Wall clock time and date at job start Tue Mar 31 2020 20:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47411 * 2 1 4 4 C 1.46498 * 120.00412 * 270.00018 * 3 2 1 5 5 C 1.50701 * 109.47157 * 269.99909 * 4 3 2 6 6 H 1.08001 * 119.99967 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99647 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99781 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00396 * 0.02562 * 7 5 4 10 10 H 1.48507 * 109.46909 * 89.99618 * 9 7 5 11 11 H 1.48500 * 109.46976 * 209.99763 * 9 7 5 12 12 H 1.48494 * 109.47042 * 330.00152 * 9 7 5 13 13 C 1.34788 * 119.99644 * 90.00023 * 3 2 1 14 14 O 1.21279 * 119.99678 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99871 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.47013 * 173.76624 * 15 13 3 17 17 C 1.46708 * 110.99414 * 298.10966 * 16 15 13 18 18 C 1.53380 * 108.27720 * 174.13278 * 17 16 15 19 19 N 1.46710 * 108.26084 * 293.23224 * 18 17 16 20 20 C 1.46895 * 111.00090 * 174.33486 * 19 18 17 21 21 C 1.39929 * 112.11074 * 49.56583 * 19 18 17 22 22 C 1.39229 * 117.90199 * 161.99403 * 21 19 18 23 23 C 1.38217 * 120.38339 * 179.68503 * 22 21 19 24 24 F 1.35091 * 120.01907 * 179.97438 * 23 22 21 25 25 C 1.38453 * 119.96508 * 359.68368 * 23 22 21 26 26 C 1.38064 * 119.99236 * 0.67141 * 25 23 22 27 27 C 1.38942 * 122.49190 * 341.86837 * 21 19 18 28 28 H 1.08998 * 109.47068 * 300.00013 * 1 2 3 29 29 H 1.09002 * 109.46660 * 59.99671 * 1 2 3 30 30 H 1.08997 * 109.47117 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47084 * 240.00330 * 2 1 3 32 32 H 1.09001 * 109.47352 * 120.00609 * 2 1 3 33 33 H 1.08997 * 109.46845 * 29.99895 * 4 3 2 34 34 H 1.09001 * 109.46864 * 150.00264 * 4 3 2 35 35 H 0.97003 * 119.99994 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.47722 * 53.75952 * 15 13 3 37 37 H 1.09004 * 109.46762 * 293.75762 * 15 13 3 38 38 H 1.09006 * 109.70404 * 54.43942 * 17 16 15 39 39 H 1.09000 * 109.74210 * 293.85055 * 17 16 15 40 40 H 1.08999 * 109.70951 * 173.54064 * 18 17 16 41 41 H 1.09005 * 109.70112 * 52.92050 * 18 17 16 42 42 H 1.09006 * 109.47204 * 290.64731 * 20 19 18 43 43 H 1.08997 * 109.47404 * 50.65096 * 20 19 18 44 44 H 1.09003 * 109.47257 * 170.65049 * 20 19 18 45 45 H 1.07994 * 119.80790 * 359.65953 * 22 21 19 46 46 H 1.07997 * 120.00550 * 180.41914 * 25 23 22 47 47 H 1.08005 * 119.77822 * 179.74949 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2301 -1.0961 7 6 4.1492 2.3897 -2.8778 8 7 5.3912 2.1826 -3.2578 9 14 3.0129 3.4353 -3.9291 10 1 3.1164 4.8556 -3.5078 11 1 3.4059 3.3122 -5.3558 12 1 1.6132 2.9695 -3.7591 13 6 2.2430 2.0165 1.1673 14 8 2.6478 3.1597 1.1673 15 6 1.9924 1.3058 2.4724 16 7 2.4499 2.1490 3.5849 17 6 3.8932 2.3974 3.4971 18 6 4.2768 3.3972 4.5951 19 7 3.6519 4.6869 4.2813 20 6 3.8693 5.6547 5.3648 21 6 2.2890 4.5553 3.9925 22 6 1.4967 5.6985 4.0540 23 6 0.1454 5.6285 3.7722 24 9 -0.6166 6.7423 3.8345 25 6 -0.4257 4.4174 3.4200 26 6 0.3519 3.2780 3.3641 27 6 1.7129 3.3385 3.6494 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.5818 1.6878 -2.0283 34 1 2.0957 3.1411 -1.1382 35 1 5.7172 2.5732 -4.0837 36 1 2.5382 0.3623 2.4831 37 1 0.9255 1.1096 2.5801 38 1 4.1355 2.8143 2.5195 39 1 4.4369 1.4641 3.6435 40 1 5.3604 3.5116 4.6257 41 1 3.9170 3.0394 5.5599 42 1 3.2960 5.3535 6.2416 43 1 4.9293 5.6859 5.6168 44 1 3.5440 6.6430 5.0399 45 1 1.9405 6.6454 4.3237 46 1 -1.4802 4.3633 3.1931 47 1 -0.0980 2.3343 3.0930 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072857498.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:14 Heat of formation + Delta-G solvation = -36.499313 kcal Electronic energy + Delta-G solvation = -30662.480728 eV Core-core repulsion = 26566.817054 eV Total energy + Delta-G solvation = -4095.663674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.83741 -42.30006 -40.47628 -37.66717 -37.59654 -36.61292 -34.86597 -32.02369 -31.57165 -31.07299 -30.78673 -29.44129 -27.24350 -25.77147 -24.81710 -24.44886 -24.01426 -22.60941 -21.01520 -19.91458 -19.14779 -18.96299 -18.32190 -18.02208 -17.61261 -16.96291 -16.67888 -16.53672 -16.23898 -16.01484 -15.79666 -15.61915 -15.28005 -15.14574 -14.92574 -14.68319 -14.49631 -13.99263 -13.89995 -13.76411 -13.57681 -13.41050 -13.23579 -13.20567 -13.13117 -12.82177 -12.66561 -12.52042 -12.38942 -12.24522 -12.05150 -11.86040 -11.83403 -11.75866 -11.32896 -10.86872 -10.85481 -10.38711 -9.37422 -9.26744 -8.36844 -8.32402 -6.40036 0.20224 0.29491 1.27863 1.32227 1.39615 1.79410 2.25408 2.27301 2.36750 2.66179 2.92409 2.98556 3.40856 3.57773 3.65187 3.73054 3.91805 4.09676 4.11269 4.19753 4.23747 4.27592 4.39668 4.44560 4.45731 4.49064 4.52102 4.65932 4.69822 4.74441 4.80199 4.85226 4.90063 4.90714 4.93503 5.03853 5.04650 5.06823 5.22829 5.41361 5.46455 5.61628 5.66767 5.67533 5.91119 6.01694 6.22490 6.27565 6.61002 6.73049 7.20902 7.43783 8.80278 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.011164 B = 0.004095 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.504535 B = 6835.885026 C = 6900.722164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.095 3.905 3 N -0.597 5.597 4 C 0.229 3.771 5 C -0.528 4.528 6 H 0.031 0.969 7 C 0.014 3.986 8 N -0.944 5.944 9 Si 0.941 3.059 10 H -0.282 1.282 11 H -0.273 1.273 12 H -0.240 1.240 13 C 0.468 3.532 14 O -0.572 6.572 15 C 0.038 3.962 16 N -0.456 5.456 17 C 0.030 3.970 18 C 0.061 3.939 19 N -0.512 5.512 20 C 0.025 3.975 21 C 0.112 3.888 22 C -0.186 4.186 23 C 0.075 3.925 24 F -0.149 7.149 25 C -0.160 4.160 26 C -0.110 4.110 27 C 0.077 3.923 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.043 0.957 34 H 0.010 0.990 35 H 0.267 0.733 36 H 0.134 0.866 37 H 0.140 0.860 38 H 0.043 0.957 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.095 0.905 44 H 0.076 0.924 45 H 0.144 0.856 46 H 0.154 0.846 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.138 -2.771 18.760 21.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.027 4.027 3 N -0.329 5.329 4 C 0.106 3.894 5 C -0.567 4.567 6 H 0.050 0.950 7 C -0.184 4.184 8 N -0.584 5.584 9 Si 0.764 3.236 10 H -0.208 1.208 11 H -0.199 1.199 12 H -0.163 1.163 13 C 0.256 3.744 14 O -0.452 6.452 15 C -0.091 4.091 16 N -0.170 5.170 17 C -0.097 4.097 18 C -0.065 4.065 19 N -0.226 5.226 20 C -0.120 4.120 21 C 0.011 3.989 22 C -0.208 4.208 23 C 0.055 3.945 24 F -0.127 7.127 25 C -0.180 4.180 26 C -0.131 4.131 27 C -0.023 4.023 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.061 0.939 34 H 0.028 0.972 35 H 0.076 0.924 36 H 0.152 0.848 37 H 0.158 0.842 38 H 0.062 0.938 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.113 0.887 44 H 0.094 0.906 45 H 0.162 0.838 46 H 0.172 0.828 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.522 -2.260 18.675 21.554 hybrid contribution 0.071 1.137 -1.253 1.694 sum -10.451 -1.123 17.422 20.347 Atomic orbital electron populations 1.22169 0.93955 1.03725 1.02090 1.21820 0.95655 0.81052 1.04128 1.48115 1.63949 1.15142 1.05661 1.19194 0.94659 0.92642 0.82906 1.21534 0.97010 1.31726 1.06445 0.95019 1.25760 0.96527 0.97143 0.98975 1.70038 1.17249 1.46641 1.24486 0.85819 0.80677 0.78960 0.78118 1.20824 1.19856 1.16328 1.22182 0.77766 0.87181 0.87319 1.90714 1.46958 1.20131 1.87416 1.22728 1.05723 0.97195 0.83483 1.59583 1.04781 1.14059 1.38599 1.22611 0.86817 1.00791 0.99491 1.22371 1.00916 0.85864 0.97353 1.58644 1.09744 1.12664 1.41553 1.22609 1.03586 0.95310 0.90487 1.18487 0.87983 0.91700 1.00708 1.20912 0.92391 0.99109 1.08378 1.17450 0.89091 0.83155 1.04852 1.91438 1.75499 1.51343 1.94462 1.21038 1.01945 0.90838 1.04178 1.20985 0.91577 0.99506 1.01048 1.18762 0.93440 0.88269 1.01871 0.91611 0.93939 0.88638 0.91205 0.88038 0.93893 0.97188 0.92361 0.84782 0.84231 0.93830 0.86943 0.87274 0.91103 0.93337 0.88671 0.90562 0.83838 0.82817 0.82693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 10.24 71.98 0.74 -2.41 16 2 C 0.10 2.51 5.96 86.38 0.51 3.03 16 3 N -0.60 -22.72 2.46 -826.15 -2.03 -24.75 16 4 C 0.23 11.05 4.23 85.63 0.36 11.42 16 5 C -0.53 -30.83 9.94 25.60 0.25 -30.58 16 6 H 0.03 2.05 8.06 -2.91 -0.02 2.03 16 7 C 0.01 0.83 5.47 84.65 0.46 1.30 16 8 N -0.94 -59.78 13.96 21.45 0.30 -59.48 16 9 Si 0.94 45.34 27.47 68.60 1.88 47.22 16 10 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 11 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.24 -10.45 6.54 99.48 0.65 -9.80 16 13 C 0.47 17.47 6.72 87.65 0.59 18.06 16 14 O -0.57 -27.33 12.51 -3.03 -0.04 -27.37 16 15 C 0.04 0.93 4.17 85.56 0.36 1.29 16 16 N -0.46 -12.24 4.84 -698.60 -3.38 -15.62 16 17 C 0.03 0.84 5.42 86.47 0.47 1.31 16 18 C 0.06 1.46 5.69 86.47 0.49 1.95 16 19 N -0.51 -14.51 4.88 -719.22 -3.51 -18.02 16 20 C 0.03 0.50 8.88 127.69 1.13 1.64 16 21 C 0.11 3.51 5.78 38.26 0.22 3.73 16 22 C -0.19 -5.57 9.02 22.50 0.20 -5.36 16 23 C 0.07 2.22 7.29 22.32 0.16 2.38 16 24 F -0.15 -4.35 17.27 44.97 0.78 -3.58 16 25 C -0.16 -4.23 10.02 22.28 0.22 -4.01 16 26 C -0.11 -2.92 8.81 22.46 0.20 -2.72 16 27 C 0.08 2.30 3.96 38.22 0.15 2.45 16 28 H 0.06 1.10 7.42 -2.39 -0.02 1.08 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 2.06 8.07 -2.38 -0.02 2.04 16 32 H 0.10 1.97 6.27 -2.39 -0.01 1.96 16 33 H 0.04 1.94 7.13 -2.39 -0.02 1.92 16 34 H 0.01 0.54 6.85 -2.39 -0.02 0.52 16 35 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 36 H 0.13 2.63 7.06 -2.39 -0.02 2.61 16 37 H 0.14 2.55 5.23 -2.39 -0.01 2.54 16 38 H 0.04 1.73 5.67 -2.38 -0.01 1.71 16 39 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.07 1.45 8.13 -2.38 -0.02 1.43 16 42 H 0.05 0.87 8.13 -2.38 -0.02 0.85 16 43 H 0.09 1.50 8.09 -2.39 -0.02 1.49 16 44 H 0.08 1.51 6.35 -2.39 -0.02 1.49 16 45 H 0.14 3.83 6.10 -2.91 -0.02 3.81 16 46 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 47 H 0.16 3.14 5.97 -2.91 -0.02 3.12 16 Total: -1.00 -80.66 369.20 1.46 -79.20 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.93 Total: 18.93 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 6.53 Total: 3.47 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -8.62 Total: -117.87 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.04 Total: -27.37 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.78 Total: -3.58 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.88 Total: 47.22 kcal Total: -80.66 1.46 -79.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072857498.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.698 kcal (2) G-P(sol) polarization free energy of solvation -80.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds