Wall clock time and date at job start Tue Mar 31 2020 20:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.48788 * 2 1 4 4 C 1.53052 * 109.48941 * 120.06637 * 2 1 3 5 5 N 1.46956 * 109.36418 * 178.36787 * 4 2 1 6 6 C 1.39663 * 111.00031 * 176.81390 * 5 4 2 7 7 C 1.38955 * 120.05906 * 359.80136 * 6 5 4 8 8 C 1.38092 * 119.97242 * 180.02562 * 7 6 5 9 9 C 1.38276 * 120.10280 * 359.97438 * 8 7 6 10 10 C 1.38496 * 120.12130 * 0.02562 * 9 8 7 11 11 F 1.35095 * 119.98979 * 179.97438 * 10 9 8 12 12 C 1.38346 * 120.02326 * 359.97438 * 10 9 8 13 13 C 1.46962 * 110.87943 * 300.67843 * 5 4 2 14 14 C 1.53053 * 109.36163 * 59.32440 * 13 5 4 15 15 N 1.46955 * 109.48890 * 239.95877 * 2 1 3 16 16 C 1.46908 * 110.99771 * 56.84296 * 15 2 1 17 17 C 1.50701 * 109.46598 * 190.04481 * 16 15 2 18 18 O 1.21278 * 120.00532 * 5.81952 * 17 16 15 19 19 N 1.34778 * 119.99736 * 185.81087 * 17 16 15 20 20 C 1.46501 * 120.00247 * 179.97438 * 19 17 16 21 21 C 1.50701 * 109.47133 * 180.02562 * 20 19 17 22 22 H 1.07996 * 119.99861 * 0.02562 * 21 20 19 23 23 C 1.37883 * 119.99530 * 180.02562 * 21 20 19 24 24 N 1.31513 * 119.99399 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 120.00208 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.46955 * 89.99852 * 25 23 21 27 27 H 1.48503 * 109.47043 * 209.99801 * 25 23 21 28 28 H 1.48498 * 109.47230 * 329.99769 * 25 23 21 29 29 H 1.09001 * 109.47531 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47038 * 300.04125 * 1 2 3 31 31 H 1.09002 * 109.47233 * 60.03747 * 1 2 3 32 32 H 1.09008 * 109.48514 * 58.40244 * 4 2 1 33 33 H 1.08999 * 109.48988 * 298.33520 * 4 2 1 34 34 H 1.07997 * 120.01354 * 0.02562 * 7 6 5 35 35 H 1.08006 * 119.94987 * 180.25440 * 8 7 6 36 36 H 1.07997 * 119.94052 * 179.97438 * 9 8 7 37 37 H 1.08000 * 120.04849 * 179.97438 * 12 10 9 38 38 H 1.08993 * 109.48988 * 179.28413 * 13 5 4 39 39 H 1.08999 * 109.49012 * 299.35505 * 13 5 4 40 40 H 1.08998 * 109.49316 * 61.55937 * 14 13 5 41 41 H 1.08999 * 109.48711 * 181.62995 * 14 13 5 42 42 H 1.08995 * 109.47358 * 310.04258 * 16 15 2 43 43 H 1.08993 * 109.46954 * 70.04857 * 16 15 2 44 44 H 0.97006 * 119.99704 * 0.02562 * 19 17 16 45 45 H 1.08994 * 109.47442 * 300.00850 * 20 19 17 46 46 H 1.09006 * 109.46615 * 60.00409 * 20 19 17 47 47 H 0.97005 * 120.00056 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7229 1.2487 5 7 3.5096 -0.7555 1.2263 6 6 4.0149 -1.3452 2.3871 7 6 3.1461 -1.8016 3.3709 8 6 3.6477 -2.3838 4.5182 9 6 5.0136 -2.5140 4.6897 10 6 5.8832 -2.0606 3.7119 11 9 7.2172 -2.1887 3.8824 12 6 5.3863 -1.4764 2.5604 13 6 3.9999 -1.4492 0.0270 14 6 3.4893 -0.7262 -1.2217 15 7 2.0203 -0.6935 -1.1993 16 6 1.4887 -0.0733 -2.4203 17 6 1.8057 -0.9472 -3.6064 18 8 2.3199 -2.0329 -3.4397 19 7 1.5175 -0.5224 -4.8526 20 6 1.8262 -1.3716 -6.0058 21 6 1.4090 -0.6698 -7.2725 22 1 0.9593 0.3109 -7.2234 23 6 1.6013 -1.2799 -8.4939 24 7 1.2377 -0.6672 -9.5993 25 14 2.3784 -2.9764 -8.5786 26 1 1.3159 -4.0115 -8.5083 27 1 3.1225 -3.1168 -9.8560 28 1 3.3144 -3.1496 -7.4388 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5145 0.8897 31 1 -0.3634 0.5133 -0.8903 32 1 1.6544 -1.7421 1.2623 33 1 1.7022 -0.1934 2.1393 34 1 2.0791 -1.7010 3.2382 35 1 2.9719 -2.7422 5.2807 36 1 5.4030 -2.9694 5.5882 37 1 6.0641 -1.1223 1.7978 38 1 5.0898 -1.4491 0.0269 39 1 3.6359 -2.4766 0.0268 40 1 3.8755 0.2930 -1.2353 41 1 3.8277 -1.2557 -2.1123 42 1 0.4083 0.0390 -2.3301 43 1 1.9456 0.9065 -2.5586 44 1 1.1065 0.3461 -4.9860 45 1 2.8978 -1.5683 -6.0358 46 1 1.2861 -2.3144 -5.9175 47 1 1.3727 -1.0964 -10.4587 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795190876.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:50 Heat of formation + Delta-G solvation = -29.785596 kcal Electronic energy + Delta-G solvation = -28559.647192 eV Core-core repulsion = 24464.274647 eV Total energy + Delta-G solvation = -4095.372545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.17175 -40.82438 -39.34639 -38.09260 -35.64033 -34.29329 -32.79426 -32.38788 -31.11781 -30.66716 -28.79020 -27.74491 -26.96415 -24.88940 -23.54480 -22.30492 -21.95788 -21.48341 -20.00366 -19.78198 -18.24282 -17.41645 -16.72034 -16.51708 -16.28662 -16.02045 -15.89476 -15.63142 -15.42307 -15.20068 -14.82991 -14.56940 -14.38362 -14.12114 -14.01146 -13.70163 -13.40934 -13.15624 -12.78148 -12.59086 -12.41926 -12.31952 -12.25414 -12.14556 -11.95888 -11.73847 -11.60064 -11.31261 -11.04355 -11.03275 -10.84922 -10.72656 -10.09143 -9.99321 -9.52168 -9.20404 -9.13609 -8.79954 -8.39526 -8.24256 -8.14480 -6.23790 -4.26153 0.84095 0.89989 3.09812 3.20122 3.25493 3.31594 3.39929 3.40133 3.45075 4.03632 4.14749 4.31417 4.37106 4.46147 4.64946 4.71470 4.73676 4.80608 4.97520 5.01448 5.08127 5.11381 5.14997 5.19898 5.27232 5.31429 5.37611 5.40965 5.47845 5.58616 5.60530 5.67715 5.76641 5.78591 5.83085 5.94236 5.99254 6.02452 6.36133 6.58657 6.71920 6.82740 6.93049 6.97269 7.04893 7.21120 7.37131 8.11966 8.49365 8.73233 8.92639 9.36370 10.88112 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.019259 B = 0.002212 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.505184 B =12657.629293 C =13646.540620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.081 3.919 3 H 0.052 0.948 4 C 0.060 3.940 5 N -0.492 5.492 6 C 0.148 3.852 7 C -0.183 4.183 8 C -0.063 4.063 9 C -0.186 4.186 10 C 0.124 3.876 11 F -0.139 7.139 12 C -0.179 4.179 13 C 0.064 3.936 14 C 0.053 3.947 15 N -0.515 5.515 16 C 0.031 3.969 17 C 0.500 3.500 18 O -0.541 6.541 19 N -0.708 5.708 20 C 0.223 3.777 21 C -0.544 4.544 22 H 0.079 0.921 23 C 0.077 3.923 24 N -0.892 5.892 25 Si 0.878 3.122 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.261 1.261 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.039 0.961 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.060 0.940 44 H 0.395 0.605 45 H 0.024 0.976 46 H 0.020 0.980 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.457 1.245 28.804 28.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 H 0.070 0.930 4 C -0.067 4.067 5 N -0.206 5.206 6 C 0.049 3.951 7 C -0.204 4.204 8 C -0.082 4.082 9 C -0.206 4.206 10 C 0.104 3.896 11 F -0.118 7.118 12 C -0.201 4.201 13 C -0.061 4.061 14 C -0.075 4.075 15 N -0.241 5.241 16 C -0.100 4.100 17 C 0.284 3.716 18 O -0.419 6.419 19 N -0.357 5.357 20 C 0.100 3.900 21 C -0.582 4.582 22 H 0.097 0.903 23 C -0.127 4.127 24 N -0.529 5.529 25 Si 0.704 3.296 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.185 1.185 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.058 0.942 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.078 0.922 44 H 0.229 0.771 45 H 0.042 0.958 46 H 0.038 0.962 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.850 0.465 28.586 28.731 hybrid contribution 0.441 -0.194 -0.300 0.568 sum 3.292 0.271 28.286 28.478 Atomic orbital electron populations 1.21917 0.93504 1.03158 1.02207 1.21701 0.95658 0.96026 0.89372 0.93049 1.22421 0.85157 1.00960 0.98147 1.59193 1.09971 1.49995 1.01468 1.18703 0.92399 0.91866 0.92091 1.21398 1.00175 1.02928 0.95927 1.20847 0.94281 0.96252 0.96805 1.21047 0.93646 1.05860 1.00059 1.17477 0.77215 0.99672 0.95237 1.91505 1.30837 1.93874 1.95581 1.20702 0.94904 1.05737 0.98728 1.22341 1.00158 0.96646 0.86974 1.22333 0.86950 0.99597 0.98624 1.61821 1.08714 1.53092 1.00466 1.22095 1.02420 0.95960 0.89496 1.20345 0.79548 0.87432 0.84234 1.90632 1.43558 1.22097 1.85634 1.46189 1.61648 1.21889 1.05991 1.19464 0.96187 0.90881 0.83433 1.21094 1.42722 1.05414 0.88964 0.90275 1.24807 0.94619 0.97939 0.95319 1.69881 1.46695 1.38411 0.97947 0.86805 0.80336 0.84373 0.78094 1.19849 1.20917 1.18524 0.91353 0.91844 0.91674 0.92167 0.89464 0.84804 0.84983 0.84973 0.84470 0.89574 0.92206 0.94238 0.87717 0.87450 0.92211 0.77120 0.95819 0.96186 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.89 37.16 0.33 -0.86 16 2 C 0.08 0.79 2.56 -67.66 -0.17 0.61 16 3 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 4 C 0.06 0.54 3.58 -3.77 -0.01 0.53 16 5 N -0.49 -5.02 4.75 -170.96 -0.81 -5.84 16 6 C 0.15 1.46 5.64 -83.80 -0.47 0.99 16 7 C -0.18 -1.52 8.82 -39.37 -0.35 -1.86 16 8 C -0.06 -0.46 10.04 -39.62 -0.40 -0.86 16 9 C -0.19 -1.53 10.02 -39.47 -0.40 -1.92 16 10 C 0.12 1.22 7.30 -39.45 -0.29 0.94 16 11 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 12 C -0.18 -1.80 9.17 -39.32 -0.36 -2.16 16 13 C 0.06 0.72 5.38 -3.76 -0.02 0.70 16 14 C 0.05 0.68 5.26 -3.77 -0.02 0.66 16 15 N -0.52 -6.50 4.22 -227.92 -0.96 -7.46 16 16 C 0.03 0.40 5.22 -4.97 -0.03 0.38 16 17 C 0.50 9.02 7.40 -10.98 -0.08 8.94 16 18 O -0.54 -11.72 14.65 5.56 0.08 -11.64 16 19 N -0.71 -13.77 5.55 -61.47 -0.34 -14.11 16 20 C 0.22 5.36 4.50 -5.19 -0.02 5.34 16 21 C -0.54 -14.71 9.83 -34.44 -0.34 -15.05 16 22 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 23 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 24 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16 25 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 26 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.51 6.15 -51.93 -0.32 0.19 16 32 H 0.06 0.57 7.59 -51.92 -0.39 0.18 16 33 H 0.09 0.64 7.16 -51.93 -0.37 0.26 16 34 H 0.13 0.90 5.81 -52.49 -0.30 0.60 16 35 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 36 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.14 1.31 7.17 -52.49 -0.38 0.93 16 38 H 0.09 0.88 6.81 -51.93 -0.35 0.52 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 1.62 6.06 -51.93 -0.31 1.31 16 42 H 0.11 1.19 5.73 -51.93 -0.30 0.89 16 43 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 44 H 0.40 6.72 8.32 -40.82 -0.34 6.38 16 45 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 46 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 47 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 374.35 15.07 5.64 5.64 Total: -1.00 -32.00 374.35 -9.77 -41.78 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -6.80 Total: 3.53 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -2.72 Total: -1.59 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -1.34 Total: -52.90 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.08 Total: -11.64 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.00 -9.77 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795190876.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.990 kcal (2) G-P(sol) polarization free energy of solvation -32.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds