Wall clock time and date at job start Tue Mar 31 2020 20:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47411 * 2 1 4 4 C 1.46498 * 120.00412 * 270.00018 * 3 2 1 5 5 C 1.50701 * 109.47157 * 269.99909 * 4 3 2 6 6 H 1.08001 * 119.99967 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99647 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99781 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00396 * 0.02562 * 7 5 4 10 10 H 1.48507 * 109.46909 * 89.99618 * 9 7 5 11 11 H 1.48500 * 109.46976 * 209.99763 * 9 7 5 12 12 H 1.48494 * 109.47042 * 330.00152 * 9 7 5 13 13 C 1.34788 * 119.99644 * 90.00023 * 3 2 1 14 14 O 1.21279 * 119.99678 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99871 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.47013 * 173.76624 * 15 13 3 17 17 C 1.46708 * 110.99414 * 298.10966 * 16 15 13 18 18 C 1.53380 * 108.27720 * 174.13278 * 17 16 15 19 19 N 1.46710 * 108.26084 * 293.23224 * 18 17 16 20 20 C 1.46895 * 111.00090 * 174.33486 * 19 18 17 21 21 C 1.39929 * 112.11074 * 49.56583 * 19 18 17 22 22 C 1.39229 * 117.90199 * 161.99403 * 21 19 18 23 23 C 1.38217 * 120.38339 * 179.68503 * 22 21 19 24 24 F 1.35091 * 120.01907 * 179.97438 * 23 22 21 25 25 C 1.38453 * 119.96508 * 359.68368 * 23 22 21 26 26 C 1.38064 * 119.99236 * 0.67141 * 25 23 22 27 27 C 1.38942 * 122.49190 * 341.86837 * 21 19 18 28 28 H 1.08998 * 109.47068 * 300.00013 * 1 2 3 29 29 H 1.09002 * 109.46660 * 59.99671 * 1 2 3 30 30 H 1.08997 * 109.47117 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47084 * 240.00330 * 2 1 3 32 32 H 1.09001 * 109.47352 * 120.00609 * 2 1 3 33 33 H 1.08997 * 109.46845 * 29.99895 * 4 3 2 34 34 H 1.09001 * 109.46864 * 150.00264 * 4 3 2 35 35 H 0.97003 * 119.99994 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.47722 * 53.75952 * 15 13 3 37 37 H 1.09004 * 109.46762 * 293.75762 * 15 13 3 38 38 H 1.09006 * 109.70404 * 54.43942 * 17 16 15 39 39 H 1.09000 * 109.74210 * 293.85055 * 17 16 15 40 40 H 1.08999 * 109.70951 * 173.54064 * 18 17 16 41 41 H 1.09005 * 109.70112 * 52.92050 * 18 17 16 42 42 H 1.09006 * 109.47204 * 290.64731 * 20 19 18 43 43 H 1.08997 * 109.47404 * 50.65096 * 20 19 18 44 44 H 1.09003 * 109.47257 * 170.65049 * 20 19 18 45 45 H 1.07994 * 119.80790 * 359.65953 * 22 21 19 46 46 H 1.07997 * 120.00550 * 180.41914 * 25 23 22 47 47 H 1.08005 * 119.77822 * 179.74949 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2301 -1.0961 7 6 4.1492 2.3897 -2.8778 8 7 5.3912 2.1826 -3.2578 9 14 3.0129 3.4353 -3.9291 10 1 3.1164 4.8556 -3.5078 11 1 3.4059 3.3122 -5.3558 12 1 1.6132 2.9695 -3.7591 13 6 2.2430 2.0165 1.1673 14 8 2.6478 3.1597 1.1673 15 6 1.9924 1.3058 2.4724 16 7 2.4499 2.1490 3.5849 17 6 3.8932 2.3974 3.4971 18 6 4.2768 3.3972 4.5951 19 7 3.6519 4.6869 4.2813 20 6 3.8693 5.6547 5.3648 21 6 2.2890 4.5553 3.9925 22 6 1.4967 5.6985 4.0540 23 6 0.1454 5.6285 3.7722 24 9 -0.6166 6.7423 3.8345 25 6 -0.4257 4.4174 3.4200 26 6 0.3519 3.2780 3.3641 27 6 1.7129 3.3385 3.6494 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.5818 1.6878 -2.0283 34 1 2.0957 3.1411 -1.1382 35 1 5.7172 2.5732 -4.0837 36 1 2.5382 0.3623 2.4831 37 1 0.9255 1.1096 2.5801 38 1 4.1355 2.8143 2.5195 39 1 4.4369 1.4641 3.6435 40 1 5.3604 3.5116 4.6257 41 1 3.9170 3.0394 5.5599 42 1 3.2960 5.3535 6.2416 43 1 4.9293 5.6859 5.6168 44 1 3.5440 6.6430 5.0399 45 1 1.9405 6.6454 4.3237 46 1 -1.4802 4.3633 3.1931 47 1 -0.0980 2.3343 3.0930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072857498.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:15 Heat of formation + Delta-G solvation = -12.088628 kcal Electronic energy + Delta-G solvation = -30661.422201 eV Core-core repulsion = 26566.817054 eV Total energy + Delta-G solvation = -4094.605147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.69347 -41.16681 -39.11818 -36.63385 -36.35716 -35.19834 -32.75609 -30.64132 -30.38367 -30.01275 -29.64095 -27.88857 -26.00549 -24.71008 -23.72176 -23.04092 -22.55168 -21.36227 -19.90746 -18.50845 -17.91627 -17.09498 -16.92096 -16.87739 -16.35597 -15.66366 -15.40605 -15.35139 -14.82148 -14.78648 -14.59906 -14.31195 -14.09563 -13.96764 -13.57477 -13.44911 -12.94582 -12.76062 -12.64974 -12.52619 -12.29054 -12.23835 -12.17257 -11.89807 -11.77850 -11.60428 -11.41939 -11.24118 -11.00009 -10.81792 -10.70558 -10.52323 -10.18991 -10.04004 -9.82940 -9.57458 -9.03521 -8.61048 -8.17447 -7.76790 -7.20865 -6.11497 -4.10214 1.32376 1.37592 3.20912 3.27568 3.33319 3.36081 3.37032 3.65550 3.75158 4.02945 4.37689 4.49132 4.61808 4.71600 4.89631 4.90677 5.08911 5.13975 5.18697 5.22736 5.23349 5.25963 5.36068 5.37849 5.46757 5.47619 5.50991 5.64322 5.66053 5.72975 5.81368 5.90562 5.93527 6.04716 6.09683 6.18209 6.31613 6.33511 6.63686 6.71507 6.72698 6.92255 6.99331 7.03884 7.28932 7.36098 7.58524 8.17328 8.43298 8.85491 8.92174 9.49177 11.01792 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.011164 B = 0.004095 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.504535 B = 6835.885026 C = 6900.722164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 N -0.589 5.589 4 C 0.217 3.783 5 C -0.527 4.527 6 H 0.073 0.927 7 C 0.074 3.926 8 N -0.897 5.897 9 Si 0.875 3.125 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.476 3.524 14 O -0.522 6.522 15 C 0.028 3.972 16 N -0.468 5.468 17 C 0.030 3.970 18 C 0.058 3.942 19 N -0.487 5.487 20 C 0.025 3.975 21 C 0.128 3.872 22 C -0.172 4.172 23 C 0.089 3.911 24 F -0.146 7.146 25 C -0.155 4.155 26 C -0.107 4.107 27 C 0.099 3.901 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.035 0.965 35 H 0.264 0.736 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.054 0.946 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.136 0.864 46 H 0.131 0.869 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.898 -1.511 17.510 19.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.020 4.020 3 N -0.321 5.321 4 C 0.096 3.904 5 C -0.566 4.566 6 H 0.091 0.909 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.702 3.298 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.260 3.740 14 O -0.398 6.398 15 C -0.101 4.101 16 N -0.182 5.182 17 C -0.096 4.096 18 C -0.068 4.068 19 N -0.201 5.201 20 C -0.121 4.121 21 C 0.027 3.973 22 C -0.194 4.194 23 C 0.069 3.931 24 F -0.125 7.125 25 C -0.176 4.176 26 C -0.129 4.129 27 C -0.001 4.001 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.153 0.847 46 H 0.149 0.851 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.255 -0.957 17.394 19.277 hybrid contribution -0.729 0.761 -0.916 1.396 sum -8.984 -0.196 16.478 18.769 Atomic orbital electron populations 1.22231 0.96658 1.01681 1.02236 1.21479 0.93492 0.83852 1.03192 1.48004 1.63702 1.13300 1.07058 1.19637 0.97279 0.93366 0.80100 1.21286 0.95283 1.32905 1.07103 0.90864 1.24839 0.94959 0.95737 0.97344 1.69894 1.15120 1.44968 1.23580 0.86872 0.81475 0.81690 0.79792 1.19929 1.21048 1.19108 1.21190 0.79229 0.87570 0.85967 1.90729 1.44967 1.17595 1.86526 1.22565 1.03340 0.97246 0.86965 1.59449 1.05218 1.14413 1.39162 1.22646 0.86084 0.99449 1.01401 1.22312 1.00103 0.86896 0.97539 1.58614 1.10245 1.11297 1.39927 1.22538 1.02218 0.96191 0.91191 1.18202 0.87245 0.91288 1.00587 1.20730 0.92105 0.98651 1.07896 1.17214 0.88891 0.82703 1.04324 1.91451 1.75491 1.51139 1.94382 1.20738 1.00718 0.91329 1.04766 1.20657 0.91964 0.98403 1.01829 1.18465 0.92619 0.87792 1.01269 0.93059 0.92180 0.91834 0.89620 0.91371 0.95373 0.94684 0.92562 0.87427 0.87456 0.88773 0.89153 0.88746 0.92817 0.94329 0.90513 0.90470 0.84673 0.85110 0.85155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 10.24 37.16 0.38 -1.59 16 2 C 0.10 1.49 5.96 -4.04 -0.02 1.47 16 3 N -0.59 -11.41 2.46 -175.06 -0.43 -11.84 16 4 C 0.22 5.20 4.23 -5.19 -0.02 5.18 16 5 C -0.53 -14.89 9.94 -34.44 -0.34 -15.24 16 6 H 0.07 2.26 8.06 -52.49 -0.42 1.83 16 7 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 8 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 9 Si 0.87 21.73 27.47 -169.99 -4.67 17.06 16 10 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 13 C 0.48 9.02 6.72 -10.98 -0.07 8.95 16 14 O -0.52 -12.15 12.51 5.56 0.07 -12.08 16 15 C 0.03 0.39 4.17 -4.98 -0.02 0.37 16 16 N -0.47 -6.72 4.84 -172.16 -0.83 -7.55 16 17 C 0.03 0.44 5.42 -3.73 -0.02 0.42 16 18 C 0.06 0.73 5.69 -3.73 -0.02 0.70 16 19 N -0.49 -6.97 4.88 -178.68 -0.87 -7.85 16 20 C 0.02 0.26 8.88 60.06 0.53 0.79 16 21 C 0.13 2.01 5.78 -83.53 -0.48 1.53 16 22 C -0.17 -2.57 9.02 -39.22 -0.35 -2.93 16 23 C 0.09 1.34 7.29 -39.51 -0.29 1.05 16 24 F -0.15 -2.17 17.27 2.25 0.04 -2.13 16 25 C -0.16 -2.18 10.02 -39.57 -0.40 -2.57 16 26 C -0.11 -1.53 8.81 -39.29 -0.35 -1.88 16 27 C 0.10 1.54 3.96 -83.47 -0.33 1.21 16 28 H 0.05 0.55 7.42 -51.93 -0.39 0.16 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.09 1.31 8.07 -51.93 -0.42 0.90 16 32 H 0.07 0.79 6.27 -51.93 -0.33 0.46 16 33 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 34 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.11 1.26 7.06 -51.93 -0.37 0.89 16 37 H 0.11 1.22 5.23 -51.93 -0.27 0.95 16 38 H 0.09 1.81 5.67 -51.93 -0.29 1.51 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.61 8.13 -51.93 -0.42 0.18 16 42 H 0.04 0.37 8.13 -51.93 -0.42 -0.05 16 43 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 44 H 0.08 0.77 6.35 -51.93 -0.33 0.44 16 45 H 0.14 1.78 6.10 -52.49 -0.32 1.46 16 46 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 47 H 0.13 1.57 5.97 -52.48 -0.31 1.25 16 LS Contribution 369.20 15.07 5.56 5.56 Total: -1.00 -34.75 369.20 -8.98 -43.74 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.72 Total: 2.32 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -1.91 Total: -0.49 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -1.36 Total: -53.99 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.07 Total: -12.08 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.75 -8.98 -43.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072857498.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.648 kcal (2) G-P(sol) polarization free energy of solvation -34.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds