Wall clock time and date at job start Tue Mar 31 2020 18:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46859 * 2 1 4 4 C 1.50695 * 109.47167 * 119.99452 * 2 1 3 5 5 O 1.21289 * 119.99627 * 113.30837 * 4 2 1 6 6 N 1.34774 * 120.00332 * 293.31039 * 4 2 1 7 7 C 1.39923 * 119.99815 * 184.75674 * 6 4 2 8 8 C 1.38914 * 120.05875 * 324.51223 * 7 6 4 9 9 C 1.38096 * 119.98011 * 179.77524 * 8 7 6 10 10 C 1.38264 * 120.09724 * 0.48291 * 9 8 7 11 11 C 1.38495 * 120.11577 * 359.79844 * 10 9 8 12 12 F 1.35099 * 119.99445 * 179.97438 * 11 10 9 13 13 C 1.38355 * 120.01533 * 359.94898 * 11 10 9 14 14 N 1.46896 * 109.47269 * 240.00106 * 2 1 3 15 15 C 1.46958 * 111.00312 * 74.82645 * 14 2 1 16 16 C 1.53050 * 109.36654 * 176.81089 * 15 14 2 17 17 N 1.46950 * 109.36131 * 58.40266 * 16 15 14 18 18 C 1.46911 * 110.99734 * 176.81389 * 17 16 15 19 19 C 1.50693 * 109.46987 * 58.89310 * 18 17 16 20 20 H 1.07997 * 120.00238 * 5.09585 * 19 18 17 21 21 C 1.37885 * 119.99687 * 185.08831 * 19 18 17 22 22 N 1.31513 * 119.99843 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 119.99854 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47291 * 90.00064 * 23 21 19 25 25 H 1.48502 * 109.47304 * 209.99770 * 23 21 19 26 26 H 1.48494 * 109.47451 * 329.99966 * 23 21 19 27 27 C 1.46957 * 110.88434 * 300.67624 * 17 16 15 28 28 C 1.46961 * 111.00052 * 311.02763 * 14 2 1 29 29 H 1.08996 * 109.47084 * 60.00296 * 1 2 3 30 30 H 1.09007 * 109.46228 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47311 * 299.99830 * 1 2 3 32 32 H 0.97002 * 120.00167 * 4.74886 * 6 4 2 33 33 H 1.08002 * 120.00291 * 0.02562 * 8 7 6 34 34 H 1.08003 * 119.95332 * 180.25762 * 9 8 7 35 35 H 1.08002 * 119.94688 * 179.76374 * 10 9 8 36 36 H 1.08000 * 120.04433 * 180.02562 * 13 11 10 37 37 H 1.09002 * 109.48945 * 296.78068 * 15 14 2 38 38 H 1.09002 * 109.48583 * 56.84722 * 15 14 2 39 39 H 1.09001 * 109.48708 * 298.43494 * 16 15 14 40 40 H 1.09004 * 109.48746 * 178.37268 * 16 15 14 41 41 H 1.09000 * 109.46874 * 178.89844 * 18 17 16 42 42 H 1.09005 * 109.46587 * 298.89378 * 18 17 16 43 43 H 0.96998 * 120.00032 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.48992 * 299.35688 * 27 17 16 45 45 H 1.08998 * 109.49259 * 179.29175 * 27 17 16 46 46 H 1.08998 * 109.48771 * 303.15848 * 28 14 2 47 47 H 1.09001 * 109.48680 * 63.20167 * 28 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.6264 -1.7623 1.1233 6 7 1.8216 -0.1766 2.4500 7 6 2.3731 -0.7831 3.5839 8 6 2.4721 -2.1669 3.6541 9 6 3.0210 -2.7636 4.7720 10 6 3.4632 -1.9862 5.8264 11 6 3.3610 -0.6064 5.7631 12 9 3.7934 0.1508 6.7950 13 6 2.8167 -0.0034 4.6432 14 7 2.0198 -0.6924 -1.1994 15 6 1.8568 0.1461 -2.3952 16 6 2.4498 -0.5769 -3.6068 17 7 1.7762 -1.8715 -3.7792 18 6 2.2660 -2.5641 -4.9787 19 6 3.7529 -2.7796 -4.8623 20 1 4.2678 -2.5114 -3.9517 21 6 4.4560 -3.3194 -5.9185 22 7 5.7536 -3.5080 -5.8168 23 14 3.5655 -3.7828 -7.4937 24 1 3.5560 -2.6201 -8.4175 25 1 4.2639 -4.9228 -8.1402 26 1 2.1687 -4.1740 -7.1760 27 6 1.9392 -2.7102 -2.5836 28 6 1.3462 -1.9872 -1.3719 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.2877 0.6281 2.5416 33 1 2.1237 -2.7757 2.8329 34 1 3.1016 -3.8394 4.8244 35 1 3.8885 -2.4556 6.7012 36 1 2.7372 1.0725 4.5931 37 1 0.7967 0.3334 -2.5663 38 1 2.3747 1.0939 -2.2480 39 1 3.5157 -0.7398 -3.4472 40 1 2.3042 0.0307 -4.5000 41 1 1.7653 -3.5278 -5.0717 42 1 2.0545 -1.9582 -5.8598 43 1 6.2482 -3.8880 -6.5596 44 1 2.9993 -2.8975 -2.4124 45 1 1.4214 -3.6580 -2.7308 46 1 1.4918 -2.5947 -0.4788 47 1 0.2803 -1.8242 -1.5311 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051382401.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:46:03 Heat of formation + Delta-G solvation = -49.817026 kcal Electronic energy + Delta-G solvation = -28969.062718 eV Core-core repulsion = 24872.821545 eV Total energy + Delta-G solvation = -4096.241173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.92956 -41.86814 -40.35301 -39.17022 -37.02171 -35.86261 -34.58251 -32.44474 -31.79572 -31.62076 -30.42538 -29.28528 -26.86632 -25.47071 -24.50049 -23.97789 -23.62710 -22.75340 -21.28337 -20.37198 -19.26187 -18.80214 -18.28106 -17.52969 -17.28249 -17.10581 -16.64467 -16.59474 -16.17666 -16.06082 -15.91040 -15.85225 -15.63250 -15.14404 -14.76479 -14.63691 -14.56921 -14.29260 -14.17440 -13.68111 -13.58969 -13.33019 -13.22582 -13.00829 -12.86433 -12.74970 -12.60439 -12.35333 -12.26952 -12.05073 -11.85488 -11.81810 -11.70121 -11.47204 -11.32899 -10.79520 -10.69952 -9.86633 -9.29301 -9.20812 -8.98946 -8.31426 -6.37240 0.08533 0.16481 1.34681 1.36810 1.49228 1.51920 1.81559 2.33617 2.62220 2.94487 3.03136 3.28696 3.31923 3.57142 3.82162 3.92207 4.02136 4.06563 4.12730 4.16486 4.26018 4.36267 4.39058 4.44917 4.47431 4.55332 4.69956 4.70827 4.81456 4.92916 4.96085 4.97574 5.04094 5.06652 5.14490 5.15552 5.19104 5.21399 5.29498 5.32242 5.42752 5.51564 5.91496 5.96208 6.07487 6.14969 6.33359 6.39822 6.43007 6.70645 7.12480 7.29286 8.85514 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.019498 B = 0.002377 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.729917 B =11778.238928 C =12540.547058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.071 3.929 3 H 0.136 0.864 4 C 0.519 3.481 5 O -0.538 6.538 6 N -0.659 5.659 7 C 0.168 3.832 8 C -0.150 4.150 9 C -0.075 4.075 10 C -0.170 4.170 11 C 0.102 3.898 12 F -0.143 7.143 13 C -0.179 4.179 14 N -0.544 5.544 15 C 0.072 3.928 16 C 0.060 3.940 17 N -0.525 5.525 18 C 0.160 3.840 19 C -0.549 4.549 20 H 0.027 0.973 21 C 0.006 3.994 22 N -0.951 5.951 23 Si 0.956 3.044 24 H -0.263 1.263 25 H -0.286 1.286 26 H -0.245 1.245 27 C 0.066 3.934 28 C 0.074 3.926 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.430 0.570 33 H 0.127 0.873 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.160 0.840 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.008 0.992 40 H 0.077 0.923 41 H 0.027 0.973 42 H 0.035 0.965 43 H 0.266 0.734 44 H 0.002 0.998 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.788 11.029 21.941 28.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.041 4.041 3 H 0.154 0.846 4 C 0.307 3.693 5 O -0.413 6.413 6 N -0.307 5.307 7 C 0.073 3.927 8 C -0.170 4.170 9 C -0.093 4.093 10 C -0.190 4.190 11 C 0.082 3.918 12 F -0.121 7.121 13 C -0.200 4.200 14 N -0.269 5.269 15 C -0.055 4.055 16 C -0.068 4.068 17 N -0.248 5.248 18 C 0.033 3.967 19 C -0.587 4.587 20 H 0.046 0.954 21 C -0.191 4.191 22 N -0.591 5.591 23 Si 0.778 3.222 24 H -0.188 1.188 25 H -0.211 1.211 26 H -0.169 1.169 27 C -0.063 4.063 28 C -0.054 4.054 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.115 0.885 32 H 0.270 0.730 33 H 0.145 0.855 34 H 0.171 0.829 35 H 0.172 0.828 36 H 0.178 0.822 37 H 0.081 0.919 38 H 0.114 0.886 39 H 0.027 0.973 40 H 0.095 0.905 41 H 0.046 0.954 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.021 0.979 45 H 0.086 0.914 46 H 0.095 0.905 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.224 10.285 21.720 27.926 hybrid contribution 0.686 -0.224 -0.644 0.968 sum -13.538 10.060 21.076 26.994 Atomic orbital electron populations 1.22390 0.92464 1.03395 1.05215 1.21704 0.96138 0.99047 0.87218 0.84647 1.21217 0.78117 0.85216 0.84780 1.90729 1.40534 1.23650 1.86340 1.43372 1.52626 1.31050 1.03685 1.17519 0.96392 0.91625 0.87140 1.21460 1.02351 0.93891 0.99311 1.21159 0.95325 1.01409 0.91425 1.21386 1.04226 0.91680 1.01682 1.17534 0.99483 0.89338 0.85409 1.91497 1.87603 1.76138 1.56900 1.20946 1.03893 1.01721 0.93461 1.61835 1.58239 1.04086 1.02706 1.22174 1.00420 0.95476 0.87414 1.22015 0.95744 0.90987 0.98094 1.62700 1.54909 1.04210 1.03012 1.20030 0.91771 0.94433 0.90488 1.21896 0.94360 1.41838 1.00643 0.95441 1.26020 0.95392 0.94829 1.02895 1.70108 1.09023 1.46257 1.33726 0.85590 0.79697 0.78386 0.78496 1.18795 1.21140 1.16869 1.21925 0.97830 0.96210 0.90358 1.22107 0.96073 0.90342 0.96835 0.89939 0.92546 0.88504 0.73028 0.85503 0.82903 0.82793 0.82223 0.91939 0.88568 0.97345 0.90467 0.95447 0.94678 0.92550 0.97922 0.91424 0.90531 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 8.31 71.98 0.60 -1.64 16 2 C 0.07 1.33 2.70 44.17 0.12 1.45 16 3 H 0.14 1.80 7.93 -2.39 -0.02 1.78 16 4 C 0.52 11.75 6.76 87.66 0.59 12.34 16 5 O -0.54 -17.78 11.91 -3.06 -0.04 -17.82 16 6 N -0.66 -10.17 5.32 -303.53 -1.61 -11.78 16 7 C 0.17 3.19 6.29 38.15 0.24 3.43 16 8 C -0.15 -3.28 8.69 22.40 0.19 -3.09 16 9 C -0.07 -1.34 10.04 22.24 0.22 -1.11 16 10 C -0.17 -2.82 10.02 22.34 0.22 -2.59 16 11 C 0.10 1.83 7.30 22.36 0.16 1.99 16 12 F -0.14 -2.68 17.27 44.97 0.78 -1.90 16 13 C -0.18 -2.91 9.95 22.43 0.22 -2.69 16 14 N -0.54 -15.87 4.36 -874.86 -3.81 -19.68 16 15 C 0.07 1.99 5.39 86.31 0.47 2.45 16 16 C 0.06 2.34 5.23 86.31 0.45 2.80 16 17 N -0.53 -22.07 4.92 -900.27 -4.43 -26.50 16 18 C 0.16 7.81 4.21 85.55 0.36 8.17 16 19 C -0.55 -32.40 8.21 25.60 0.21 -32.19 16 20 H 0.03 1.86 6.07 -2.91 -0.02 1.84 16 21 C 0.01 0.36 5.47 84.66 0.46 0.83 16 22 N -0.95 -61.32 13.96 21.45 0.30 -61.02 16 23 Si 0.96 44.74 27.37 68.60 1.88 46.62 16 24 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 26 H -0.25 -10.63 6.69 99.48 0.67 -9.97 16 27 C 0.07 2.74 5.32 86.31 0.46 3.19 16 28 C 0.07 2.38 4.46 86.31 0.38 2.76 16 29 H 0.08 0.99 6.96 -2.39 -0.02 0.97 16 30 H 0.06 0.91 6.39 -2.38 -0.02 0.90 16 31 H 0.10 0.59 7.91 -2.39 -0.02 0.57 16 32 H 0.43 2.95 8.59 -92.71 -0.80 2.16 16 33 H 0.13 3.29 6.25 -2.91 -0.02 3.28 16 34 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 37 H 0.06 1.45 6.96 -2.39 -0.02 1.43 16 38 H 0.10 2.17 8.03 -2.39 -0.02 2.15 16 39 H 0.01 0.40 6.61 -2.39 -0.02 0.38 16 40 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 41 H 0.03 1.33 7.53 -2.39 -0.02 1.31 16 42 H 0.04 1.64 7.29 -2.38 -0.02 1.63 16 43 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 44 H 0.00 0.12 6.78 -2.39 -0.02 0.11 16 45 H 0.07 2.72 8.12 -2.39 -0.02 2.70 16 46 H 0.08 2.59 6.07 -2.39 -0.01 2.57 16 47 H 0.06 1.60 6.41 -2.39 -0.02 1.58 16 Total: -1.00 -79.06 368.86 -1.40 -80.46 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.17 Total: 15.51 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 5.37 Total: -3.89 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -9.55 Total: -118.98 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.04 Total: -17.82 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.78 Total: -1.90 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.62 kcal Total: -79.06 -1.40 -80.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051382401.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.643 kcal (2) G-P(sol) polarization free energy of solvation -79.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds