Wall clock time and date at job start Tue Mar 31 2020 19:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.46987 * 2 1 4 4 C 1.52997 * 109.47288 * 120.00184 * 2 1 3 5 5 H 1.09001 * 109.56690 * 299.76382 * 4 2 1 6 6 C 1.50439 * 109.57024 * 59.99837 * 4 2 1 7 7 O 1.21286 * 118.48872 * 287.25807 * 6 4 2 8 8 N 1.33379 * 123.02404 * 107.23357 * 6 4 2 9 9 C 1.45649 * 124.58615 * 4.31857 * 8 6 4 10 10 C 1.52990 * 110.77521 * 338.10232 * 9 8 6 11 11 N 1.47050 * 109.66862 * 179.46627 * 4 2 1 12 12 C 1.34776 * 121.35311 * 102.87371 * 11 4 2 13 13 O 1.21597 * 119.99953 * 174.85524 * 12 11 4 14 14 N 1.34776 * 119.99976 * 354.86515 * 12 11 4 15 15 C 1.40196 * 119.99708 * 185.13554 * 14 12 11 16 16 C 1.40400 * 125.97330 * 359.70876 * 15 14 12 17 17 C 1.35246 * 107.86778 * 179.83580 * 16 15 14 18 18 N 1.34968 * 107.85809 * 0.42418 * 17 16 15 19 19 C 1.46495 * 125.97676 * 179.70892 * 18 17 16 20 20 C 1.50706 * 109.47012 * 125.00148 * 19 18 17 21 21 H 1.07996 * 119.99774 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99954 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99799 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99899 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47124 * 90.00057 * 24 22 20 26 26 H 1.48501 * 109.47132 * 209.99924 * 24 22 20 27 27 H 1.48500 * 109.47344 * 330.00065 * 24 22 20 28 28 N 1.31210 * 125.97127 * 180.02562 * 15 14 12 29 29 H 1.09005 * 109.47395 * 299.99784 * 1 2 3 30 30 H 1.08993 * 109.47504 * 60.00210 * 1 2 3 31 31 H 1.09005 * 109.46997 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46970 * 240.00097 * 2 1 3 33 33 H 1.08999 * 109.47186 * 60.00230 * 3 2 1 34 34 H 1.09004 * 109.47143 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47293 * 300.00419 * 3 2 1 36 36 H 0.97004 * 117.70901 * 184.34933 * 8 6 4 37 37 H 1.09006 * 109.21587 * 217.76817 * 9 8 6 38 38 H 1.09001 * 109.18291 * 98.41683 * 9 8 6 39 39 H 1.09002 * 109.71878 * 166.39881 * 10 9 8 40 40 H 1.08993 * 109.71879 * 287.05053 * 10 9 8 41 41 H 0.97001 * 120.00415 * 5.12492 * 14 12 11 42 42 H 1.07998 * 126.06781 * 0.02562 * 16 15 14 43 43 H 1.07998 * 126.07103 * 180.18204 * 17 16 15 44 44 H 1.09000 * 109.47558 * 244.99739 * 19 18 17 45 45 H 1.09002 * 109.47367 * 5.00776 * 19 18 17 46 46 H 0.97006 * 119.99996 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6810 -0.2062 2.1402 6 6 1.5398 -2.1400 1.2514 7 8 0.3670 -2.3396 1.4874 8 7 2.3265 -3.1886 1.0053 9 6 3.7657 -3.1111 0.7953 10 6 4.1754 -1.7032 0.3589 11 7 3.5105 -0.7350 1.2471 12 6 4.2207 0.1044 2.0266 13 8 5.4319 0.0096 2.0763 14 7 3.5883 1.0486 2.7511 15 6 4.3317 1.9898 3.4772 16 6 5.7323 2.0610 3.5433 17 6 6.0576 3.1046 4.3397 18 7 4.9102 3.6693 4.7712 19 6 4.8029 4.8270 5.6625 20 6 3.9559 5.8879 5.0080 21 1 3.5390 5.7167 4.0266 22 6 3.7125 7.0767 5.6627 23 7 2.9730 8.0023 5.0918 24 14 4.4332 7.3725 7.3605 25 1 5.7694 8.0065 7.2275 26 1 3.5342 8.2695 8.1304 27 1 4.5687 6.0769 8.0734 28 7 3.8400 2.9544 4.2184 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.9110 -4.0641 0.9628 37 1 4.0545 -3.8244 0.0233 38 1 4.2773 -3.3618 1.7246 39 1 5.2569 -1.5935 0.4391 40 1 3.8633 -1.5321 -0.6712 41 1 2.6189 1.0772 2.7701 42 1 6.4268 1.4015 3.0441 43 1 7.0579 3.4263 4.5894 44 1 4.3410 4.5213 6.6012 45 1 5.7975 5.2269 5.8601 46 1 2.8014 8.8386 5.5525 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177105607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:52 Heat of formation + Delta-G solvation = 38.443755 kcal Electronic energy + Delta-G solvation = -29697.103318 eV Core-core repulsion = 25624.609382 eV Total energy + Delta-G solvation = -4072.493937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.58641 -40.55216 -39.40070 -36.91655 -36.34973 -34.80020 -33.55196 -33.19508 -31.29847 -30.04646 -29.37192 -27.83020 -27.17227 -26.72093 -24.46593 -22.71013 -21.74894 -21.48723 -20.43739 -20.02730 -18.88308 -18.49983 -17.51234 -17.08171 -16.94707 -16.48908 -16.25502 -15.69934 -15.47749 -15.08511 -14.86386 -14.70471 -14.45098 -13.98915 -13.62081 -13.35003 -13.13270 -12.97485 -12.87115 -12.72237 -12.53868 -12.34408 -12.26181 -12.14233 -11.92485 -11.83199 -11.33047 -11.20405 -11.10089 -10.79581 -10.68442 -10.50329 -10.12529 -10.01357 -9.78600 -9.53302 -9.52736 -9.03892 -8.76487 -8.20113 -7.51256 -6.23401 -4.25628 2.01255 2.13878 2.51120 2.79332 2.95170 3.12483 3.17084 3.22881 3.26617 3.71051 3.89751 3.95600 4.23114 4.25784 4.40248 4.44185 4.65349 4.78321 4.94262 4.95769 5.04392 5.20828 5.22826 5.40475 5.41545 5.50861 5.65380 5.70981 5.73618 5.76924 5.84951 6.10138 6.14750 6.16272 6.26229 6.34411 6.42574 6.53508 6.66997 6.73250 6.81876 7.26485 7.36364 7.65790 7.75673 7.81596 8.33461 8.38632 8.55859 8.86419 9.31645 10.89277 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017844 B = 0.002808 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.803934 B = 9970.773130 C =10819.484926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.095 4.095 3 C -0.149 4.149 4 C 0.131 3.869 5 H 0.116 0.884 6 C 0.521 3.479 7 O -0.536 6.536 8 N -0.716 5.716 9 C 0.094 3.906 10 C 0.114 3.886 11 N -0.628 5.628 12 C 0.726 3.274 13 O -0.559 6.559 14 N -0.641 5.641 15 C 0.277 3.723 16 C -0.282 4.282 17 C 0.052 3.948 18 N -0.319 5.319 19 C 0.232 3.768 20 C -0.534 4.534 21 H 0.086 0.914 22 C 0.076 3.924 23 N -0.888 5.888 24 Si 0.873 3.127 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.264 1.264 28 N -0.297 5.297 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.401 0.599 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.080 0.920 41 H 0.406 0.594 42 H 0.162 0.838 43 H 0.169 0.831 44 H 0.042 0.958 45 H 0.049 0.951 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.856 -22.200 -11.396 25.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.115 4.115 3 C -0.206 4.206 4 C 0.023 3.977 5 H 0.134 0.866 6 C 0.306 3.694 7 O -0.412 6.412 8 N -0.368 5.368 9 C -0.031 4.031 10 C -0.009 4.009 11 N -0.367 5.367 12 C 0.427 3.573 13 O -0.434 6.434 14 N -0.292 5.292 15 C 0.023 3.977 16 C -0.313 4.313 17 C -0.098 4.098 18 N -0.101 5.101 19 C 0.113 3.887 20 C -0.572 4.572 21 H 0.104 0.896 22 C -0.127 4.127 23 N -0.525 5.525 24 Si 0.699 3.301 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.189 1.189 28 N -0.128 5.128 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.236 0.764 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.136 0.864 40 H 0.098 0.902 41 H 0.243 0.757 42 H 0.179 0.821 43 H 0.186 0.814 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.120 -21.262 -10.668 23.815 hybrid contribution 0.409 -0.317 0.581 0.778 sum 1.528 -21.579 -10.087 23.869 Atomic orbital electron populations 1.21961 0.93103 1.03573 1.02501 1.21365 0.97286 0.97016 0.95835 1.21872 1.01572 0.94168 1.03021 1.21576 0.80448 0.93598 1.02054 0.86602 1.20056 0.86113 0.87217 0.75999 1.90790 1.16618 1.85370 1.48463 1.45355 1.08855 1.10218 1.72384 1.21847 0.80368 0.98346 1.02588 1.21856 1.00790 0.85315 0.92958 1.47357 1.04995 1.39262 1.45093 1.15357 0.84866 0.78732 0.78363 1.90873 1.11253 1.73006 1.68286 1.41566 1.09474 1.29555 1.48611 1.18773 0.90583 0.91682 0.96704 1.21492 0.93687 1.05031 1.11099 1.22547 0.92786 0.95537 0.98911 1.48602 1.01679 1.23783 1.36007 1.20046 0.98867 0.81199 0.88575 1.21109 1.31958 0.98260 1.05913 0.89620 1.24830 0.94658 0.95549 0.97705 1.69872 1.37420 1.06910 1.38275 0.86912 0.79636 0.79040 0.84551 1.19718 1.20554 1.18859 1.77402 1.11487 1.07639 1.16265 0.91911 0.92133 0.90954 0.90411 0.91923 0.92209 0.91606 0.76354 0.88998 0.90778 0.86384 0.90178 0.75703 0.82055 0.81407 0.94051 0.93325 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.67 37.16 0.32 -1.08 16 2 C -0.09 -0.83 2.56 -90.62 -0.23 -1.06 16 3 C -0.15 -1.51 8.38 37.15 0.31 -1.19 16 4 C 0.13 1.26 1.93 -68.91 -0.13 1.13 16 5 H 0.12 1.20 6.06 -51.93 -0.31 0.89 16 6 C 0.52 5.16 6.86 -11.73 -0.08 5.08 16 7 O -0.54 -6.93 15.47 5.55 0.09 -6.85 16 8 N -0.72 -4.92 5.42 -61.32 -0.33 -5.26 16 9 C 0.09 0.46 7.34 -4.51 -0.03 0.43 16 10 C 0.11 0.77 6.39 -3.63 -0.02 0.75 16 11 N -0.63 -6.24 2.14 -172.25 -0.37 -6.61 16 12 C 0.73 10.09 7.28 -86.92 -0.63 9.46 16 13 O -0.56 -9.10 12.99 5.28 0.07 -9.03 16 14 N -0.64 -9.87 5.03 -15.51 -0.08 -9.95 16 15 C 0.28 5.40 8.11 -154.36 -1.25 4.15 16 16 C -0.28 -5.32 9.61 -39.83 -0.38 -5.70 16 17 C 0.05 0.97 11.44 -17.24 -0.20 0.77 16 18 N -0.32 -7.12 3.67 -62.56 -0.23 -7.35 16 19 C 0.23 5.45 5.33 -5.19 -0.03 5.42 16 20 C -0.53 -14.96 9.79 -34.44 -0.34 -15.30 16 21 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 22 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 23 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 24 Si 0.87 20.04 27.47 -169.99 -4.67 15.37 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 28 N -0.30 -6.71 12.42 31.44 0.39 -6.32 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.74 5.97 -51.93 -0.31 0.43 16 32 H 0.08 0.60 7.50 -51.93 -0.39 0.21 16 33 H 0.06 0.70 7.71 -51.93 -0.40 0.30 16 34 H 0.06 0.68 6.97 -51.93 -0.36 0.32 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.40 2.23 8.80 -40.82 -0.36 1.88 16 37 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.12 0.86 7.08 -51.93 -0.37 0.49 16 40 H 0.08 0.42 7.51 -51.93 -0.39 0.03 16 41 H 0.41 5.57 5.93 -40.82 -0.24 5.33 16 42 H 0.16 2.94 5.93 -52.49 -0.31 2.63 16 43 H 0.17 2.48 8.06 -52.49 -0.42 2.06 16 44 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 45 H 0.05 1.03 7.50 -51.93 -0.39 0.64 16 46 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 367.74 15.07 5.54 5.54 Total: -1.00 -35.02 367.74 -7.95 -42.97 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.34 Total: 8.30 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -2.79 Total: 4.88 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: 0.16 Total: -61.20 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.15 Total: -15.88 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.67 Total: 15.37 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.02 -7.95 -42.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177105607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.415 kcal (2) G-P(sol) polarization free energy of solvation -35.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds