Wall clock time and date at job start Tue Mar 31 2020 20:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.74378 * 2 1 4 4 C 1.53807 * 109.69466 * 120.66609 * 2 1 3 5 5 N 1.46970 * 108.57372 * 169.29242 * 4 2 1 6 6 C 1.34777 * 120.59146 * 124.62698 * 5 4 2 7 7 O 1.21585 * 119.99916 * 185.78790 * 6 5 4 8 8 N 1.34778 * 120.00208 * 5.78627 * 6 5 4 9 9 C 1.39729 * 120.00004 * 174.79291 * 8 6 5 10 10 C 1.40840 * 119.76509 * 179.97438 * 9 8 6 11 11 C 1.35974 * 119.73271 * 180.02562 * 10 9 8 12 12 C 1.40987 * 119.30206 * 0.02562 * 11 10 9 13 13 O 1.22088 * 120.23122 * 180.02562 * 12 11 10 14 14 N 1.34817 * 119.54007 * 359.97438 * 12 11 10 15 15 C 1.46495 * 119.89285 * 179.97438 * 14 12 11 16 16 N 1.31052 * 119.76430 * 359.73527 * 9 8 6 17 17 C 1.46958 * 118.81340 * 304.64119 * 5 4 2 18 18 C 1.53375 * 108.63389 * 55.22985 * 17 5 4 19 19 H 1.08997 * 109.75322 * 190.74716 * 18 17 5 20 20 C 1.53005 * 109.60648 * 70.31876 * 18 17 5 21 21 N 1.46961 * 108.63615 * 310.57691 * 18 17 5 22 22 C 1.36934 * 120.59524 * 235.20332 * 21 18 17 23 23 H 1.07999 * 120.00046 * 143.88876 * 22 21 18 24 24 C 1.38812 * 119.99927 * 323.61623 * 22 21 18 25 25 N 1.31623 * 119.99871 * 3.46839 * 24 22 21 26 26 Si 1.86795 * 119.99976 * 183.47209 * 24 22 21 27 27 H 1.48498 * 109.47317 * 90.00192 * 26 24 22 28 28 H 1.48511 * 109.47008 * 209.99634 * 26 24 22 29 29 H 1.48494 * 109.47541 * 329.99700 * 26 24 22 30 30 H 1.09007 * 109.46924 * 185.30322 * 1 2 3 31 31 H 1.09000 * 109.47276 * 305.29904 * 1 2 3 32 32 H 1.08997 * 109.47185 * 65.30844 * 1 2 3 33 33 H 1.08993 * 109.74353 * 49.50343 * 4 2 1 34 34 H 1.08999 * 109.67105 * 289.03611 * 4 2 1 35 35 H 0.96995 * 119.99766 * 354.79281 * 8 6 5 36 36 H 1.08003 * 120.12918 * 0.02562 * 10 9 8 37 37 H 1.08005 * 120.34701 * 179.97438 * 11 10 9 38 38 H 1.08998 * 109.46872 * 90.00482 * 15 14 12 39 39 H 1.08997 * 109.47754 * 210.00885 * 15 14 12 40 40 H 1.09000 * 109.46882 * 330.00906 * 15 14 12 41 41 H 1.08994 * 109.61531 * 295.48865 * 17 5 4 42 42 H 1.08997 * 109.75394 * 175.05451 * 17 5 4 43 43 H 1.08994 * 109.47319 * 300.85450 * 20 18 17 44 44 H 1.08997 * 109.47385 * 60.85600 * 20 18 17 45 45 H 1.09004 * 109.46580 * 180.85608 * 20 18 17 46 46 H 0.97001 * 119.99905 * 185.00143 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8983 1.0260 0.0000 4 6 2.0484 -0.7386 1.2456 5 7 3.4950 -0.9507 1.0959 6 6 4.3534 -0.5144 2.0388 7 8 5.5524 -0.6008 1.8562 8 7 3.8829 0.0178 3.1842 9 6 4.7681 0.3699 4.2064 10 6 4.2710 0.9261 5.4010 11 6 5.1331 1.2689 6.3951 12 6 6.5155 1.0612 6.2118 13 8 7.3046 1.3624 7.0933 14 7 6.9599 0.5268 5.0566 15 6 8.3947 0.3081 4.8577 16 7 6.0545 0.1757 4.0485 17 6 3.9887 -1.6469 -0.1005 18 6 3.4698 -0.9133 -1.3435 19 1 3.6613 -1.5140 -2.2325 20 6 4.1761 0.4376 -1.4746 21 7 2.0233 -0.7010 -1.1938 22 6 1.1511 -1.1436 -2.1522 23 1 0.1841 -1.5297 -1.8655 24 6 1.5077 -1.0908 -3.4927 25 7 2.7092 -0.6795 -3.8384 26 14 0.2822 -1.6034 -4.8060 27 1 -0.5142 -0.4231 -5.2277 28 1 1.0123 -2.1519 -5.9772 29 1 -0.6255 -2.6427 -4.2575 30 1 -0.3633 -1.0233 0.0950 31 1 -0.3634 0.5938 0.8387 32 1 -0.3633 0.4293 -0.9337 33 1 1.5453 -1.7009 1.3390 34 1 1.8569 -0.1377 2.1346 35 1 2.9298 0.1564 3.2988 36 1 3.2094 1.0797 5.5269 37 1 4.7628 1.6966 7.3151 38 1 8.6627 -0.6879 5.2102 39 1 8.6319 0.3942 3.7973 40 1 8.9571 1.0553 5.4176 41 1 3.6236 -2.6739 -0.1030 42 1 5.0786 -1.6460 -0.1037 43 1 3.9881 1.0341 -0.5819 44 1 5.2485 0.2777 -1.5854 45 1 3.7947 0.9635 -2.3499 46 1 2.9345 -0.5733 -4.7759 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333453473.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:47 Heat of formation + Delta-G solvation = 66.898187 kcal Electronic energy + Delta-G solvation = -30048.572090 eV Core-core repulsion = 25977.312030 eV Total energy + Delta-G solvation = -4071.260060 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.25832 -40.19419 -38.09312 -37.03873 -35.26222 -34.20442 -33.64910 -32.65557 -31.45526 -30.68465 -28.06966 -27.71860 -26.41055 -25.65282 -24.50906 -23.70117 -23.02286 -21.09027 -20.58590 -19.14295 -18.66899 -17.90876 -17.31410 -16.76946 -16.31239 -16.15080 -15.74149 -15.43076 -15.13151 -14.74270 -14.19353 -13.99702 -13.79289 -13.67846 -13.58226 -13.32104 -13.30241 -13.15532 -12.59317 -12.52220 -12.04161 -11.80701 -11.61790 -11.46633 -11.27153 -10.99274 -10.88564 -10.70365 -10.66379 -10.55843 -10.17746 -10.14100 -10.11508 -10.05372 -9.84497 -9.66338 -9.42303 -8.49002 -8.44362 -8.10963 -6.58707 -5.89318 -3.43184 0.22063 1.64188 1.82290 2.66192 3.09981 3.30666 3.37921 3.39351 3.53231 3.75058 4.06826 4.28409 4.38489 4.44677 4.99150 5.10366 5.26364 5.28884 5.29967 5.38795 5.47751 5.51521 5.54537 5.58168 5.73075 5.87542 5.95027 6.07117 6.15808 6.23060 6.28448 6.30260 6.40768 6.57202 6.72573 6.79500 6.90819 6.93109 6.99801 7.06229 7.52242 7.60774 7.69366 7.74438 7.80685 8.07238 8.43611 8.70820 9.13992 9.70918 10.30693 11.17008 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027953 B = 0.002771 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.448013 B =10102.796837 C =10797.161170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.155 3.845 3 H 0.032 0.968 4 C 0.097 3.903 5 N -0.604 5.604 6 C 0.693 3.307 7 O -0.542 6.542 8 N -0.659 5.659 9 C 0.331 3.669 10 C -0.091 4.091 11 C -0.148 4.148 12 C 0.486 3.514 13 O -0.551 6.551 14 N -0.402 5.402 15 C 0.101 3.899 16 N -0.210 5.210 17 C 0.108 3.892 18 C 0.175 3.825 19 H 0.120 0.880 20 C -0.133 4.133 21 N -0.582 5.582 22 C -0.254 4.254 23 H 0.068 0.932 24 C 0.014 3.986 25 N -0.897 5.897 26 Si 0.898 3.102 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.279 1.279 30 H 0.053 0.947 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.416 0.584 36 H 0.153 0.847 37 H 0.166 0.834 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.018 0.982 44 H 0.029 0.971 45 H 0.068 0.932 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.037 2.035 15.831 15.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.047 3.953 3 H 0.050 0.950 4 C -0.029 4.029 5 N -0.340 5.340 6 C 0.394 3.606 7 O -0.414 6.414 8 N -0.317 5.317 9 C 0.063 3.937 10 C -0.116 4.116 11 C -0.178 4.178 12 C 0.281 3.719 13 O -0.430 6.430 14 N -0.222 5.222 15 C -0.040 4.040 16 N -0.035 5.035 17 C -0.015 4.015 18 C 0.068 3.932 19 H 0.138 0.862 20 C -0.192 4.192 21 N -0.305 5.305 22 C -0.384 4.384 23 H 0.085 0.915 24 C -0.185 4.185 25 N -0.541 5.541 26 Si 0.727 3.273 27 H -0.214 1.214 28 H -0.217 1.217 29 H -0.205 1.205 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.257 0.743 36 H 0.171 0.829 37 H 0.184 0.816 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.077 0.923 42 H 0.100 0.900 43 H 0.037 0.963 44 H 0.048 0.952 45 H 0.087 0.913 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.087 1.678 15.287 15.519 hybrid contribution -1.853 0.277 -0.133 1.878 sum 0.235 1.955 15.154 15.281 Atomic orbital electron populations 1.21778 0.95164 1.01203 1.01253 1.20860 0.93188 0.93932 0.87335 0.95018 1.22481 0.80520 1.00751 0.99111 1.47277 1.06005 1.59561 1.21184 1.15925 0.85776 0.79178 0.79712 1.90999 1.12810 1.59823 1.77764 1.42854 1.09299 1.65348 1.14170 1.18927 0.88839 0.97305 0.88598 1.21774 1.02591 0.95895 0.91349 1.22571 0.92231 1.01773 1.01177 1.17686 0.90665 0.80690 0.82895 1.90975 1.57626 1.53515 1.40900 1.49449 1.07954 1.52946 1.11822 1.21805 0.75253 1.02705 1.04249 1.76149 0.99881 1.17137 1.10317 1.22521 0.99613 0.95055 0.84315 1.20971 0.82635 0.95118 0.94506 0.86237 1.21926 0.97812 0.99309 1.00148 1.44093 1.01947 1.64422 1.20034 1.19086 0.98451 1.35379 0.85450 0.91458 1.25331 0.96548 0.98978 0.97630 1.69839 1.18041 1.49867 1.16315 0.86373 0.80969 0.78135 0.81819 1.21403 1.21702 1.20471 0.92758 0.94201 0.91146 0.91250 0.92452 0.74340 0.82909 0.81606 0.91085 0.89022 0.89037 0.92322 0.89951 0.96268 0.95180 0.91289 0.93350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.02 37.16 0.30 -1.81 16 2 C 0.15 2.72 3.25 -67.25 -0.22 2.50 16 3 H 0.03 0.61 7.38 -51.93 -0.38 0.22 16 4 C 0.10 1.37 5.89 -3.37 -0.02 1.35 16 5 N -0.60 -9.99 2.59 -177.95 -0.46 -10.45 16 6 C 0.69 11.47 8.25 -86.92 -0.72 10.75 16 7 O -0.54 -10.89 14.05 5.29 0.07 -10.81 16 8 N -0.66 -8.02 5.32 -15.55 -0.08 -8.10 16 9 C 0.33 4.08 7.55 -154.79 -1.17 2.91 16 10 C -0.09 -0.75 9.90 -39.41 -0.39 -1.14 16 11 C -0.15 -1.40 10.00 -39.35 -0.39 -1.79 16 12 C 0.49 6.49 7.50 -15.20 -0.11 6.38 16 13 O -0.55 -8.75 16.71 4.84 0.08 -8.66 16 14 N -0.40 -5.54 3.91 -70.17 -0.27 -5.82 16 15 C 0.10 1.14 10.74 59.84 0.64 1.78 16 16 N -0.21 -3.19 9.10 31.41 0.29 -2.91 16 17 C 0.11 2.05 5.97 -3.60 -0.02 2.03 16 18 C 0.17 3.79 2.34 -67.48 -0.16 3.63 16 19 H 0.12 2.98 5.92 -51.93 -0.31 2.67 16 20 C -0.13 -2.91 8.90 37.16 0.33 -2.57 16 21 N -0.58 -12.68 2.68 -156.76 -0.42 -13.10 16 22 C -0.25 -6.12 8.28 -15.06 -0.12 -6.24 16 23 H 0.07 1.58 6.54 -52.49 -0.34 1.24 16 24 C 0.01 0.36 5.30 -17.43 -0.09 0.27 16 25 N -0.90 -23.52 9.62 55.49 0.53 -22.99 16 26 Si 0.90 20.06 29.56 -169.99 -5.02 15.04 16 27 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 29 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 30 H 0.05 0.83 7.61 -51.93 -0.40 0.44 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 1.24 7.45 -51.93 -0.39 0.86 16 33 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 34 H 0.06 0.58 5.62 -51.93 -0.29 0.29 16 35 H 0.42 3.54 6.19 -40.82 -0.25 3.29 16 36 H 0.15 0.59 8.06 -52.48 -0.42 0.17 16 37 H 0.17 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.09 0.95 7.42 -51.93 -0.39 0.57 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.08 1.61 6.97 -51.93 -0.36 1.25 16 43 H 0.02 0.40 7.00 -51.93 -0.36 0.03 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.07 1.68 7.23 -51.93 -0.38 1.31 16 46 H 0.26 6.64 8.32 -40.82 -0.34 6.30 16 LS Contribution 365.36 15.07 5.51 5.51 Total: -1.00 -32.42 365.36 -8.29 -40.72 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.36 Total: 3.54 kcal Atomic # 6 Polarization: 20.19 SS G_CDS: -2.15 Total: 18.05 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: -0.42 Total: -63.37 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: 0.16 Total: -19.48 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.42 -8.29 -40.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333453473.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.615 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds