951 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.261 0.739 34 H 0.409 0.591 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.033 0.967 41 H 0.078 0.922 42 H 0.118 0.882 43 H 0.389 0.611 44 H 0.279 0.721 45 H 0.065 0.935 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.607 27.289 7.783 31.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.061 4.061 3 N -0.260 5.260 4 C -0.044 4.044 5 N -0.146 5.146 6 H 0.283 0.717 7 C -0.225 4.225 8 C 0.382 3.618 9 O -0.437 6.437 10 N -0.364 5.364 11 C 0.016 3.984 12 C -0.113 4.113 13 H 0.119 0.881 14 C -0.165 4.165 15 C -0.074 4.074 16 N -0.257 5.257 17 C -0.081 4.081 18 C 0.238 3.762 19 O -0.490 6.490 20 N -0.236 5.236 21 C -0.456 4.456 22 H 0.073 0.927 23 C -0.214 4.214 24 N -0.576 5.576 25 Si 0.784 3.216 26 H -0.182 1.182 27 H -0.200 1.200 28 H -0.155 1.155 29 C -0.078 4.078 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.277 0.723 34 H 0.245 0.755 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.096 0.904 42 H 0.136 0.864 43 H 0.224 0.776 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.576 27.665 8.331 31.510 hybrid contribution 0.561 -1.649 -1.223 2.128 sum -12.014 26.016 7.108 29.524 Atomic orbital electron populations 1.20246 0.86720 1.03308 1.03065 1.21341 0.97508 0.87518 0.99691 1.70148 1.02158 1.30921 1.22798 1.26071 0.97501 0.82517 0.98324 1.43261 1.07458 1.08984 1.54935 0.71729 1.20717 0.85774 0.94282 1.21693 1.16929 0.85566 0.83200 0.76113 1.90820 1.17572 1.83466 1.51874 1.45698 1.09741 1.05995 1.74973 1.21240 0.95842 0.78524 1.02803 1.22409 0.96126 0.93778 0.99016 0.88124 1.22872 0.99546 0.96663 0.97387 1.22641 0.98180 0.91395 0.95180 1.63133 1.22224 1.07638 1.32660 1.22019 0.93953 0.93617 0.98554 1.20943 0.91473 0.82646 0.81123 1.90535 1.28534 1.72401 1.57568 1.42053 1.08550 1.23807 1.49216 1.18986 0.88553 1.06042 1.32007 0.92703 1.26101 1.03478 0.95286 0.96546 1.69801 1.32672 1.16785 1.38305 0.85378 0.77447 0.78713 0.80074 1.18207 1.20044 1.15476 1.23110 0.91829 0.91904 1.00957 0.90585 0.90557 0.90453 0.72328 0.75493 0.91427 0.90666 0.88756 0.90714 0.92580 0.94833 0.90390 0.86415 0.77590 0.91184 0.91663 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 9.88 71.24 0.70 -0.67 16 2 C 0.07 1.42 7.15 41.97 0.30 1.72 16 3 N -0.54 -9.36 11.20 -187.58 -2.10 -11.46 16 4 C 0.24 1.93 13.01 180.33 2.35 4.28 16 5 N -0.54 -3.73 6.07 -188.04 -1.14 -4.87 16 6 H 0.44 -0.35 8.32 -92.71 -0.77 -1.12 16 7 C -0.11 -1.69 7.08 40.01 0.28 -1.40 16 8 C 0.59 10.45 7.79 86.47 0.67 11.12 16 9 O -0.56 -13.84 14.82 -4.28 -0.06 -13.91 16 10 N -0.71 -8.03 5.40 -467.01 -2.52 -10.55 16 11 C 0.14 1.77 5.12 86.38 0.44 2.21 16 12 C -0.09 -1.25 3.10 -9.41 -0.03 -1.28 16 13 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 14 C -0.13 -1.96 6.12 31.77 0.19 -1.77 16 15 C 0.05 1.46 5.65 86.65 0.49 1.95 16 16 N -0.53 -14.90 4.85 -890.06 -4.32 -19.22 16 17 C 0.05 1.50 5.03 85.56 0.43 1.93 16 18 C 0.45 20.21 7.43 87.66 0.65 20.86 16 19 O -0.61 -33.35 15.12 -3.07 -0.05 -33.40 16 20 N -0.59 -27.93 5.09 -306.98 -1.56 -29.50 16 21 C -0.33 -19.12 10.16 84.04 0.85 -18.26 16 22 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 23 C -0.02 -0.87 5.50 84.92 0.47 -0.40 16 24 N -0.93 -56.33 13.96 21.66 0.30 -56.03 16 25 Si 0.96 38.67 27.74 68.60 1.90 40.58 16 26 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 27 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 28 H -0.23 -7.81 6.52 99.48 0.65 -7.16 16 29 C 0.05 0.89 6.15 86.77 0.53 1.42 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.56 6.48 -2.39 -0.02 1.55 16 33 H 0.26 -0.62 8.06 -2.91 -0.02 -0.64 16 34 H 0.41 2.21 7.58 -92.71 -0.70 1.51 16 35 H 0.07 0.99 8.11 -2.39 -0.02 0.97 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.12 8.01 -2.39 -0.02 1.10 16 39 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.03 1.04 7.31 -2.39 -0.02 1.02 16 41 H 0.08 1.95 7.96 -2.39 -0.02 1.93 16 42 H 0.12 2.91 8.07 -2.39 -0.02 2.90 16 43 H 0.39 15.11 5.76 -92.71 -0.53 14.58 16 44 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 45 H 0.07 1.00 7.70 -2.39 -0.02 0.98 16 46 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -88.76 380.19 -2.24 -91.00 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: -1.03 Total: 25.65 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 8.34 Total: 21.70 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -11.35 Total: -131.62 kcal Atomic # 8 Polarization: -47.20 SS G_CDS: -0.11 Total: -47.31 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 1.90 Total: 40.58 kcal Total: -88.76 -2.24 -91.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663644243.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.784 kcal (2) G-P(sol) polarization free energy of solvation -88.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds