Wall clock time and date at job start Tue Mar 31 2020 18:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38572 * 119.96603 * 2 1 4 4 C 1.38828 * 118.06625 * 179.75058 * 3 2 1 5 5 C 1.39718 * 117.89877 * 0.52524 * 4 3 2 6 6 C 1.48147 * 120.18218 * 179.73692 * 5 4 3 7 7 O 1.21514 * 120.00095 * 352.82489 * 6 5 4 8 8 N 1.34786 * 119.99963 * 172.82702 * 6 5 4 9 9 C 1.46493 * 119.99666 * 1.65507 * 8 6 5 10 10 C 1.46495 * 119.99748 * 181.66310 * 8 6 5 11 11 H 1.09000 * 109.47719 * 359.97438 * 10 8 6 12 12 C 1.53005 * 109.47112 * 119.99855 * 10 8 6 13 13 C 1.52997 * 109.46826 * 239.99293 * 10 8 6 14 14 N 1.46903 * 109.47139 * 55.00352 * 13 10 8 15 15 C 1.46895 * 111.00497 * 179.97438 * 14 13 10 16 16 C 1.50696 * 109.47657 * 179.97438 * 15 14 13 17 17 O 1.21298 * 119.99728 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00134 * 179.97438 * 16 15 14 19 19 C 1.37109 * 119.99711 * 180.02562 * 18 16 15 20 20 H 1.07991 * 120.00054 * 0.02562 * 19 18 16 21 21 C 1.38948 * 119.99547 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00277 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99568 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47397 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47133 * 119.99922 * 23 21 19 26 26 H 1.48505 * 109.46897 * 239.99633 * 23 21 19 27 27 N 1.32786 * 119.63304 * 359.46454 * 5 4 3 28 28 N 1.28350 * 122.02724 * 0.27904 * 27 5 4 29 29 H 1.08999 * 109.46789 * 269.98024 * 1 2 3 30 30 H 1.08998 * 109.46716 * 29.97387 * 1 2 3 31 31 H 1.08997 * 109.47094 * 149.98088 * 1 2 3 32 32 H 1.07994 * 120.96669 * 359.97438 * 3 2 1 33 33 H 1.07998 * 121.04720 * 180.28129 * 4 3 2 34 34 H 1.09004 * 109.47133 * 83.93469 * 9 8 6 35 35 H 1.09000 * 109.47740 * 323.93410 * 9 8 6 36 36 H 1.09003 * 109.47368 * 203.92653 * 9 8 6 37 37 H 1.09000 * 109.47084 * 59.99298 * 12 10 8 38 38 H 1.08995 * 109.47212 * 179.97438 * 12 10 8 39 39 H 1.09001 * 109.47149 * 299.99880 * 12 10 8 40 40 H 1.08999 * 109.47155 * 175.00258 * 13 10 8 41 41 H 1.09000 * 109.47728 * 295.00750 * 13 10 8 42 42 H 1.00906 * 110.99548 * 56.04316 * 14 13 10 43 43 H 1.09003 * 109.47022 * 300.00428 * 15 14 13 44 44 H 1.09000 * 109.46699 * 59.99767 * 15 14 13 45 45 H 0.96996 * 120.00520 * 0.02562 * 18 16 15 46 46 H 0.97002 * 120.00135 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.2005 0.0000 4 6 3.5867 1.1545 0.0053 5 6 4.1992 -0.1013 -0.0009 6 6 5.6767 -0.2093 -0.0016 7 8 6.3588 0.7883 -0.1281 8 7 6.2644 -1.4142 0.1382 9 6 5.4422 -2.6211 0.2542 10 6 7.7253 -1.5168 0.1741 11 1 8.1620 -0.5232 0.0742 12 6 8.1606 -2.1342 1.5047 13 6 8.2029 -2.4017 -0.9790 14 7 7.6838 -1.8746 -2.2482 15 6 8.1236 -2.7005 -3.3805 16 6 7.5725 -2.1306 -4.6621 17 8 6.8816 -1.1339 -4.6348 18 7 7.8481 -2.7276 -5.8385 19 6 7.3470 -2.2087 -7.0045 20 1 6.7319 -1.3214 -6.9803 21 6 7.6307 -2.8245 -8.2173 22 7 8.3796 -3.9039 -8.2469 23 14 6.9486 -2.1171 -9.8060 24 1 6.1422 -0.9075 -9.5032 25 1 8.0710 -1.7516 -10.7072 26 1 6.0900 -3.1303 -10.4705 27 7 3.4497 -1.1974 -0.0009 28 7 2.1672 -1.1450 -0.0005 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6745 2.1444 -0.0004 33 1 4.1740 2.0607 0.0101 34 1 5.1656 -2.9694 -0.7409 35 1 4.5407 -2.3934 0.8230 36 1 6.0085 -3.3987 0.7668 37 1 7.7239 -3.1279 1.6043 38 1 9.2475 -2.2109 1.5313 39 1 7.8203 -1.5038 2.3263 40 1 9.2926 -2.4065 -1.0061 41 1 7.8386 -3.4184 -0.8319 42 1 7.9544 -0.9111 -2.3771 43 1 9.2128 -2.7070 -3.4241 44 1 7.7592 -3.7194 -3.2501 45 1 8.4008 -3.5243 -5.8604 46 1 8.5773 -4.3340 -9.0935 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753688532.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:18 Heat of formation + Delta-G solvation = 6.931100 kcal Electronic energy + Delta-G solvation = -28829.684952 eV Core-core repulsion = 24755.824524 eV Total energy + Delta-G solvation = -4073.860428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.44583 -39.70277 -38.22163 -36.84481 -34.87488 -34.20332 -33.68045 -33.25256 -31.61528 -31.13656 -28.64377 -27.55963 -26.89701 -25.27743 -24.90939 -23.80390 -23.10804 -21.79151 -19.76619 -19.09263 -18.25808 -17.82808 -17.22861 -16.55941 -16.18022 -15.85397 -15.80302 -15.18075 -15.00837 -14.62635 -14.48007 -14.26621 -13.89473 -13.82702 -13.55233 -13.54246 -13.28899 -13.08340 -12.83211 -12.73620 -12.57335 -12.47641 -12.26326 -11.92568 -11.66673 -11.45453 -11.40553 -11.18386 -11.02662 -10.84137 -10.47067 -10.31815 -10.19075 -9.99516 -9.89519 -9.75108 -9.48104 -8.59644 -8.36470 -7.98407 -7.90964 -6.38190 -3.78658 0.29146 0.55177 2.59620 2.84176 3.18709 3.28732 3.36545 3.48873 3.66570 3.96128 4.08508 4.13619 4.25660 4.34005 4.41912 4.67182 4.71254 4.85000 5.04167 5.12889 5.13062 5.16630 5.23555 5.27089 5.30203 5.40812 5.48506 5.53545 5.58372 5.61872 5.72573 5.80300 5.83061 5.89580 5.98749 6.02021 6.03329 6.23359 6.31377 6.58814 7.27481 7.34153 7.58912 7.71990 8.06023 8.10883 8.39574 8.65952 9.22189 9.58867 10.11008 10.79839 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010103 B = 0.002987 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.703799 B = 9371.776289 C =11298.961999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.081 3.919 3 C -0.124 4.124 4 C -0.062 4.062 5 C 0.027 3.973 6 C 0.581 3.419 7 O -0.535 6.535 8 N -0.568 5.568 9 C 0.076 3.924 10 C 0.136 3.864 11 H 0.101 0.899 12 C -0.159 4.159 13 C 0.049 3.951 14 N -0.663 5.663 15 C 0.052 3.948 16 C 0.442 3.558 17 O -0.581 6.581 18 N -0.566 5.566 19 C -0.297 4.297 20 H 0.102 0.898 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 N -0.196 5.196 28 N -0.248 5.248 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.156 0.844 33 H 0.162 0.838 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.039 0.961 41 H 0.075 0.925 42 H 0.350 0.650 43 H 0.042 0.958 44 H 0.085 0.915 45 H 0.392 0.608 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.199 4.016 22.444 24.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.062 4.062 3 C -0.153 4.153 4 C -0.091 4.091 5 C -0.119 4.119 6 C 0.366 3.634 7 O -0.412 6.412 8 N -0.298 5.298 9 C -0.067 4.067 10 C 0.032 3.968 11 H 0.119 0.881 12 C -0.217 4.217 13 C -0.082 4.082 14 N -0.296 5.296 15 C -0.081 4.081 16 C 0.228 3.772 17 O -0.464 6.464 18 N -0.203 5.203 19 C -0.426 4.426 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.756 3.244 24 H -0.193 1.193 25 H -0.208 1.208 26 H -0.207 1.207 27 N -0.042 5.042 28 N -0.093 5.093 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.173 0.827 33 H 0.179 0.821 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.093 0.907 42 H 0.170 0.830 43 H 0.060 0.940 44 H 0.103 0.897 45 H 0.225 0.775 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.875 3.129 22.274 24.181 hybrid contribution 1.081 1.404 -1.150 2.113 sum -7.794 4.533 21.124 22.968 Atomic orbital electron populations 1.20735 0.87216 1.04466 1.03687 1.23060 0.99281 0.90571 0.93275 1.22300 0.94246 1.00135 0.98624 1.22425 0.95053 0.99196 0.92380 1.22819 0.96573 0.92014 1.00506 1.17447 0.85137 0.83702 0.77156 1.90770 1.63448 1.36275 1.50674 1.47403 1.06380 1.06698 1.69353 1.22310 0.95195 0.85852 1.03345 1.21195 0.79794 1.01403 0.94408 0.88079 1.22101 1.01823 1.01423 0.96370 1.22354 0.96961 0.99068 0.89807 1.60010 1.63310 1.06557 0.99721 1.21658 0.97433 0.98067 0.90904 1.19831 0.85950 0.86921 0.84548 1.90538 1.41942 1.27323 1.86640 1.41866 1.46264 1.27063 1.05086 1.19747 1.28759 1.11059 0.83077 0.87974 1.25248 0.97127 0.96088 0.99543 1.69622 1.37839 1.19544 1.27459 0.85812 0.78558 0.78964 0.81087 1.19260 1.20775 1.20742 1.73653 0.99213 1.25051 1.06262 1.73124 1.01552 1.24690 1.09889 0.89639 0.90034 0.89596 0.82655 0.82069 0.91362 0.88466 0.92055 0.91852 0.91141 0.92062 0.94326 0.90653 0.83042 0.93999 0.89720 0.77503 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.62 10.19 36.01 0.37 -0.25 16 2 C 0.08 0.81 6.87 -82.32 -0.57 0.24 16 3 C -0.12 -1.10 9.86 -39.24 -0.39 -1.48 16 4 C -0.06 -0.70 9.73 -38.81 -0.38 -1.08 16 5 C 0.03 0.37 6.70 -82.83 -0.55 -0.18 16 6 C 0.58 8.97 7.66 -12.19 -0.09 8.87 16 7 O -0.54 -9.40 15.75 5.35 0.08 -9.32 16 8 N -0.57 -7.64 2.48 -174.94 -0.43 -8.07 16 9 C 0.08 0.91 8.44 59.84 0.50 1.42 16 10 C 0.14 1.62 2.87 -67.93 -0.20 1.42 16 11 H 0.10 1.36 6.90 -51.93 -0.36 1.00 16 12 C -0.16 -1.36 9.18 37.16 0.34 -1.02 16 13 C 0.05 0.62 4.98 -3.82 -0.02 0.60 16 14 N -0.66 -11.50 5.85 -115.06 -0.67 -12.17 16 15 C 0.05 0.96 6.17 -4.98 -0.03 0.93 16 16 C 0.44 10.94 7.82 -10.99 -0.09 10.85 16 17 O -0.58 -16.65 15.78 5.54 0.09 -16.56 16 18 N -0.57 -14.86 5.29 -10.96 -0.06 -14.92 16 19 C -0.30 -8.55 9.68 -14.93 -0.14 -8.70 16 20 H 0.10 3.11 7.16 -52.49 -0.38 2.73 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -25.12 13.05 55.50 0.72 -24.40 16 23 Si 0.93 21.61 29.55 -169.99 -5.02 16.58 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 27 N -0.20 -2.77 7.27 33.32 0.24 -2.53 16 28 N -0.25 -3.25 11.43 33.63 0.38 -2.87 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.16 1.63 7.74 -52.49 -0.41 1.22 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.10 1.17 5.28 -51.97 -0.27 0.90 16 36 H 0.06 0.58 6.44 -51.93 -0.33 0.25 16 37 H 0.06 0.49 6.67 -51.93 -0.35 0.14 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.89 7.84 -51.93 -0.41 0.48 16 42 H 0.35 6.67 8.43 -39.29 -0.33 6.34 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 45 H 0.39 9.80 7.90 -40.82 -0.32 9.48 16 46 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 387.36 15.07 5.84 5.84 Total: -1.00 -35.83 387.36 -6.68 -42.51 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -6.52 Total: 13.80 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: -1.34 Total: 12.11 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: 0.19 Total: -64.96 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: 0.17 Total: -25.88 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.83 -6.68 -42.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753688532.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.441 kcal (2) G-P(sol) polarization free energy of solvation -35.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds