Wall clock time and date at job start Tue Mar 31 2020 19:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.69805 * 2 1 4 4 C 1.53157 * 109.58980 * 239.63499 * 2 1 3 5 5 C 1.53042 * 109.32548 * 185.56997 * 4 2 1 6 6 H 1.09002 * 109.45944 * 181.38164 * 5 4 2 7 7 N 1.46501 * 109.46215 * 301.35780 * 5 4 2 8 8 C 1.36940 * 120.00015 * 205.02726 * 7 5 4 9 9 H 1.07998 * 119.99929 * 0.02562 * 8 7 5 10 10 C 1.38807 * 119.99758 * 180.02562 * 8 7 5 11 11 N 1.31615 * 120.00103 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 120.00040 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.46705 * 90.00604 * 12 10 8 14 14 H 1.48495 * 109.47551 * 330.00290 * 12 10 8 15 15 H 1.48506 * 109.47296 * 210.00096 * 12 10 8 16 16 C 1.53041 * 109.52584 * 61.37254 * 5 4 2 17 17 C 1.53189 * 109.31522 * 298.63853 * 16 5 4 18 18 N 1.46929 * 108.77302 * 54.63567 * 17 16 5 19 19 C 1.34776 * 120.63099 * 126.37034 * 18 17 16 20 20 O 1.21275 * 120.00094 * 174.21748 * 19 18 17 21 21 C 1.50703 * 119.99754 * 354.20992 * 19 18 17 22 22 C 1.52995 * 109.46918 * 180.02562 * 21 19 18 23 23 C 1.50702 * 109.47416 * 180.02562 * 22 21 19 24 24 C 1.38231 * 120.40443 * 89.99846 * 23 22 21 25 25 N 1.31845 * 120.81914 * 180.02562 * 24 23 22 26 26 C 1.31876 * 121.75238 * 359.97438 * 25 24 23 27 27 C 1.38421 * 120.72368 * 359.97438 * 26 25 24 28 28 F 1.35098 * 120.44201 * 179.97438 * 27 26 25 29 29 C 1.38589 * 120.40471 * 269.72759 * 23 22 21 30 30 H 1.08997 * 109.46923 * 305.43292 * 1 2 3 31 31 H 1.08997 * 109.46741 * 65.43667 * 1 2 3 32 32 H 1.08999 * 109.46989 * 185.43783 * 1 2 3 33 33 H 1.09001 * 109.48304 * 65.62412 * 4 2 1 34 34 H 1.08999 * 109.50680 * 305.53087 * 4 2 1 35 35 H 0.97004 * 119.99628 * 25.02929 * 7 5 4 36 36 H 0.97002 * 120.00646 * 180.02562 * 11 10 8 37 37 H 1.09003 * 109.49701 * 58.60041 * 16 5 4 38 38 H 1.09005 * 109.49464 * 178.65484 * 16 5 4 39 39 H 1.08996 * 109.58899 * 174.42116 * 17 16 5 40 40 H 1.08996 * 109.58545 * 294.84929 * 17 16 5 41 41 H 1.08992 * 109.47279 * 300.00389 * 21 19 18 42 42 H 1.09008 * 109.46792 * 60.00554 * 21 19 18 43 43 H 1.09004 * 109.47575 * 300.00666 * 22 21 19 44 44 H 1.08998 * 109.47350 * 60.00256 * 22 21 19 45 45 H 1.07995 * 119.59143 * 359.97438 * 24 23 22 46 46 H 1.07996 * 119.64091 * 180.02562 * 26 25 24 47 47 H 1.08004 * 120.79920 * 359.97197 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2450 5 6 3.5675 -0.8479 -1.1700 6 1 3.9377 -1.3450 -2.0667 7 7 4.1571 0.4898 -1.0749 8 6 5.4412 0.7040 -1.4997 9 1 6.0192 -0.1133 -1.9052 10 6 5.9999 1.9714 -1.4090 11 7 7.2339 2.1774 -1.8178 12 14 4.9999 3.3850 -0.7083 13 1 5.2090 3.4590 0.7602 14 1 3.5597 3.1614 -0.9926 15 1 5.4363 4.6586 -1.3351 16 6 3.9569 -1.6656 0.0637 17 6 3.4651 -0.9468 1.3239 18 7 2.0226 -0.6994 1.1946 19 6 1.1673 -1.1068 2.1533 20 8 -0.0056 -0.8059 2.0873 21 6 1.6687 -1.9364 3.3072 22 6 0.5043 -2.2627 4.2445 23 6 1.0056 -3.0918 5.3988 24 6 1.4580 -2.4818 6.5538 25 7 1.8988 -3.1992 7.5684 26 6 1.9267 -4.5170 7.5264 27 6 1.4888 -5.1982 6.4037 28 9 1.5204 -6.5483 6.3666 29 6 1.0134 -4.4753 5.3174 30 1 -0.3633 0.5958 0.8373 31 1 -0.3633 0.4272 -0.9347 32 1 -0.3633 -1.0230 0.0974 33 1 1.7659 -0.1668 -2.1363 34 1 1.6031 -1.7254 -1.2909 35 1 3.6378 1.2239 -0.7109 36 1 7.6246 3.0630 -1.7541 37 1 3.4984 -2.6528 0.0054 38 1 5.0412 -1.7700 0.1035 39 1 3.6518 -1.5716 2.1973 40 1 3.9904 0.0021 1.4318 41 1 2.1001 -2.8628 2.9282 42 1 2.4292 -1.3778 3.8529 43 1 0.0723 -1.3364 4.6235 44 1 -0.2560 -2.8214 3.6987 45 1 1.4511 -1.4043 6.6257 46 1 2.2943 -5.0708 8.3775 47 1 0.6614 -4.9790 4.4292 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044883621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:02 Heat of formation + Delta-G solvation = -24.676806 kcal Electronic energy + Delta-G solvation = -29083.862140 eV Core-core repulsion = 24988.711129 eV Total energy + Delta-G solvation = -4095.151011 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.37395 -40.76177 -40.30677 -37.76620 -35.10813 -34.38085 -32.91648 -32.01554 -31.91650 -30.22411 -29.65759 -27.22330 -25.67452 -24.27896 -24.11497 -23.16495 -22.52823 -21.45076 -19.92489 -18.39049 -17.81782 -17.80666 -17.68936 -17.24073 -16.65325 -16.22163 -16.05340 -15.56654 -14.76277 -14.53385 -14.35945 -14.23392 -14.05569 -13.91236 -13.72685 -13.57044 -13.48154 -13.13176 -12.98211 -12.60150 -12.48890 -12.38758 -12.28069 -12.06840 -11.70851 -11.39039 -11.33022 -11.09839 -10.96452 -10.82371 -10.53947 -10.30131 -10.17844 -10.09083 -10.02503 -9.64573 -9.33011 -9.03259 -8.94920 -8.35076 -7.35624 -5.84271 -3.20367 0.46486 0.63537 2.65676 3.01562 3.21798 3.30282 3.33085 3.39886 3.56839 3.99502 4.16965 4.29649 4.44668 4.51518 4.55574 4.69662 4.74910 4.95335 5.06106 5.08637 5.18300 5.24179 5.29891 5.32870 5.37355 5.46325 5.46653 5.51051 5.55679 5.67839 5.77600 5.81636 5.82654 5.92477 5.98379 6.10079 6.18740 6.25894 6.33448 6.42042 6.55027 6.58102 6.64757 6.89173 7.38168 7.57172 7.91657 8.25363 8.34742 9.12623 9.85246 10.04671 11.34015 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.015043 B = 0.002661 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.934909 B =10519.940640 C =10994.965250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.143 3.857 3 H 0.071 0.929 4 C -0.136 4.136 5 C 0.179 3.821 6 H 0.060 0.940 7 N -0.746 5.746 8 C -0.244 4.244 9 H 0.091 0.909 10 C 0.007 3.993 11 N -0.932 5.932 12 Si 0.879 3.121 13 H -0.284 1.284 14 H -0.278 1.278 15 H -0.290 1.290 16 C -0.149 4.149 17 C 0.111 3.889 18 N -0.601 5.601 19 C 0.514 3.486 20 O -0.544 6.544 21 C -0.138 4.138 22 C -0.061 4.061 23 C -0.100 4.100 24 C 0.093 3.907 25 N -0.454 5.454 26 C 0.067 3.933 27 C 0.051 3.949 28 F -0.130 7.130 29 C -0.107 4.107 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.360 0.640 36 H 0.260 0.740 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.165 0.835 46 H 0.166 0.834 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.938 -13.180 14.387 23.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.041 3.959 3 H 0.088 0.912 4 C -0.175 4.175 5 C 0.070 3.930 6 H 0.078 0.922 7 N -0.390 5.390 8 C -0.374 4.374 9 H 0.109 0.891 10 C -0.189 4.189 11 N -0.580 5.580 12 Si 0.709 3.291 13 H -0.211 1.211 14 H -0.204 1.204 15 H -0.217 1.217 16 C -0.190 4.190 17 C -0.011 4.011 18 N -0.333 5.333 19 C 0.302 3.698 20 O -0.423 6.423 21 C -0.178 4.178 22 C -0.100 4.100 23 C -0.102 4.102 24 C -0.064 4.064 25 N -0.161 5.161 26 C -0.092 4.092 27 C 0.029 3.971 28 F -0.109 7.109 29 C -0.134 4.134 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.194 0.806 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.182 0.818 46 H 0.183 0.817 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.000 -12.648 14.987 24.095 hybrid contribution -0.547 0.349 -0.348 0.736 sum -14.547 -12.299 14.638 24.024 Atomic orbital electron populations 1.22188 0.92958 1.03189 1.00852 1.21242 0.95092 0.95578 0.84027 0.91152 1.22281 0.97386 1.00609 0.97267 1.20156 0.90153 0.87142 0.95594 0.92225 1.42875 1.14238 1.05209 1.76697 1.19061 0.87987 0.95966 1.34356 0.89143 1.24651 0.96037 0.97079 1.01140 1.69687 1.13482 1.22095 1.52738 0.86646 0.79835 0.83463 0.79115 1.21077 1.20397 1.21657 1.22488 1.01956 0.97967 0.96610 1.21768 0.79058 1.01664 0.98625 1.48241 1.07880 1.57020 1.20208 1.20457 0.86010 0.80091 0.83256 1.90725 1.17271 1.57359 1.76914 1.21731 0.99428 1.01117 0.95557 1.20322 0.97166 1.00026 0.92458 1.20908 0.98517 0.93406 0.97374 1.22867 0.94463 1.00883 0.88231 1.67764 1.13056 1.06274 1.29048 1.22925 0.98502 0.90781 0.96957 1.18834 1.03194 0.78004 0.97061 1.91535 1.94296 1.28292 1.96780 1.21635 0.99107 0.94130 0.98509 0.90579 0.93969 0.91973 0.90636 0.91636 0.80611 0.93005 0.92926 0.90253 0.90756 0.90162 0.88794 0.88677 0.89201 0.89536 0.81795 0.81651 0.83408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 7.61 37.16 0.28 -1.61 16 2 C 0.14 2.14 3.19 -67.61 -0.22 1.92 16 3 H 0.07 1.18 6.64 -51.93 -0.34 0.84 16 4 C -0.14 -2.01 5.07 -26.63 -0.13 -2.15 16 5 C 0.18 3.09 3.10 -67.89 -0.21 2.88 16 6 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 7 N -0.75 -16.07 4.11 -53.38 -0.22 -16.29 16 8 C -0.24 -6.42 10.41 -15.06 -0.16 -6.57 16 9 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 10 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 11 N -0.93 -28.32 13.97 55.49 0.78 -27.55 16 12 Si 0.88 21.33 27.73 -169.99 -4.71 16.61 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 C -0.15 -2.20 5.78 -26.61 -0.15 -2.36 16 17 C 0.11 1.51 6.09 -3.71 -0.02 1.49 16 18 N -0.60 -8.21 2.97 -165.24 -0.49 -8.70 16 19 C 0.51 6.45 7.50 -10.98 -0.08 6.37 16 20 O -0.54 -7.97 11.55 5.56 0.06 -7.90 16 21 C -0.14 -1.22 4.04 -27.88 -0.11 -1.34 16 22 C -0.06 -0.49 4.66 -27.88 -0.13 -0.62 16 23 C -0.10 -0.77 5.15 -104.49 -0.54 -1.31 16 24 C 0.09 0.76 10.86 -17.55 -0.19 0.57 16 25 N -0.45 -4.33 10.36 -13.20 -0.14 -4.46 16 26 C 0.07 0.55 11.17 -17.47 -0.20 0.36 16 27 C 0.05 0.42 7.34 -39.28 -0.29 0.14 16 28 F -0.13 -1.16 17.28 2.25 0.04 -1.12 16 29 C -0.11 -0.83 9.85 -39.21 -0.39 -1.21 16 30 H 0.08 1.15 6.54 -51.93 -0.34 0.81 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.89 6.96 -51.93 -0.36 0.53 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.36 7.79 3.92 -40.82 -0.16 7.63 16 36 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.07 0.79 5.93 -51.93 -0.31 0.49 16 40 H 0.08 1.30 7.74 -51.93 -0.40 0.89 16 41 H 0.09 0.74 7.93 -51.93 -0.41 0.33 16 42 H 0.09 0.77 7.71 -51.92 -0.40 0.37 16 43 H 0.09 0.73 8.05 -51.93 -0.42 0.31 16 44 H 0.09 0.71 8.05 -51.93 -0.42 0.29 16 45 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.17 1.00 8.06 -52.49 -0.42 0.57 16 47 H 0.15 0.92 8.06 -52.48 -0.42 0.49 16 LS Contribution 374.83 15.07 5.65 5.65 Total: -1.00 -31.13 374.83 -8.62 -39.75 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.96 Total: 7.35 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -2.63 Total: -3.33 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: -0.07 Total: -57.00 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: 0.06 Total: -7.90 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.71 Total: 16.61 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.13 -8.62 -39.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044883621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.074 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds