Wall clock time and date at job start Tue Mar 31 2020 18:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38566 * 119.96592 * 2 1 4 4 C 1.38822 * 118.07108 * 179.97438 * 3 2 1 5 5 C 1.39722 * 117.89946 * 359.97438 * 4 3 2 6 6 C 1.48154 * 120.18595 * 180.02562 * 5 4 3 7 7 O 1.21508 * 120.00107 * 6.38398 * 6 5 4 8 8 N 1.34775 * 119.99871 * 186.38017 * 6 5 4 9 9 C 1.46497 * 120.00274 * 5.58070 * 8 6 5 10 10 C 1.46504 * 119.99956 * 185.57289 * 8 6 5 11 11 H 1.08997 * 109.46677 * 0.02562 * 10 8 6 12 12 C 1.52995 * 109.47241 * 240.00398 * 10 8 6 13 13 C 1.53002 * 109.46865 * 120.00192 * 10 8 6 14 14 N 1.46900 * 109.47403 * 305.00541 * 13 10 8 15 15 C 1.46899 * 111.00000 * 179.97438 * 14 13 10 16 16 C 1.50705 * 109.47005 * 179.97438 * 15 14 13 17 17 O 1.21295 * 120.00017 * 0.02562 * 16 15 14 18 18 N 1.34771 * 119.99806 * 180.02562 * 16 15 14 19 19 C 1.37096 * 119.99841 * 180.02562 * 18 16 15 20 20 H 1.08007 * 120.00291 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00095 * 179.97438 * 19 18 16 22 22 N 1.31416 * 120.00071 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00175 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47098 * 59.99618 * 23 21 19 25 25 H 1.48500 * 109.47109 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46802 * 299.99746 * 23 21 19 27 27 N 1.32785 * 119.63122 * 0.27257 * 5 4 3 28 28 N 1.28357 * 122.02795 * 359.42458 * 27 5 4 29 29 H 1.08996 * 109.47167 * 90.00546 * 1 2 3 30 30 H 1.09005 * 109.46720 * 209.99945 * 1 2 3 31 31 H 1.09000 * 109.47229 * 330.00109 * 1 2 3 32 32 H 1.08001 * 120.96612 * 359.97438 * 3 2 1 33 33 H 1.07999 * 121.05667 * 180.02562 * 4 3 2 34 34 H 1.09002 * 109.47307 * 275.40066 * 9 8 6 35 35 H 1.09004 * 109.46939 * 35.39959 * 9 8 6 36 36 H 1.08997 * 109.47323 * 155.39789 * 9 8 6 37 37 H 1.09003 * 109.46504 * 179.97438 * 12 10 8 38 38 H 1.08997 * 109.47416 * 299.99708 * 12 10 8 39 39 H 1.09001 * 109.47419 * 60.00472 * 12 10 8 40 40 H 1.08999 * 109.47056 * 185.00219 * 13 10 8 41 41 H 1.09001 * 109.46909 * 65.00039 * 13 10 8 42 42 H 1.00900 * 111.00087 * 303.95368 * 14 13 10 43 43 H 1.09001 * 109.47464 * 299.99893 * 15 14 13 44 44 H 1.09000 * 109.47088 * 60.00220 * 15 14 13 45 45 H 0.96994 * 120.00264 * 359.97438 * 18 16 15 46 46 H 0.96998 * 120.00102 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.2004 0.0000 4 6 3.5866 1.1545 0.0005 5 6 4.1992 -0.1012 0.0016 6 6 5.6768 -0.2093 0.0028 7 8 6.3589 0.7895 0.1199 8 7 6.2644 -1.4153 -0.1259 9 6 5.4486 -2.6033 -0.3892 10 6 7.7190 -1.5384 -0.0026 11 1 8.1514 -0.5569 0.1917 12 6 8.2953 -2.1017 -1.3031 13 6 8.0548 -2.4812 1.1547 14 7 7.4012 -2.0040 2.3807 15 6 7.7015 -2.8872 3.5154 16 6 7.0160 -2.3665 4.7524 17 8 6.3432 -1.3589 4.6943 18 7 7.1507 -3.0203 5.9232 19 6 6.5267 -2.5469 7.0484 20 1 5.9276 -1.6497 6.9967 21 6 6.6651 -3.2212 8.2553 22 7 7.3937 -4.3131 8.3182 23 14 5.8143 -2.5765 9.7884 24 1 4.3470 -2.5421 9.5628 25 1 6.1185 -3.4690 10.9357 26 1 6.3017 -1.2056 10.0855 27 7 3.4497 -1.1973 -0.0034 28 7 2.1672 -1.1451 0.0016 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6744 2.1444 -0.0004 33 1 4.1741 2.0608 0.0010 34 1 5.0678 -2.9987 0.5525 35 1 4.6125 -2.3341 -1.0347 36 1 6.0582 -3.3610 -0.8814 37 1 9.3776 -2.1928 -1.2114 38 1 7.8628 -3.0833 -1.4970 39 1 8.0561 -1.4300 -2.1275 40 1 9.1343 -2.5037 1.3035 41 1 7.6993 -3.4847 0.9206 42 1 7.6650 -1.0515 2.5838 43 1 7.3433 -3.8934 3.2974 44 1 8.7785 -2.9128 3.6808 45 1 7.6884 -3.8262 5.9696 46 1 7.4905 -4.7837 9.1609 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753688531.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:15 Heat of formation + Delta-G solvation = 5.016570 kcal Electronic energy + Delta-G solvation = -28901.327629 eV Core-core repulsion = 24827.384181 eV Total energy + Delta-G solvation = -4073.943448 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.40519 -39.70409 -38.22601 -36.85353 -34.85005 -34.18410 -33.68202 -33.22404 -31.61487 -31.13993 -28.61341 -27.56356 -26.89251 -25.25877 -24.90677 -23.77849 -23.10892 -21.77706 -19.76391 -19.09185 -18.23090 -17.83069 -17.22529 -16.56520 -16.11972 -15.84786 -15.78289 -15.18708 -15.00732 -14.61699 -14.46909 -14.26040 -13.90048 -13.81975 -13.54514 -13.49973 -13.28308 -13.08053 -12.81422 -12.71558 -12.56299 -12.40134 -12.26429 -11.92674 -11.66439 -11.45912 -11.40264 -11.25463 -10.99069 -10.84611 -10.43856 -10.41768 -10.18104 -9.98929 -9.86390 -9.78086 -9.46388 -8.60880 -8.37148 -7.99148 -7.91322 -6.38173 -3.78773 0.32325 0.59113 2.59445 2.85855 3.22516 3.27470 3.32333 3.50870 3.69988 3.95898 4.09424 4.15733 4.27851 4.35175 4.43729 4.70707 4.74520 4.84849 5.03645 5.12751 5.15670 5.19607 5.23205 5.26056 5.29945 5.43601 5.48231 5.56772 5.58631 5.61234 5.75488 5.77381 5.83030 5.90176 5.97952 6.02170 6.03257 6.21168 6.31032 6.57152 7.26496 7.33534 7.58288 7.70444 8.05358 8.10115 8.43772 8.65800 9.21784 9.58549 10.10815 10.79691 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009693 B = 0.003128 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.897661 B = 8949.942231 C =11002.178249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.081 3.919 3 C -0.125 4.125 4 C -0.062 4.062 5 C 0.025 3.975 6 C 0.583 3.417 7 O -0.537 6.537 8 N -0.570 5.570 9 C 0.086 3.914 10 C 0.136 3.864 11 H 0.101 0.899 12 C -0.159 4.159 13 C 0.048 3.952 14 N -0.664 5.664 15 C 0.052 3.948 16 C 0.442 3.558 17 O -0.582 6.582 18 N -0.565 5.565 19 C -0.299 4.299 20 H 0.101 0.899 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.274 1.274 27 N -0.194 5.194 28 N -0.247 5.247 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.155 0.845 33 H 0.161 0.839 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.039 0.961 41 H 0.075 0.925 42 H 0.349 0.651 43 H 0.085 0.915 44 H 0.042 0.958 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.625 4.888 -22.151 23.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.062 4.062 3 C -0.154 4.154 4 C -0.091 4.091 5 C -0.121 4.121 6 C 0.368 3.632 7 O -0.414 6.414 8 N -0.300 5.300 9 C -0.056 4.056 10 C 0.033 3.967 11 H 0.119 0.881 12 C -0.217 4.217 13 C -0.082 4.082 14 N -0.296 5.296 15 C -0.080 4.080 16 C 0.227 3.773 17 O -0.465 6.465 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.119 0.881 21 C -0.179 4.179 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 N -0.040 5.040 28 N -0.091 5.091 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.173 0.827 33 H 0.179 0.821 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.057 0.943 41 H 0.094 0.906 42 H 0.169 0.831 43 H 0.103 0.897 44 H 0.060 0.940 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.296 3.997 -22.088 23.313 hybrid contribution 0.916 1.385 1.249 2.078 sum -5.379 5.382 -20.839 22.185 Atomic orbital electron populations 1.20734 0.87228 1.04483 1.03658 1.23067 0.99291 0.90586 0.93208 1.22285 0.94248 1.00115 0.98777 1.22419 0.95057 0.99190 0.92406 1.22782 0.96550 0.91995 1.00748 1.17446 0.85176 0.83636 0.76960 1.90761 1.63529 1.36096 1.50988 1.47394 1.07020 1.07408 1.68149 1.22086 0.94475 0.86513 1.02572 1.21193 0.79806 1.01161 0.94555 0.88096 1.22096 1.01252 1.01594 0.96765 1.22363 0.96437 0.99022 0.90404 1.59998 1.61803 1.06223 1.01586 1.21657 0.97825 0.97599 0.90939 1.19826 0.86345 0.86792 0.84323 1.90533 1.43884 1.26859 1.85261 1.41845 1.45378 1.25756 1.07192 1.19647 1.27137 1.10297 0.85738 0.88091 1.25245 0.97466 0.95877 0.99333 1.69606 1.39708 1.17483 1.27670 0.85928 0.79637 0.78504 0.80208 1.19913 1.20954 1.19947 1.73661 0.99251 1.25280 1.05784 1.73132 1.01460 1.24614 1.09933 0.89654 0.89581 0.90041 0.82694 0.82133 0.91020 0.89828 0.92008 0.91163 0.91870 0.92022 0.94281 0.90609 0.83143 0.89686 0.94002 0.77493 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.67 10.19 36.01 0.37 -0.30 16 2 C 0.08 0.85 6.87 -82.32 -0.57 0.28 16 3 C -0.13 -1.15 9.86 -39.24 -0.39 -1.54 16 4 C -0.06 -0.72 9.73 -38.81 -0.38 -1.10 16 5 C 0.03 0.36 6.64 -82.83 -0.55 -0.19 16 6 C 0.58 9.02 7.65 -12.19 -0.09 8.93 16 7 O -0.54 -9.37 15.75 5.36 0.08 -9.28 16 8 N -0.57 -7.65 2.48 -174.94 -0.43 -8.08 16 9 C 0.09 1.03 8.25 59.85 0.49 1.53 16 10 C 0.14 1.62 2.87 -67.93 -0.20 1.43 16 11 H 0.10 1.36 6.91 -51.93 -0.36 1.00 16 12 C -0.16 -1.36 9.18 37.15 0.34 -1.02 16 13 C 0.05 0.61 4.98 -3.82 -0.02 0.59 16 14 N -0.66 -11.42 5.85 -115.05 -0.67 -12.09 16 15 C 0.05 0.97 6.17 -4.97 -0.03 0.94 16 16 C 0.44 10.90 7.82 -10.99 -0.09 10.82 16 17 O -0.58 -16.62 15.78 5.54 0.09 -16.53 16 18 N -0.56 -14.82 5.29 -10.96 -0.06 -14.87 16 19 C -0.30 -8.60 9.68 -14.93 -0.14 -8.74 16 20 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -25.09 13.05 55.50 0.72 -24.37 16 23 Si 0.93 21.59 29.55 -169.99 -5.02 16.57 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 N -0.19 -2.83 7.40 33.32 0.25 -2.58 16 28 N -0.25 -3.37 11.43 33.63 0.38 -2.98 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.37 8.09 -51.93 -0.42 -0.05 16 32 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.16 1.65 7.73 -52.49 -0.41 1.25 16 34 H 0.07 1.02 8.01 -51.93 -0.42 0.61 16 35 H 0.08 1.00 5.79 -51.93 -0.30 0.70 16 36 H 0.06 0.58 6.44 -51.93 -0.33 0.24 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.49 6.67 -51.93 -0.35 0.14 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.89 7.84 -51.93 -0.41 0.48 16 42 H 0.35 6.59 8.43 -39.29 -0.33 6.26 16 43 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.39 9.79 7.90 -40.82 -0.32 9.47 16 46 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 387.62 15.07 5.84 5.84 Total: -1.00 -35.75 387.62 -6.70 -42.44 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -6.53 Total: 13.82 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: -1.34 Total: 12.12 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: 0.19 Total: -64.98 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: 0.17 Total: -25.82 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.75 -6.70 -42.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753688531.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.460 kcal (2) G-P(sol) polarization free energy of solvation -35.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds