Wall clock time and date at job start Tue Mar 31 2020 20:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.50584 * 2 1 4 4 C 1.53052 * 109.49158 * 239.94876 * 2 1 3 5 5 N 1.46957 * 109.36800 * 181.62886 * 4 2 1 6 6 C 1.39667 * 111.00037 * 183.18587 * 5 4 2 7 7 C 1.38947 * 120.06197 * 179.97438 * 6 5 4 8 8 C 1.38090 * 119.97936 * 180.02562 * 7 6 5 9 9 C 1.38275 * 120.09570 * 359.97438 * 8 7 6 10 10 C 1.38496 * 120.12428 * 0.02562 * 9 8 7 11 11 F 1.35103 * 119.98819 * 180.02562 * 10 9 8 12 12 C 1.38346 * 120.02409 * 359.76277 * 10 9 8 13 13 C 1.46948 * 110.87760 * 59.31928 * 5 4 2 14 14 C 1.53051 * 109.36666 * 300.67709 * 13 5 4 15 15 N 1.46952 * 109.49383 * 120.05351 * 2 1 3 16 16 C 1.46899 * 110.99951 * 303.16019 * 15 2 1 17 17 C 1.50703 * 109.47107 * 169.99745 * 16 15 2 18 18 O 1.21278 * 119.99985 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00161 * 180.02562 * 17 16 15 20 20 C 1.46496 * 120.00271 * 180.02562 * 19 17 16 21 21 C 1.50701 * 109.47174 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00129 * 359.97438 * 21 20 19 23 23 C 1.37880 * 119.99861 * 180.02562 * 21 20 19 24 24 N 1.31510 * 119.99913 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99734 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47432 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47062 * 119.99742 * 25 23 21 28 28 H 1.48506 * 109.46890 * 239.99790 * 25 23 21 29 29 H 1.08999 * 109.46993 * 299.94367 * 1 2 3 30 30 H 1.09002 * 109.46982 * 59.94671 * 1 2 3 31 31 H 1.09004 * 109.46744 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.48430 * 301.59974 * 4 2 1 33 33 H 1.09007 * 109.48935 * 61.63825 * 4 2 1 34 34 H 1.07999 * 120.01191 * 0.03422 * 7 6 5 35 35 H 1.07997 * 119.95528 * 180.02562 * 8 7 6 36 36 H 1.08005 * 119.93702 * 180.02562 * 9 8 7 37 37 H 1.08002 * 120.04989 * 180.28317 * 12 10 9 38 38 H 1.09000 * 109.49312 * 60.65144 * 13 5 4 39 39 H 1.09006 * 109.48712 * 180.69236 * 13 5 4 40 40 H 1.08994 * 109.49019 * 298.43992 * 14 13 5 41 41 H 1.09002 * 109.49053 * 178.37271 * 14 13 5 42 42 H 1.09002 * 109.47043 * 289.99725 * 16 15 2 43 43 H 1.09001 * 109.47354 * 49.99787 * 16 15 2 44 44 H 0.97005 * 119.99463 * 359.97438 * 19 17 16 45 45 H 1.09002 * 109.47021 * 299.99722 * 20 19 17 46 46 H 1.09001 * 109.47001 * 59.99554 * 20 19 17 47 47 H 0.97002 * 119.99768 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0407 -0.7225 -1.2489 5 7 3.5097 -0.7551 -1.2265 6 6 4.0150 -1.3445 -2.3876 7 6 5.3875 -1.4715 -2.5631 8 6 5.8852 -2.0540 -3.7120 9 6 5.0196 -2.5119 -4.6883 10 6 3.6508 -2.3873 -4.5176 11 9 2.8076 -2.8361 -5.4730 12 6 3.1466 -1.8085 -3.3666 13 6 4.0000 -1.4489 -0.0275 14 6 3.4894 -0.7264 1.2214 15 7 2.0204 -0.6938 1.1990 16 6 1.4889 -0.0739 2.4202 17 6 1.8069 -0.9475 3.6063 18 8 2.4158 -1.9846 3.4497 19 7 1.4137 -0.5769 4.8410 20 6 1.7233 -1.4258 5.9941 21 6 1.1779 -0.7900 7.2468 22 1 0.6536 0.1524 7.1899 23 6 1.3493 -1.4109 8.4659 24 7 1.9883 -2.5583 8.5353 25 14 0.6740 -0.6224 10.0188 26 1 0.0023 0.6561 9.6730 27 1 -0.3051 -1.5403 10.6545 28 1 1.7884 -0.3559 10.9635 29 1 -0.3633 0.5130 0.8905 30 1 -0.3633 0.5147 -0.8895 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6544 -1.7417 -1.2627 33 1 1.7019 -0.1931 -2.1394 34 1 6.0648 -1.1149 -1.8013 35 1 6.9520 -2.1529 -3.8478 36 1 5.4117 -2.9674 -5.5856 37 1 2.0792 -1.7154 -3.2311 38 1 3.6361 -2.4764 -0.0275 39 1 5.0900 -1.4492 -0.0277 40 1 3.8756 0.2928 1.2352 41 1 3.8279 -1.2560 2.1119 42 1 1.9451 0.9063 2.5583 43 1 0.4084 0.0376 2.3304 44 1 0.9263 0.2524 4.9662 45 1 1.2677 -2.4064 5.8560 46 1 2.8039 -1.5366 6.0840 47 1 2.1085 -2.9953 9.3929 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795190873.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:46 Heat of formation + Delta-G solvation = -33.435037 kcal Electronic energy + Delta-G solvation = -28511.399570 eV Core-core repulsion = 24415.868773 eV Total energy + Delta-G solvation = -4095.530797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.15018 -40.76152 -39.24368 -37.99313 -35.58131 -34.18081 -32.73628 -32.35240 -31.02212 -30.54794 -28.57988 -27.52396 -26.70729 -24.86265 -23.32500 -22.58997 -22.16860 -21.39070 -19.91125 -19.63841 -18.17428 -17.26571 -16.76259 -16.42474 -16.17899 -15.90767 -15.74480 -15.49241 -15.32711 -15.15214 -14.80039 -14.53196 -14.31158 -14.15087 -13.99520 -13.62088 -13.38454 -12.96298 -12.69255 -12.47360 -12.33673 -12.12006 -12.07783 -12.00942 -11.90106 -11.66751 -11.42903 -11.20244 -11.03031 -10.96988 -10.86353 -10.72642 -10.32934 -10.03568 -9.40024 -9.14160 -9.03804 -8.75807 -8.29900 -8.18355 -7.87990 -6.18982 -4.25829 0.89263 0.92666 3.15364 3.21590 3.28694 3.31536 3.35200 3.48744 3.54800 3.99690 4.20512 4.37868 4.42284 4.52112 4.68301 4.78603 4.80023 4.86753 5.01121 5.09279 5.11888 5.17238 5.21934 5.25669 5.34069 5.37672 5.43180 5.50907 5.55613 5.62864 5.66054 5.75342 5.80310 5.84686 5.87575 6.03789 6.05304 6.09492 6.40383 6.63236 6.84380 6.97788 7.05022 7.30208 7.42909 7.49928 7.65437 7.95007 8.61362 8.76955 9.09931 9.41084 10.91209 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.026495 B = 0.002003 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.540212 B =13977.436790 C =14510.021222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.082 3.918 3 H 0.051 0.949 4 C 0.058 3.942 5 N -0.491 5.491 6 C 0.148 3.852 7 C -0.152 4.152 8 C -0.065 4.065 9 C -0.186 4.186 10 C 0.124 3.876 11 F -0.141 7.141 12 C -0.210 4.210 13 C 0.064 3.936 14 C 0.051 3.949 15 N -0.516 5.516 16 C 0.031 3.969 17 C 0.499 3.501 18 O -0.540 6.540 19 N -0.715 5.715 20 C 0.251 3.749 21 C -0.543 4.543 22 H 0.063 0.937 23 C 0.063 3.937 24 N -0.885 5.885 25 Si 0.904 3.096 26 H -0.272 1.272 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.139 0.861 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.037 0.963 41 H 0.111 0.889 42 H 0.058 0.942 43 H 0.105 0.895 44 H 0.389 0.611 45 H 0.027 0.973 46 H 0.026 0.974 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.206 5.738 -25.085 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 H 0.069 0.931 4 C -0.069 4.069 5 N -0.205 5.205 6 C 0.049 3.951 7 C -0.172 4.172 8 C -0.084 4.084 9 C -0.206 4.206 10 C 0.104 3.896 11 F -0.119 7.119 12 C -0.232 4.232 13 C -0.061 4.061 14 C -0.077 4.077 15 N -0.241 5.241 16 C -0.100 4.100 17 C 0.283 3.717 18 O -0.418 6.418 19 N -0.364 5.364 20 C 0.131 3.869 21 C -0.581 4.581 22 H 0.081 0.919 23 C -0.141 4.141 24 N -0.522 5.522 25 Si 0.731 3.269 26 H -0.196 1.196 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.157 0.843 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.056 0.944 41 H 0.129 0.871 42 H 0.076 0.924 43 H 0.122 0.878 44 H 0.222 0.778 45 H 0.045 0.955 46 H 0.044 0.956 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.647 4.842 -24.967 25.692 hybrid contribution -0.743 0.872 0.776 1.384 sum 2.905 5.715 -24.190 25.025 Atomic orbital electron populations 1.21918 0.93591 1.03166 1.02127 1.21690 0.95613 0.95961 0.89455 0.93138 1.22426 0.85371 1.00963 0.98145 1.59274 1.09920 1.49810 1.01491 1.18753 0.93152 0.91695 0.91472 1.20894 0.93516 1.03450 0.99387 1.20859 0.99774 0.95483 0.92278 1.21047 0.91384 1.06229 1.01949 1.17515 0.87657 0.97778 0.86626 1.91500 1.70992 1.86983 1.62470 1.21264 1.01117 1.05228 0.95555 1.22351 1.00167 0.96662 0.86886 1.22395 0.86864 0.99543 0.98854 1.61817 1.08853 1.53030 1.00413 1.22109 1.02182 0.96013 0.89723 1.20281 0.80422 0.86815 0.84178 1.90620 1.41028 1.24916 1.85239 1.46459 1.56679 1.25808 1.07422 1.19082 0.96700 0.90211 0.80933 1.21266 1.37748 1.07569 0.91548 0.91868 1.24960 0.94982 0.94850 0.99293 1.69983 1.40571 1.15864 1.25819 0.86364 0.78715 0.79252 0.82587 1.19646 1.20788 1.20809 0.91693 0.91912 0.91354 0.92223 0.89612 0.84978 0.84822 0.84998 0.84301 0.92245 0.89463 0.94443 0.87134 0.92356 0.87755 0.77831 0.95545 0.95635 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.89 37.16 0.33 -0.99 16 2 C 0.08 0.85 2.56 -67.66 -0.17 0.68 16 3 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 4 C 0.06 0.58 3.58 -3.77 -0.01 0.57 16 5 N -0.49 -5.25 4.75 -170.96 -0.81 -6.06 16 6 C 0.15 1.52 5.64 -83.80 -0.47 1.05 16 7 C -0.15 -1.36 9.19 -39.37 -0.36 -1.72 16 8 C -0.07 -0.50 10.04 -39.62 -0.40 -0.90 16 9 C -0.19 -1.59 10.02 -39.47 -0.40 -1.98 16 10 C 0.12 1.25 7.30 -39.45 -0.29 0.96 16 11 F -0.14 -1.52 17.27 2.25 0.04 -1.48 16 12 C -0.21 -2.12 8.79 -39.31 -0.35 -2.47 16 13 C 0.06 0.74 5.38 -3.77 -0.02 0.72 16 14 C 0.05 0.69 5.26 -3.77 -0.02 0.67 16 15 N -0.52 -6.90 4.26 -227.93 -0.97 -7.87 16 16 C 0.03 0.42 5.21 -4.98 -0.03 0.39 16 17 C 0.50 9.49 7.53 -10.98 -0.08 9.41 16 18 O -0.54 -12.36 14.34 5.56 0.08 -12.28 16 19 N -0.71 -14.51 5.55 -61.47 -0.34 -14.85 16 20 C 0.25 6.54 5.43 -5.20 -0.03 6.51 16 21 C -0.54 -14.52 9.28 -34.44 -0.32 -14.84 16 22 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 23 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 24 N -0.88 -25.85 13.29 55.43 0.74 -25.12 16 25 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 26 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H 0.06 0.55 6.15 -51.93 -0.32 0.23 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.64 7.57 -51.93 -0.39 0.25 16 33 H 0.09 0.73 7.18 -51.93 -0.37 0.36 16 34 H 0.13 1.03 7.18 -52.49 -0.38 0.66 16 35 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.14 1.28 5.81 -52.49 -0.30 0.98 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.87 6.82 -51.93 -0.35 0.52 16 40 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.11 1.80 5.85 -51.93 -0.30 1.50 16 42 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 43 H 0.10 1.23 5.73 -51.93 -0.30 0.93 16 44 H 0.39 6.72 8.32 -40.82 -0.34 6.38 16 45 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 377.62 15.07 5.69 5.69 Total: -1.00 -31.82 377.62 -10.13 -41.96 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -6.82 Total: 4.71 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -2.71 Total: -0.31 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -1.39 Total: -53.89 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.08 Total: -12.28 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.82 -10.13 -41.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795190873.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.521 kcal (2) G-P(sol) polarization free energy of solvation -31.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds