Wall clock time and date at job start Tue Mar 31 2020 18:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46839 * 2 1 4 4 C 1.50696 * 109.47046 * 239.99876 * 2 1 3 5 5 H 1.08000 * 120.00459 * 245.50134 * 4 2 1 6 6 C 1.37884 * 119.99947 * 65.50870 * 4 2 1 7 7 N 1.31512 * 119.99896 * 9.67206 * 6 4 2 8 8 Si 1.86795 * 120.00146 * 189.67992 * 6 4 2 9 9 H 1.48492 * 109.47588 * 84.99005 * 8 6 4 10 10 H 1.48497 * 109.46999 * 204.99509 * 8 6 4 11 11 H 1.48509 * 109.46908 * 324.98785 * 8 6 4 12 12 N 1.46901 * 109.47263 * 120.00135 * 2 1 3 13 13 C 1.46906 * 110.99959 * 58.94929 * 12 2 1 14 14 C 1.46903 * 110.99658 * 295.00369 * 12 2 1 15 15 C 1.53011 * 109.46813 * 189.99858 * 14 12 2 16 16 N 1.46498 * 109.47080 * 179.97438 * 15 14 12 17 17 C 1.34730 * 126.50271 * 264.69373 * 16 15 14 18 18 N 1.30873 * 109.71234 * 179.82125 * 17 16 15 19 19 C 1.33551 * 109.80083 * 0.44857 * 18 17 16 20 20 C 1.38051 * 126.50579 * 84.99867 * 16 15 14 21 21 C 1.41157 * 134.58860 * 0.02562 * 20 16 15 22 22 O 1.21788 * 120.38885 * 0.02562 * 21 20 16 23 23 N 1.34935 * 119.22111 * 179.97438 * 21 20 16 24 24 C 1.46500 * 119.50228 * 179.97438 * 23 21 20 25 25 C 1.34414 * 120.99206 * 359.97438 * 23 21 20 26 26 O 1.21603 * 119.16387 * 179.97438 * 25 23 21 27 27 N 1.34638 * 121.66760 * 0.02562 * 25 23 21 28 28 C 1.46494 * 119.95029 * 179.97438 * 27 25 23 29 29 H 1.08996 * 109.47128 * 61.15032 * 1 2 3 30 30 H 1.09007 * 109.47005 * 181.14784 * 1 2 3 31 31 H 1.08998 * 109.47225 * 301.14490 * 1 2 3 32 32 H 0.96995 * 120.00113 * 180.02562 * 7 6 4 33 33 H 1.09005 * 109.46649 * 60.00518 * 13 12 2 34 34 H 1.08995 * 109.46964 * 179.97438 * 13 12 2 35 35 H 1.08993 * 109.47694 * 300.00588 * 13 12 2 36 36 H 1.09003 * 109.47019 * 309.99491 * 14 12 2 37 37 H 1.08995 * 109.47678 * 70.00021 * 14 12 2 38 38 H 1.08993 * 109.46860 * 300.00188 * 15 14 12 39 39 H 1.08995 * 109.46865 * 59.99665 * 15 14 12 40 40 H 1.08002 * 125.14863 * 359.96254 * 17 16 15 41 41 H 1.08995 * 109.47712 * 89.99356 * 24 23 21 42 42 H 1.08997 * 109.47058 * 210.00162 * 24 23 21 43 43 H 1.09008 * 109.46687 * 329.99121 * 24 23 21 44 44 H 1.09006 * 109.47116 * 0.02562 * 28 27 25 45 45 H 1.08999 * 109.47355 * 119.99589 * 28 27 25 46 46 H 1.08999 * 109.47344 * 240.00030 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5780 -1.6374 -1.1339 6 6 1.7954 -0.1768 -2.4796 7 7 1.3031 1.0373 -2.5934 8 14 2.1735 -1.1786 -4.0102 9 1 1.0192 -2.0586 -4.3235 10 1 2.4221 -0.2627 -5.1523 11 1 3.3801 -2.0109 -3.7715 12 7 2.0197 -0.6925 1.1994 13 6 1.5283 -2.0762 1.2460 14 6 1.6487 0.0391 2.4180 15 6 2.3789 -0.5663 3.6186 16 7 2.0094 0.1637 4.8338 17 6 2.6894 1.1825 5.3948 18 7 2.0634 1.5931 6.4683 19 6 0.9630 0.8605 6.6583 20 6 0.9013 -0.0657 5.6247 21 6 -0.1754 -0.9774 5.5815 22 8 -0.2511 -1.7994 4.6861 23 7 -1.1193 -0.9281 6.5445 24 6 -2.2398 -1.8711 6.5054 25 6 -1.0469 -0.0269 7.5392 26 8 -1.9161 -0.0118 8.3895 27 7 -0.0370 0.8600 7.6173 28 6 0.0044 1.8263 8.7176 29 1 -0.3633 0.4958 -0.9001 30 1 -0.3633 -1.0275 0.0206 31 1 -0.3633 0.5315 0.8795 32 1 1.1361 1.4126 -3.4721 33 1 1.8763 -2.6151 0.3647 34 1 1.9060 -2.5658 2.1435 35 1 0.4385 -2.0743 1.2639 36 1 1.9297 1.0870 2.3125 37 1 0.5722 -0.0346 2.5726 38 1 2.0979 -1.6141 3.7241 39 1 3.4553 -0.4926 3.4641 40 1 3.6106 1.5991 5.0148 41 1 -1.9766 -2.7716 7.0601 42 1 -3.1185 -1.4102 6.9566 43 1 -2.4583 -2.1329 5.4700 44 1 -0.8582 1.6749 9.3667 45 1 0.9200 1.6842 9.2917 46 1 -0.0178 2.8383 8.3134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182458522.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:13 Heat of formation + Delta-G solvation = 41.627189 kcal Electronic energy + Delta-G solvation = -29954.958615 eV Core-core repulsion = 25882.602722 eV Total energy + Delta-G solvation = -4072.355893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.22931 -41.30515 -39.24484 -37.68465 -36.56094 -35.48168 -34.27673 -32.63649 -31.02948 -29.65548 -28.07459 -27.89221 -26.95701 -25.55421 -25.19504 -24.02659 -23.45912 -22.29253 -21.25971 -19.55971 -19.31418 -18.53728 -17.53291 -17.36505 -16.32707 -16.27644 -15.93785 -15.55793 -15.48705 -15.08045 -15.03328 -14.64741 -14.49404 -14.27838 -13.81351 -13.61019 -13.39979 -13.12877 -12.99096 -12.65953 -12.58000 -12.27306 -12.20977 -11.66808 -11.40450 -11.13557 -11.02061 -10.98030 -10.82374 -10.75902 -10.68578 -10.43831 -10.29095 -10.17659 -10.10102 -9.91394 -9.66478 -9.02807 -8.40853 -8.34050 -7.36156 -6.09917 -4.09861 0.73793 1.46519 1.75425 2.33532 2.43593 2.66312 3.24383 3.27921 3.34622 3.37004 3.79656 4.20924 4.34451 4.41541 4.67568 4.89872 4.90527 5.03272 5.09481 5.13535 5.15825 5.18516 5.26531 5.33313 5.44022 5.44315 5.46606 5.54099 5.81381 5.96928 6.05423 6.12916 6.24934 6.37169 6.54967 6.68621 6.69770 6.79281 6.95700 6.97012 7.25466 7.31294 7.33233 7.49813 7.70793 7.74943 7.97956 8.19356 8.46865 8.94503 9.53723 11.00019 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020665 B = 0.002812 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.615943 B = 9954.911660 C =10565.140531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.212 3.788 3 H 0.047 0.953 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.529 5.529 13 C 0.030 3.970 14 C 0.044 3.956 15 C 0.101 3.899 16 N -0.398 5.398 17 C 0.267 3.733 18 N -0.501 5.501 19 C 0.307 3.693 20 C -0.148 4.148 21 C 0.590 3.410 22 O -0.500 6.500 23 N -0.554 5.554 24 C 0.085 3.915 25 C 0.710 3.290 26 O -0.544 6.544 27 N -0.511 5.511 28 C 0.089 3.911 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.010 0.990 32 H 0.261 0.739 33 H 0.075 0.925 34 H 0.043 0.957 35 H 0.023 0.977 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.230 0.770 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.077 0.923 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.656 -0.602 20.848 20.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.106 3.894 3 H 0.065 0.935 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.253 5.253 13 C -0.118 4.118 14 C -0.085 4.085 15 C -0.020 4.020 16 N -0.078 5.078 17 C -0.017 4.017 18 N -0.225 5.225 19 C 0.075 3.925 20 C -0.266 4.266 21 C 0.384 3.616 22 O -0.375 6.375 23 N -0.298 5.298 24 C -0.056 4.056 25 C 0.412 3.588 26 O -0.417 6.417 27 N -0.239 5.239 28 C -0.053 4.053 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.091 0.909 37 H 0.055 0.945 38 H 0.122 0.878 39 H 0.129 0.871 40 H 0.246 0.754 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.118 0.882 45 H 0.096 0.904 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.492 -0.420 21.024 21.034 hybrid contribution -0.905 -0.889 -1.442 1.920 sum -1.397 -1.308 19.582 19.675 Atomic orbital electron populations 1.22354 1.01168 0.99224 0.99823 1.19335 0.89342 0.95041 0.85647 0.93542 1.21044 1.35414 1.08256 0.89634 0.91794 1.24921 0.95371 0.94672 0.99023 1.69958 1.45225 1.13902 1.23889 0.86585 0.78713 0.80049 0.82523 1.20674 1.21349 1.19855 1.62402 1.59325 1.02165 1.01383 1.22315 0.97781 0.90739 1.00977 1.22253 0.97545 0.98515 0.90212 1.22394 1.02097 0.97081 0.80418 1.45049 1.16286 1.26133 1.20357 1.25346 0.98985 0.87539 0.89783 1.69674 1.06228 1.27937 1.18654 1.18079 0.91108 0.94125 0.89217 1.18795 0.98654 1.08481 1.00660 1.15504 0.81016 0.83519 0.81569 1.90936 1.75766 1.37554 1.33216 1.45802 1.26164 1.33532 1.24324 1.21931 0.87188 0.91466 1.04966 1.15423 0.81918 0.79030 0.82392 1.90997 1.38097 1.72837 1.39797 1.43743 1.20361 1.34047 1.25768 1.21958 1.04616 0.90869 0.87817 0.91082 0.94638 0.97139 0.92899 0.90590 0.93857 0.95834 0.90885 0.94536 0.87840 0.87060 0.75355 0.90729 0.88742 0.88668 0.88172 0.90448 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.93 8.36 37.16 0.31 -3.62 16 2 C 0.21 5.11 2.20 -68.86 -0.15 4.96 16 3 H 0.05 1.24 7.98 -51.93 -0.41 0.82 16 4 C -0.51 -13.32 7.97 -34.44 -0.27 -13.59 16 5 H 0.06 1.68 6.56 -52.49 -0.34 1.33 16 6 C 0.06 1.67 5.19 -17.82 -0.09 1.58 16 7 N -0.89 -25.00 12.17 55.43 0.67 -24.33 16 8 Si 0.89 20.85 29.55 -169.99 -5.02 15.83 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 12 N -0.53 -10.53 4.74 -236.27 -1.12 -11.65 16 13 C 0.03 0.57 8.70 60.07 0.52 1.09 16 14 C 0.04 0.74 4.72 -3.82 -0.02 0.72 16 15 C 0.10 1.30 5.80 -4.04 -0.02 1.28 16 16 N -0.40 -4.87 2.78 -115.75 -0.32 -5.19 16 17 C 0.27 2.65 12.49 -90.35 -1.13 1.52 16 18 N -0.50 -5.86 11.20 -13.38 -0.15 -6.01 16 19 C 0.31 3.90 7.69 -154.55 -1.19 2.72 16 20 C -0.15 -2.04 6.90 -83.70 -0.58 -2.62 16 21 C 0.59 8.60 7.44 -15.08 -0.11 8.49 16 22 O -0.50 -8.35 15.71 5.11 0.08 -8.27 16 23 N -0.55 -7.10 2.96 -131.63 -0.39 -7.49 16 24 C 0.09 0.85 10.09 59.85 0.60 1.46 16 25 C 0.71 9.14 8.12 -87.37 -0.71 8.43 16 26 O -0.54 -7.53 15.01 5.28 0.08 -7.46 16 27 N -0.51 -6.04 3.06 -128.31 -0.39 -6.44 16 28 C 0.09 0.75 10.63 59.84 0.64 1.39 16 29 H 0.07 1.84 6.89 -51.93 -0.36 1.48 16 30 H 0.03 0.82 6.32 -51.92 -0.33 0.49 16 31 H 0.01 0.22 6.81 -51.93 -0.35 -0.14 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.08 1.52 6.43 -51.93 -0.33 1.18 16 34 H 0.04 0.70 6.30 -51.93 -0.33 0.38 16 35 H 0.02 0.47 6.26 -51.93 -0.32 0.14 16 36 H 0.07 1.21 8.00 -51.93 -0.42 0.79 16 37 H 0.04 0.69 6.96 -51.93 -0.36 0.33 16 38 H 0.10 1.45 5.83 -51.93 -0.30 1.15 16 39 H 0.11 1.17 8.13 -51.93 -0.42 0.75 16 40 H 0.23 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.09 0.85 7.34 -51.93 -0.38 0.47 16 43 H 0.09 0.96 7.40 -51.92 -0.38 0.57 16 44 H 0.10 0.81 6.85 -51.93 -0.36 0.46 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 369.65 15.07 5.57 5.57 Total: -1.00 -32.27 369.65 -9.43 -41.70 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.23 Total: -0.08 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: -2.20 Total: 13.80 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -1.70 Total: -61.10 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: 0.16 Total: -15.72 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.27 -9.43 -41.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182458522.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.327 kcal (2) G-P(sol) polarization free energy of solvation -32.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds