Wall clock time and date at job start Tue Mar 31 2020 18:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47262 * 2 1 4 4 C 1.53002 * 109.47215 * 120.00126 * 2 1 3 5 5 N 1.46496 * 109.47093 * 174.99895 * 4 2 1 6 6 C 1.46764 * 124.34942 * 90.00124 * 5 4 2 7 7 C 1.54490 * 105.47193 * 197.01656 * 6 5 4 8 8 C 1.54630 * 101.76384 * 334.58189 * 7 6 5 9 9 C 1.34425 * 124.35181 * 269.70286 * 5 4 2 10 10 O 1.21284 * 124.93899 * 359.57266 * 9 5 4 11 11 N 1.46503 * 109.47036 * 240.00136 * 2 1 3 12 12 C 1.34775 * 120.00069 * 84.99916 * 11 2 1 13 13 O 1.21594 * 119.99767 * 359.97438 * 12 11 2 14 14 N 1.34777 * 120.00065 * 179.97438 * 12 11 2 15 15 C 1.40192 * 120.00049 * 180.02562 * 14 12 11 16 16 C 1.40402 * 125.97032 * 359.97438 * 15 14 12 17 17 C 1.35245 * 107.86627 * 179.70432 * 16 15 14 18 18 N 1.34964 * 107.85965 * 0.26430 * 17 16 15 19 19 C 1.46495 * 125.98003 * 179.97438 * 18 17 16 20 20 C 1.50703 * 109.47002 * 125.00169 * 19 18 17 21 21 H 1.07998 * 120.00063 * 0.02562 * 20 19 18 22 22 C 1.37881 * 119.99758 * 180.02562 * 20 19 18 23 23 N 1.31520 * 119.99692 * 180.02562 * 22 20 19 24 24 Si 1.86789 * 120.00335 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47384 * 89.99987 * 24 22 20 26 26 H 1.48504 * 109.47268 * 209.99904 * 24 22 20 27 27 H 1.48501 * 109.47030 * 329.99710 * 24 22 20 28 28 N 1.31206 * 125.97560 * 180.17721 * 15 14 12 29 29 H 1.09001 * 109.46524 * 299.99708 * 1 2 3 30 30 H 1.08993 * 109.46948 * 59.99784 * 1 2 3 31 31 H 1.09000 * 109.47262 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47163 * 294.99931 * 4 2 1 33 33 H 1.08996 * 109.46948 * 54.99792 * 4 2 1 34 34 H 1.08998 * 110.24711 * 316.01125 * 6 5 4 35 35 H 1.08996 * 110.24634 * 77.93264 * 6 5 4 36 36 H 1.08994 * 110.96805 * 92.70609 * 7 6 5 37 37 H 1.09004 * 110.96761 * 216.46467 * 7 6 5 38 38 H 1.08997 * 110.48063 * 143.47695 * 8 7 6 39 39 H 1.09003 * 110.48353 * 265.98842 * 8 7 6 40 40 H 0.97005 * 119.99875 * 265.00221 * 11 2 1 41 41 H 0.97005 * 119.99878 * 0.02562 * 14 12 11 42 42 H 1.08002 * 126.07048 * 359.97438 * 16 15 14 43 43 H 1.08000 * 126.07435 * 180.26799 * 17 16 15 44 44 H 1.08994 * 109.47532 * 245.00383 * 19 18 17 45 45 H 1.08999 * 109.47116 * 5.01096 * 19 18 17 46 46 H 0.96997 * 120.00244 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.4249 0.1771 1.7304 7 6 5.7896 -0.1233 1.0715 8 6 5.6567 -1.6286 0.7435 9 6 4.1648 -1.8571 0.6403 10 8 3.6442 -2.8278 0.1327 11 7 2.0183 -0.6906 -1.1962 12 6 2.1470 -0.0182 -2.3572 13 8 1.8574 1.1614 -2.4118 14 7 2.5968 -0.6534 -3.4575 15 6 2.7311 0.0461 -4.6650 16 6 2.4348 1.4032 -4.8693 17 6 2.7031 1.6965 -6.1620 18 7 3.1467 0.5700 -6.7585 19 6 3.5506 0.4405 -8.1607 20 6 4.9497 -0.1150 -8.2311 21 1 5.4844 -0.3486 -7.3223 22 6 5.5472 -0.3250 -9.4559 23 7 6.7681 -0.8103 -9.5174 24 14 4.6228 0.0796 -11.0278 25 1 4.8961 1.4871 -11.4145 26 1 5.0719 -0.8282 -12.1138 27 1 3.1655 -0.0984 -10.8048 28 7 3.1523 -0.4539 -5.8026 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7517 -0.1583 2.1370 33 1 1.6054 -1.7198 1.2951 34 1 4.0905 1.1799 1.4648 35 1 4.4978 0.0788 2.8135 36 1 5.9216 0.4638 0.1627 37 1 6.6074 0.0530 1.7702 38 1 6.1468 -1.8574 -0.2028 39 1 6.0788 -2.2327 1.5467 40 1 2.2490 -1.6318 -1.1527 41 1 2.8275 -1.5946 -3.4139 42 1 2.0630 2.0919 -4.1250 43 1 2.5836 2.6608 -6.6333 44 1 2.8658 -0.2335 -8.6754 45 1 3.5242 1.4198 -8.6384 46 1 7.1883 -0.9584 -10.3789 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172370931.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:55 Heat of formation + Delta-G solvation = 1.940593 kcal Electronic energy + Delta-G solvation = -28951.805007 eV Core-core repulsion = 24877.728174 eV Total energy + Delta-G solvation = -4074.076833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.28670 -41.57321 -40.75640 -37.70262 -37.06247 -36.08579 -35.21767 -33.68036 -32.90780 -31.45910 -30.90239 -28.89625 -28.45810 -27.22469 -24.88486 -23.67040 -22.88200 -22.29400 -21.63294 -21.33495 -20.45729 -19.29394 -19.08720 -18.29135 -17.79805 -17.68372 -17.08608 -16.75833 -16.48410 -16.17471 -16.11964 -15.50156 -15.35458 -14.83471 -14.80433 -14.66390 -14.54229 -14.37903 -14.03526 -13.89432 -13.82465 -13.58982 -13.35675 -13.04123 -12.96462 -12.77266 -12.53090 -12.34766 -12.30377 -12.17104 -11.86120 -11.83678 -11.62119 -11.48101 -11.13631 -10.87083 -10.85778 -10.28835 -9.76642 -9.68498 -9.05583 -8.37824 -6.48166 1.02968 1.12281 1.36145 1.39919 1.49486 1.50792 1.67694 2.00162 2.14320 2.28929 2.38193 2.94545 3.09350 3.43721 3.63105 3.73836 3.91671 4.02693 4.09103 4.15054 4.19633 4.30226 4.45136 4.59280 4.62424 4.68768 4.71425 4.73520 4.79328 4.83288 4.89229 4.92351 4.98473 5.04821 5.10783 5.19218 5.23964 5.29396 5.47481 5.62303 5.75762 5.90421 6.01552 6.09011 6.41622 6.56711 6.66721 7.07700 7.12496 7.14875 7.38647 8.79497 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015909 B = 0.002585 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.566011 B =10828.282004 C =11871.008946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.140 3.860 3 H 0.084 0.916 4 C 0.118 3.882 5 N -0.615 5.615 6 C 0.099 3.901 7 C -0.128 4.128 8 C -0.159 4.159 9 C 0.506 3.494 10 O -0.578 6.578 11 N -0.724 5.724 12 C 0.714 3.286 13 O -0.595 6.595 14 N -0.644 5.644 15 C 0.284 3.716 16 C -0.291 4.291 17 C 0.062 3.938 18 N -0.345 5.345 19 C 0.240 3.760 20 C -0.548 4.548 21 H 0.024 0.976 22 C 0.014 3.986 23 N -0.943 5.943 24 Si 0.957 3.043 25 H -0.251 1.251 26 H -0.281 1.281 27 H -0.240 1.240 28 N -0.353 5.353 29 H 0.098 0.902 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.137 0.863 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.066 0.934 37 H 0.119 0.881 38 H 0.088 0.912 39 H 0.123 0.877 40 H 0.404 0.596 41 H 0.413 0.587 42 H 0.169 0.831 43 H 0.213 0.787 44 H 0.044 0.956 45 H 0.084 0.916 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.637 4.954 27.315 29.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.035 3.965 3 H 0.102 0.898 4 C -0.004 4.004 5 N -0.347 5.347 6 C -0.023 4.023 7 C -0.165 4.165 8 C -0.199 4.199 9 C 0.295 3.705 10 O -0.459 6.459 11 N -0.381 5.381 12 C 0.413 3.587 13 O -0.473 6.473 14 N -0.295 5.295 15 C 0.028 3.972 16 C -0.322 4.322 17 C -0.086 4.086 18 N -0.127 5.127 19 C 0.120 3.880 20 C -0.586 4.586 21 H 0.043 0.957 22 C -0.185 4.185 23 N -0.582 5.582 24 Si 0.777 3.223 25 H -0.175 1.175 26 H -0.206 1.206 27 H -0.163 1.163 28 N -0.184 5.184 29 H 0.117 0.883 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.155 0.845 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.121 0.879 36 H 0.085 0.915 37 H 0.137 0.863 38 H 0.107 0.893 39 H 0.141 0.859 40 H 0.241 0.759 41 H 0.249 0.751 42 H 0.186 0.814 43 H 0.230 0.770 44 H 0.062 0.938 45 H 0.102 0.898 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.662 4.439 26.264 28.335 hybrid contribution 0.276 -0.613 -0.615 0.911 sum -9.386 3.826 25.649 27.579 Atomic orbital electron populations 1.22111 0.93457 1.02814 1.03244 1.21542 0.95112 0.97221 0.82634 0.89805 1.21926 0.78077 1.02761 0.97645 1.48398 1.06699 1.21979 1.57620 1.22361 0.88079 0.92137 0.99692 1.22623 0.98234 0.93408 1.02277 1.22384 0.92360 0.99761 1.05359 1.21480 0.91370 0.81592 0.76059 1.90670 1.75442 1.32693 1.47067 1.45331 1.70520 1.14323 1.07925 1.15773 0.77973 0.84727 0.80218 1.90801 1.57267 1.14875 1.84327 1.41548 1.68405 1.13747 1.05782 1.19150 0.99522 0.92264 0.86269 1.21711 1.17926 0.95208 0.97381 1.23262 0.98086 0.93572 0.93653 1.48494 1.48748 1.05799 1.09623 1.19886 0.94765 0.99716 0.73634 1.21240 0.98886 1.44796 0.93665 0.95710 1.25942 0.95688 0.93691 1.03170 1.70055 1.15538 1.45403 1.27162 0.85595 0.80039 0.79528 0.77090 1.17514 1.20629 1.16329 1.77319 1.28950 1.14695 0.97455 0.88298 0.94000 0.91837 0.84490 0.89613 0.89508 0.87911 0.91527 0.86287 0.89317 0.85916 0.75896 0.75123 0.81350 0.77025 0.93805 0.89844 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.48 71.98 0.68 -1.58 16 2 C 0.14 2.33 2.88 44.99 0.13 2.46 16 3 H 0.08 1.58 7.58 -2.39 -0.02 1.57 16 4 C 0.12 1.29 5.54 86.38 0.48 1.77 16 5 N -0.61 -8.34 2.80 -817.97 -2.29 -10.63 16 6 C 0.10 0.76 7.35 86.84 0.64 1.40 16 7 C -0.13 -1.20 7.18 31.66 0.23 -0.98 16 8 C -0.16 -2.27 6.86 30.59 0.21 -2.06 16 9 C 0.51 10.08 7.30 87.90 0.64 10.72 16 10 O -0.58 -16.05 15.89 -3.04 -0.05 -16.09 16 11 N -0.72 -17.29 4.53 -457.80 -2.07 -19.36 16 12 C 0.71 22.90 8.50 179.05 1.52 24.43 16 13 O -0.59 -21.62 13.13 -4.01 -0.05 -21.67 16 14 N -0.64 -22.97 5.45 -321.23 -1.75 -24.72 16 15 C 0.28 12.22 8.11 133.32 1.08 13.30 16 16 C -0.29 -11.68 9.61 22.11 0.21 -11.46 16 17 C 0.06 2.39 11.44 83.52 0.96 3.34 16 18 N -0.34 -16.10 3.67 -351.86 -1.29 -17.39 16 19 C 0.24 11.43 5.33 85.63 0.46 11.89 16 20 C -0.55 -32.43 9.79 25.60 0.25 -32.18 16 21 H 0.02 1.71 8.06 -2.91 -0.02 1.69 16 22 C 0.01 0.79 5.47 84.65 0.46 1.26 16 23 N -0.94 -59.03 13.96 21.45 0.30 -58.73 16 24 Si 0.96 41.43 27.47 68.60 1.88 43.32 16 25 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 26 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 27 H -0.24 -9.43 6.54 99.48 0.65 -8.77 16 28 N -0.35 -17.46 12.42 -54.44 -0.68 -18.13 16 29 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 32 H 0.14 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.09 1.07 7.92 -2.39 -0.02 1.05 16 34 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.10 0.25 8.14 -2.39 -0.02 0.24 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.12 0.48 8.14 -2.38 -0.02 0.46 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.40 9.90 6.41 -92.70 -0.59 9.31 16 41 H 0.41 13.49 8.84 -92.70 -0.82 12.67 16 42 H 0.17 6.53 5.91 -2.91 -0.02 6.51 16 43 H 0.21 5.90 8.06 -2.91 -0.02 5.88 16 44 H 0.04 2.06 7.20 -2.39 -0.02 2.04 16 45 H 0.08 3.39 7.49 -2.39 -0.02 3.37 16 46 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -85.33 382.09 1.50 -83.83 By element: Atomic # 1 Polarization: 37.72 SS G_CDS: -0.45 Total: 37.27 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: 7.95 Total: 22.32 kcal Atomic # 7 Polarization: -141.19 SS G_CDS: -7.78 Total: -148.97 kcal Atomic # 8 Polarization: -37.67 SS G_CDS: -0.10 Total: -37.77 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 1.88 Total: 43.32 kcal Total: -85.33 1.50 -83.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172370931.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.768 kcal (2) G-P(sol) polarization free energy of solvation -85.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds