Wall clock time and date at job start Tue Mar 31 2020 18:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46839 * 2 1 4 4 C 1.50696 * 109.47046 * 239.99876 * 2 1 3 5 5 H 1.08000 * 120.00459 * 245.50134 * 4 2 1 6 6 C 1.37884 * 119.99947 * 65.50870 * 4 2 1 7 7 N 1.31512 * 119.99896 * 9.67206 * 6 4 2 8 8 Si 1.86795 * 120.00146 * 189.67992 * 6 4 2 9 9 H 1.48492 * 109.47588 * 84.99005 * 8 6 4 10 10 H 1.48497 * 109.46999 * 204.99509 * 8 6 4 11 11 H 1.48509 * 109.46908 * 324.98785 * 8 6 4 12 12 N 1.46901 * 109.47263 * 120.00135 * 2 1 3 13 13 C 1.46906 * 110.99959 * 58.94929 * 12 2 1 14 14 C 1.46903 * 110.99658 * 295.00369 * 12 2 1 15 15 C 1.53011 * 109.46813 * 189.99858 * 14 12 2 16 16 N 1.46498 * 109.47080 * 179.97438 * 15 14 12 17 17 C 1.34730 * 126.50271 * 264.69373 * 16 15 14 18 18 N 1.30873 * 109.71234 * 179.82125 * 17 16 15 19 19 C 1.33551 * 109.80083 * 0.44857 * 18 17 16 20 20 C 1.38051 * 126.50579 * 84.99867 * 16 15 14 21 21 C 1.41157 * 134.58860 * 0.02562 * 20 16 15 22 22 O 1.21788 * 120.38885 * 0.02562 * 21 20 16 23 23 N 1.34935 * 119.22111 * 179.97438 * 21 20 16 24 24 C 1.46500 * 119.50228 * 179.97438 * 23 21 20 25 25 C 1.34414 * 120.99206 * 359.97438 * 23 21 20 26 26 O 1.21603 * 119.16387 * 179.97438 * 25 23 21 27 27 N 1.34638 * 121.66760 * 0.02562 * 25 23 21 28 28 C 1.46494 * 119.95029 * 179.97438 * 27 25 23 29 29 H 1.08996 * 109.47128 * 61.15032 * 1 2 3 30 30 H 1.09007 * 109.47005 * 181.14784 * 1 2 3 31 31 H 1.08998 * 109.47225 * 301.14490 * 1 2 3 32 32 H 0.96995 * 120.00113 * 180.02562 * 7 6 4 33 33 H 1.09005 * 109.46649 * 60.00518 * 13 12 2 34 34 H 1.08995 * 109.46964 * 179.97438 * 13 12 2 35 35 H 1.08993 * 109.47694 * 300.00588 * 13 12 2 36 36 H 1.09003 * 109.47019 * 309.99491 * 14 12 2 37 37 H 1.08995 * 109.47678 * 70.00021 * 14 12 2 38 38 H 1.08993 * 109.46860 * 300.00188 * 15 14 12 39 39 H 1.08995 * 109.46865 * 59.99665 * 15 14 12 40 40 H 1.08002 * 125.14863 * 359.96254 * 17 16 15 41 41 H 1.08995 * 109.47712 * 89.99356 * 24 23 21 42 42 H 1.08997 * 109.47058 * 210.00162 * 24 23 21 43 43 H 1.09008 * 109.46687 * 329.99121 * 24 23 21 44 44 H 1.09006 * 109.47116 * 0.02562 * 28 27 25 45 45 H 1.08999 * 109.47355 * 119.99589 * 28 27 25 46 46 H 1.08999 * 109.47344 * 240.00030 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5780 -1.6374 -1.1339 6 6 1.7954 -0.1768 -2.4796 7 7 1.3031 1.0373 -2.5934 8 14 2.1735 -1.1786 -4.0102 9 1 1.0192 -2.0586 -4.3235 10 1 2.4221 -0.2627 -5.1523 11 1 3.3801 -2.0109 -3.7715 12 7 2.0197 -0.6925 1.1994 13 6 1.5283 -2.0762 1.2460 14 6 1.6487 0.0391 2.4180 15 6 2.3789 -0.5663 3.6186 16 7 2.0094 0.1637 4.8338 17 6 2.6894 1.1825 5.3948 18 7 2.0634 1.5931 6.4683 19 6 0.9630 0.8605 6.6583 20 6 0.9013 -0.0657 5.6247 21 6 -0.1754 -0.9774 5.5815 22 8 -0.2511 -1.7994 4.6861 23 7 -1.1193 -0.9281 6.5445 24 6 -2.2398 -1.8711 6.5054 25 6 -1.0469 -0.0269 7.5392 26 8 -1.9161 -0.0118 8.3895 27 7 -0.0370 0.8600 7.6173 28 6 0.0044 1.8263 8.7176 29 1 -0.3633 0.4958 -0.9001 30 1 -0.3633 -1.0275 0.0206 31 1 -0.3633 0.5315 0.8795 32 1 1.1361 1.4126 -3.4721 33 1 1.8763 -2.6151 0.3647 34 1 1.9060 -2.5658 2.1435 35 1 0.4385 -2.0743 1.2639 36 1 1.9297 1.0870 2.3125 37 1 0.5722 -0.0346 2.5726 38 1 2.0979 -1.6141 3.7241 39 1 3.4553 -0.4926 3.4641 40 1 3.6106 1.5991 5.0148 41 1 -1.9766 -2.7716 7.0601 42 1 -3.1185 -1.4102 6.9566 43 1 -2.4583 -2.1329 5.4700 44 1 -0.8582 1.6749 9.3667 45 1 0.9200 1.6842 9.2917 46 1 -0.0178 2.8383 8.3134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182458522.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:12 Heat of formation + Delta-G solvation = 21.987866 kcal Electronic energy + Delta-G solvation = -29955.810239 eV Core-core repulsion = 25882.602722 eV Total energy + Delta-G solvation = -4073.207518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.17624 -42.26506 -40.29498 -39.24991 -37.57574 -36.50691 -35.54485 -34.37175 -32.02571 -31.19350 -29.40487 -28.89871 -27.81012 -27.29587 -26.90143 -24.97222 -24.54818 -23.64199 -22.20523 -21.05054 -20.52216 -19.52250 -18.52425 -18.37888 -18.22406 -17.39800 -16.93957 -16.74135 -16.58700 -16.43008 -16.05108 -15.99495 -15.82887 -15.34134 -15.32131 -14.81113 -14.60268 -14.42426 -13.99286 -13.96122 -13.58117 -13.41631 -13.32234 -13.28768 -12.85961 -12.77044 -12.64613 -12.61759 -12.39660 -12.10966 -12.05625 -11.93654 -11.72233 -11.53652 -11.29068 -11.10855 -10.99010 -10.67035 -10.46809 -9.30816 -9.01911 -8.15095 -6.20901 -0.23999 0.55963 0.72960 1.41343 1.43337 1.45213 1.53772 1.55181 1.69373 2.24712 2.43264 2.86706 3.16886 3.26358 3.38307 3.66108 3.71771 3.92663 4.06092 4.23915 4.27707 4.33541 4.36429 4.40229 4.48378 4.50447 4.55245 4.61356 4.67938 4.75322 4.76839 4.79448 4.81722 4.87547 4.97152 5.04581 5.16793 5.28921 5.43609 5.59888 5.71830 5.81412 5.98859 6.10315 6.23080 6.36322 6.41414 6.62949 6.72846 6.90715 7.46598 8.94591 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020665 B = 0.002812 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.615943 B = 9954.911660 C =10565.140531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.218 3.782 3 H 0.018 0.982 4 C -0.516 4.516 5 H 0.063 0.937 6 C 0.015 3.985 7 N -0.922 5.922 8 Si 0.954 3.046 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.265 1.265 12 N -0.528 5.528 13 C 0.038 3.962 14 C 0.051 3.949 15 C 0.118 3.882 16 N -0.407 5.407 17 C 0.291 3.709 18 N -0.511 5.511 19 C 0.313 3.687 20 C -0.180 4.180 21 C 0.585 3.415 22 O -0.533 6.533 23 N -0.555 5.555 24 C 0.081 3.919 25 C 0.707 3.293 26 O -0.556 6.556 27 N -0.511 5.511 28 C 0.085 3.915 29 H 0.043 0.957 30 H 0.034 0.966 31 H 0.020 0.980 32 H 0.261 0.739 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.008 0.992 36 H 0.074 0.926 37 H 0.011 0.989 38 H 0.093 0.907 39 H 0.144 0.856 40 H 0.276 0.724 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.915 -0.632 21.959 21.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.110 3.890 3 H 0.036 0.964 4 C -0.554 4.554 5 H 0.081 0.919 6 C -0.184 4.184 7 N -0.561 5.561 8 Si 0.780 3.220 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.190 1.190 12 N -0.252 5.252 13 C -0.111 4.111 14 C -0.078 4.078 15 C -0.003 4.003 16 N -0.088 5.088 17 C 0.008 3.992 18 N -0.235 5.235 19 C 0.080 3.920 20 C -0.296 4.296 21 C 0.381 3.619 22 O -0.411 6.411 23 N -0.299 5.299 24 C -0.058 4.058 25 C 0.410 3.590 26 O -0.431 6.431 27 N -0.238 5.238 28 C -0.055 4.055 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.027 0.973 36 H 0.092 0.908 37 H 0.030 0.970 38 H 0.111 0.889 39 H 0.162 0.838 40 H 0.292 0.708 41 H 0.107 0.893 42 H 0.121 0.879 43 H 0.109 0.891 44 H 0.121 0.879 45 H 0.111 0.889 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.070 -0.445 22.190 22.220 hybrid contribution -1.386 -0.797 -1.676 2.316 sum -0.316 -1.242 20.514 20.554 Atomic orbital electron populations 1.22166 1.01183 0.98882 0.98854 1.19064 0.89124 0.93675 0.87092 0.96442 1.21350 1.35143 1.08222 0.90718 0.91866 1.25668 0.95403 0.95489 1.01873 1.70073 1.46363 1.15274 1.24409 0.85626 0.78711 0.78635 0.79032 1.20446 1.21230 1.18966 1.62271 1.59035 1.02548 1.01303 1.22261 0.96806 0.90180 1.01807 1.22215 0.96632 0.98617 0.90377 1.22136 1.03136 0.96050 0.78983 1.45018 1.16435 1.27070 1.20274 1.26401 0.99104 0.85418 0.88229 1.69766 1.06051 1.28088 1.19586 1.18244 0.91247 0.93660 0.88848 1.18907 0.99465 1.09318 1.01954 1.15728 0.81421 0.83381 0.81389 1.90907 1.76681 1.38991 1.34474 1.45929 1.26325 1.33733 1.23922 1.22091 0.86900 0.91759 1.05098 1.15504 0.82114 0.79186 0.82247 1.90985 1.38637 1.73288 1.40215 1.43963 1.19745 1.34007 1.26127 1.22180 1.05546 0.90614 0.87156 0.93771 0.94654 0.96137 0.92985 0.91853 0.90893 0.97337 0.90775 0.97048 0.88911 0.83772 0.70823 0.89253 0.87868 0.89063 0.87926 0.88904 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.31 8.36 71.98 0.60 -6.70 16 2 C 0.22 10.59 2.20 44.17 0.10 10.69 16 3 H 0.02 0.96 7.98 -2.39 -0.02 0.94 16 4 C -0.52 -27.30 7.97 25.60 0.20 -27.10 16 5 H 0.06 3.30 6.56 -2.91 -0.02 3.28 16 6 C 0.01 0.79 5.19 84.66 0.44 1.23 16 7 N -0.92 -52.44 12.17 21.45 0.26 -52.18 16 8 Si 0.95 42.71 29.55 68.60 2.03 44.74 16 9 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 10 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 11 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 12 N -0.53 -20.72 4.74 -901.43 -4.28 -25.00 16 13 C 0.04 1.40 8.70 127.69 1.11 2.51 16 14 C 0.05 1.66 4.72 86.31 0.41 2.06 16 15 C 0.12 2.78 5.80 86.38 0.50 3.28 16 16 N -0.41 -9.06 2.78 -520.11 -1.44 -10.50 16 17 C 0.29 4.77 12.49 180.25 2.25 7.02 16 18 N -0.51 -10.53 11.20 -196.26 -2.20 -12.72 16 19 C 0.31 7.44 7.69 132.82 1.02 8.46 16 20 C -0.18 -4.77 6.90 39.04 0.27 -4.50 16 21 C 0.59 17.07 7.44 84.93 0.63 17.70 16 22 O -0.53 -18.06 15.71 -4.63 -0.07 -18.13 16 23 N -0.56 -14.17 2.96 -806.91 -2.39 -16.56 16 24 C 0.08 1.63 10.09 127.77 1.29 2.92 16 25 C 0.71 17.76 8.12 179.21 1.45 19.21 16 26 O -0.56 -15.03 15.01 -4.04 -0.06 -15.09 16 27 N -0.51 -11.43 3.06 -678.21 -2.07 -13.51 16 28 C 0.08 1.29 10.63 127.77 1.36 2.65 16 29 H 0.04 2.34 6.89 -2.39 -0.02 2.32 16 30 H 0.03 1.66 6.32 -2.38 -0.02 1.64 16 31 H 0.02 0.90 6.81 -2.39 -0.02 0.88 16 32 H 0.26 14.21 8.31 -92.71 -0.77 13.43 16 33 H 0.06 2.50 6.43 -2.38 -0.02 2.48 16 34 H 0.07 2.27 6.30 -2.39 -0.02 2.26 16 35 H 0.01 0.33 6.26 -2.39 -0.01 0.31 16 36 H 0.07 2.37 8.00 -2.39 -0.02 2.36 16 37 H 0.01 0.43 6.96 -2.39 -0.02 0.41 16 38 H 0.09 2.44 5.83 -2.39 -0.01 2.43 16 39 H 0.14 2.47 8.13 -2.39 -0.02 2.45 16 40 H 0.28 1.56 8.06 -2.91 -0.02 1.53 16 41 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.10 1.85 7.34 -2.39 -0.02 1.83 16 43 H 0.09 1.89 7.40 -2.38 -0.02 1.87 16 44 H 0.10 1.52 6.85 -2.38 -0.02 1.51 16 45 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -70.58 369.65 2.43 -68.15 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 1.02 Total: 11.36 kcal Atomic # 6 Polarization: 27.80 SS G_CDS: 11.64 Total: 39.43 kcal Atomic # 7 Polarization: -118.35 SS G_CDS: -12.12 Total: -130.47 kcal Atomic # 8 Polarization: -33.09 SS G_CDS: -0.13 Total: -33.23 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -70.58 2.43 -68.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182458522.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.142 kcal (2) G-P(sol) polarization free energy of solvation -70.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds