Wall clock time and date at job start Tue Mar 31 2020 18:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47262 * 2 1 4 4 C 1.53002 * 109.47215 * 120.00126 * 2 1 3 5 5 N 1.46496 * 109.47093 * 174.99895 * 4 2 1 6 6 C 1.46764 * 124.34942 * 90.00124 * 5 4 2 7 7 C 1.54490 * 105.47193 * 197.01656 * 6 5 4 8 8 C 1.54630 * 101.76384 * 334.58189 * 7 6 5 9 9 C 1.34425 * 124.35181 * 269.70286 * 5 4 2 10 10 O 1.21284 * 124.93899 * 359.57266 * 9 5 4 11 11 N 1.46503 * 109.47036 * 240.00136 * 2 1 3 12 12 C 1.34775 * 120.00069 * 84.99916 * 11 2 1 13 13 O 1.21594 * 119.99767 * 359.97438 * 12 11 2 14 14 N 1.34777 * 120.00065 * 179.97438 * 12 11 2 15 15 C 1.40192 * 120.00049 * 180.02562 * 14 12 11 16 16 C 1.40402 * 125.97032 * 359.97438 * 15 14 12 17 17 C 1.35245 * 107.86627 * 179.70432 * 16 15 14 18 18 N 1.34964 * 107.85965 * 0.26430 * 17 16 15 19 19 C 1.46495 * 125.98003 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47002 * 125.00169 * 19 18 17 21 21 H 1.07998 * 120.00063 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99758 * 180.02562 * 20 19 18 23 23 N 1.31520 * 119.99692 * 180.02562 * 22 20 19 24 24 Si 1.86789 * 120.00335 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47384 * 89.99987 * 24 22 20 26 26 H 1.48504 * 109.47268 * 209.99904 * 24 22 20 27 27 H 1.48501 * 109.47030 * 329.99710 * 24 22 20 28 28 N 1.31206 * 125.97560 * 180.17721 * 15 14 12 29 29 H 1.09001 * 109.46524 * 299.99708 * 1 2 3 30 30 H 1.08993 * 109.46948 * 59.99784 * 1 2 3 31 31 H 1.09000 * 109.47262 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47163 * 294.99931 * 4 2 1 33 33 H 1.08996 * 109.46948 * 54.99792 * 4 2 1 34 34 H 1.08998 * 110.24711 * 316.01125 * 6 5 4 35 35 H 1.08996 * 110.24634 * 77.93264 * 6 5 4 36 36 H 1.08994 * 110.96805 * 92.70609 * 7 6 5 37 37 H 1.09004 * 110.96761 * 216.46467 * 7 6 5 38 38 H 1.08997 * 110.48063 * 143.47695 * 8 7 6 39 39 H 1.09003 * 110.48353 * 265.98842 * 8 7 6 40 40 H 0.97005 * 119.99875 * 265.00221 * 11 2 1 41 41 H 0.97005 * 119.99878 * 0.02562 * 14 12 11 42 42 H 1.08002 * 126.07048 * 359.97438 * 16 15 14 43 43 H 1.08000 * 126.07435 * 180.26799 * 17 16 15 44 44 H 1.08994 * 109.47532 * 245.00383 * 19 18 17 45 45 H 1.08999 * 109.47116 * 5.01096 * 19 18 17 46 46 H 0.96997 * 120.00244 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.4249 0.1771 1.7304 7 6 5.7896 -0.1233 1.0715 8 6 5.6567 -1.6286 0.7435 9 6 4.1648 -1.8571 0.6403 10 8 3.6442 -2.8278 0.1327 11 7 2.0183 -0.6906 -1.1962 12 6 2.1470 -0.0182 -2.3572 13 8 1.8574 1.1614 -2.4118 14 7 2.5968 -0.6534 -3.4575 15 6 2.7311 0.0461 -4.6650 16 6 2.4348 1.4032 -4.8693 17 6 2.7031 1.6965 -6.1620 18 7 3.1467 0.5700 -6.7585 19 6 3.5506 0.4405 -8.1607 20 6 4.9497 -0.1150 -8.2311 21 1 5.4844 -0.3486 -7.3223 22 6 5.5472 -0.3250 -9.4559 23 7 6.7681 -0.8103 -9.5174 24 14 4.6228 0.0796 -11.0278 25 1 4.8961 1.4871 -11.4145 26 1 5.0719 -0.8282 -12.1138 27 1 3.1655 -0.0984 -10.8048 28 7 3.1523 -0.4539 -5.8026 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7517 -0.1583 2.1370 33 1 1.6054 -1.7198 1.2951 34 1 4.0905 1.1799 1.4648 35 1 4.4978 0.0788 2.8135 36 1 5.9216 0.4638 0.1627 37 1 6.6074 0.0530 1.7702 38 1 6.1468 -1.8574 -0.2028 39 1 6.0788 -2.2327 1.5467 40 1 2.2490 -1.6318 -1.1527 41 1 2.8275 -1.5946 -3.4139 42 1 2.0630 2.0919 -4.1250 43 1 2.5836 2.6608 -6.6333 44 1 2.8658 -0.2335 -8.6754 45 1 3.5242 1.4198 -8.6384 46 1 7.1883 -0.9584 -10.3789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172370931.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:56 Heat of formation + Delta-G solvation = 28.393258 kcal Electronic energy + Delta-G solvation = -28950.657933 eV Core-core repulsion = 24877.728174 eV Total energy + Delta-G solvation = -4072.929759 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.97987 -40.56925 -39.49683 -36.86712 -36.19947 -34.58185 -33.31614 -32.67677 -31.37454 -30.40540 -29.28593 -27.90817 -27.02420 -26.61733 -23.28773 -22.38491 -22.15511 -21.08151 -20.30473 -19.95866 -19.59544 -18.02829 -17.19942 -17.13429 -16.95145 -16.48621 -15.93913 -15.61788 -15.31153 -14.92516 -14.50306 -14.31394 -14.14057 -14.00048 -13.77841 -13.57980 -13.37346 -13.06975 -12.93738 -12.79630 -12.50039 -12.42984 -12.26413 -12.14540 -12.03411 -11.82076 -11.49060 -11.32616 -11.11698 -10.74462 -10.59627 -10.12366 -10.02047 -9.95328 -9.68588 -9.47954 -9.27835 -9.01000 -8.73433 -8.10563 -7.41108 -6.20385 -4.22249 2.25284 2.41264 2.61911 2.68352 3.12838 3.17760 3.25266 3.25828 3.58770 3.86904 3.99888 4.12034 4.25823 4.34175 4.39058 4.49498 4.64469 4.75157 4.93434 4.99390 5.07589 5.08862 5.16004 5.27073 5.38502 5.41308 5.48065 5.49804 5.64820 5.69978 5.76320 5.93820 6.12490 6.25642 6.39072 6.41391 6.52265 6.63946 6.72746 6.78784 7.06101 7.32312 7.50791 7.83512 7.88024 7.99879 8.37991 8.66317 8.67186 8.90087 9.34833 10.92432 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015909 B = 0.002585 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.566011 B =10828.282004 C =11871.008946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.145 3.855 3 H 0.092 0.908 4 C 0.116 3.884 5 N -0.617 5.617 6 C 0.101 3.899 7 C -0.133 4.133 8 C -0.157 4.157 9 C 0.520 3.480 10 O -0.534 6.534 11 N -0.738 5.738 12 C 0.715 3.285 13 O -0.572 6.572 14 N -0.644 5.644 15 C 0.281 3.719 16 C -0.282 4.282 17 C 0.049 3.951 18 N -0.321 5.321 19 C 0.233 3.767 20 C -0.533 4.533 21 H 0.085 0.915 22 C 0.076 3.924 23 N -0.889 5.889 24 Si 0.873 3.127 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.264 1.264 28 N -0.300 5.300 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.403 0.597 41 H 0.408 0.592 42 H 0.162 0.838 43 H 0.168 0.832 44 H 0.041 0.959 45 H 0.048 0.952 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.923 2.987 26.236 27.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.039 3.961 3 H 0.110 0.890 4 C -0.007 4.007 5 N -0.351 5.351 6 C -0.021 4.021 7 C -0.171 4.171 8 C -0.197 4.197 9 C 0.309 3.691 10 O -0.410 6.410 11 N -0.396 5.396 12 C 0.415 3.585 13 O -0.448 6.448 14 N -0.294 5.294 15 C 0.026 3.974 16 C -0.314 4.314 17 C -0.100 4.100 18 N -0.103 5.103 19 C 0.114 3.886 20 C -0.571 4.571 21 H 0.103 0.897 22 C -0.128 4.128 23 N -0.526 5.526 24 Si 0.699 3.301 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.189 1.189 28 N -0.131 5.131 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.240 0.760 41 H 0.243 0.757 42 H 0.180 0.820 43 H 0.185 0.815 44 H 0.059 0.941 45 H 0.066 0.934 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.929 2.447 25.091 26.428 hybrid contribution -0.303 0.009 -0.491 0.577 sum -8.232 2.456 24.600 26.057 Atomic orbital electron populations 1.22170 0.94552 1.02489 1.03098 1.21236 0.94232 0.97625 0.83043 0.88987 1.21805 0.78667 1.02599 0.97631 1.48240 1.05936 1.22272 1.58681 1.22124 0.89165 0.92691 0.98161 1.22606 0.96766 0.95394 1.02329 1.22342 0.94067 0.97914 1.05412 1.20970 0.90094 0.81631 0.76418 1.90704 1.74488 1.30844 1.45013 1.45225 1.71742 1.14367 1.08316 1.15621 0.78232 0.84871 0.79815 1.90836 1.56183 1.13907 1.83919 1.41433 1.68212 1.13482 1.06259 1.18801 1.01174 0.91518 0.85909 1.21524 1.17470 0.95516 0.96848 1.22538 1.00505 0.93027 0.93922 1.48579 1.47112 1.04817 1.09798 1.20021 0.97863 0.98356 0.72410 1.21124 0.96633 1.43907 0.95461 0.89656 1.24836 0.94831 0.94428 0.98701 1.69876 1.13167 1.43841 1.25712 0.86903 0.80703 0.78964 0.83517 1.19730 1.20566 1.18853 1.77403 1.26509 1.13039 0.96148 0.91481 0.91179 0.92258 0.88521 0.89260 0.90110 0.90928 0.89641 0.89051 0.87677 0.87839 0.76036 0.75737 0.82042 0.81501 0.94108 0.93381 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.48 37.16 0.35 -0.95 16 2 C 0.15 1.30 2.88 -67.93 -0.20 1.10 16 3 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 4 C 0.12 0.76 5.54 -4.04 -0.02 0.74 16 5 N -0.62 -4.68 2.80 -172.41 -0.48 -5.16 16 6 C 0.10 0.52 7.35 -3.12 -0.02 0.50 16 7 C -0.13 -0.72 7.18 -25.09 -0.18 -0.90 16 8 C -0.16 -1.15 6.86 -26.74 -0.18 -1.33 16 9 C 0.52 5.22 7.30 -10.86 -0.08 5.14 16 10 O -0.53 -7.15 15.89 5.55 0.09 -7.07 16 11 N -0.74 -8.77 4.53 -58.67 -0.27 -9.04 16 12 C 0.72 11.29 8.50 -86.92 -0.74 10.55 16 13 O -0.57 -10.37 13.13 5.28 0.07 -10.30 16 14 N -0.64 -11.07 5.45 -15.51 -0.08 -11.16 16 15 C 0.28 5.90 8.11 -154.37 -1.25 4.65 16 16 C -0.28 -5.70 9.61 -39.83 -0.38 -6.09 16 17 C 0.05 0.98 11.44 -17.24 -0.20 0.78 16 18 N -0.32 -7.50 3.67 -62.57 -0.23 -7.73 16 19 C 0.23 5.64 5.33 -5.19 -0.03 5.61 16 20 C -0.53 -15.32 9.79 -34.44 -0.34 -15.66 16 21 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 22 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 23 N -0.89 -26.95 13.96 55.43 0.77 -26.17 16 24 Si 0.87 20.42 27.47 -169.99 -4.67 15.75 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 28 N -0.30 -7.17 12.42 31.44 0.39 -6.78 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.63 7.92 -51.93 -0.41 0.22 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.40 4.81 6.41 -40.82 -0.26 4.55 16 41 H 0.41 6.28 8.84 -40.82 -0.36 5.92 16 42 H 0.16 3.18 5.91 -52.49 -0.31 2.87 16 43 H 0.17 2.62 8.06 -52.49 -0.42 2.20 16 44 H 0.04 0.99 7.20 -51.93 -0.37 0.61 16 45 H 0.05 1.05 7.49 -51.93 -0.39 0.67 16 46 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 382.09 15.07 5.76 5.76 Total: -1.00 -36.58 382.09 -8.76 -45.33 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -6.74 Total: 10.37 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -3.36 Total: 6.20 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: 0.10 Total: -66.04 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: 0.16 Total: -17.37 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.67 Total: 15.75 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.58 -8.76 -45.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172370931.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.724 kcal (2) G-P(sol) polarization free energy of solvation -36.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds