Wall clock time and date at job start Tue Mar 31 2020 19:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47262 * 2 1 4 4 C 1.46700 * 119.81454 * 90.00018 * 3 2 1 5 5 C 1.53036 * 109.06991 * 108.72954 * 4 3 2 6 6 C 1.52450 * 110.17292 * 88.68075 * 5 4 3 7 7 N 1.46061 * 111.51565 * 297.33340 * 6 5 4 8 8 C 1.34776 * 119.81305 * 242.93961 * 7 6 5 9 9 O 1.21593 * 119.99658 * 4.87694 * 8 7 6 10 10 N 1.34775 * 120.00570 * 184.87907 * 8 7 6 11 11 C 1.40196 * 120.00374 * 174.74204 * 10 8 7 12 12 C 1.40395 * 125.96938 * 359.97438 * 11 10 8 13 13 C 1.35248 * 107.86828 * 179.97438 * 12 11 10 14 14 N 1.34970 * 107.85539 * 0.02562 * 13 12 11 15 15 C 1.46503 * 125.97489 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47191 * 124.99793 * 15 14 13 17 17 H 1.08010 * 119.99866 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00095 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99815 * 179.72462 * 18 16 15 20 20 Si 1.86796 * 119.99939 * 359.97438 * 18 16 15 21 21 H 1.48493 * 109.47349 * 269.72626 * 20 18 16 22 22 H 1.48501 * 109.47124 * 29.72491 * 20 18 16 23 23 H 1.48500 * 109.47084 * 149.72518 * 20 18 16 24 24 N 1.31213 * 125.97002 * 180.32559 * 11 10 8 25 25 C 1.46667 * 120.37843 * 63.21123 * 7 6 5 26 26 C 1.34252 * 119.81865 * 269.98395 * 3 2 1 27 27 O 1.21287 * 120.34388 * 357.11050 * 26 3 2 28 28 H 1.09005 * 109.47192 * 59.99816 * 1 2 3 29 29 H 1.09001 * 109.47262 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47160 * 299.99578 * 1 2 3 31 31 H 1.09008 * 109.46934 * 240.00450 * 2 1 3 32 32 H 1.08994 * 109.47628 * 120.00420 * 2 1 3 33 33 H 1.08997 * 109.54034 * 348.85207 * 4 3 2 34 34 H 1.09003 * 109.60639 * 228.64455 * 4 3 2 35 35 H 1.08999 * 109.34998 * 328.46568 * 5 4 3 36 36 H 1.09000 * 109.35336 * 208.89739 * 5 4 3 37 37 H 1.08999 * 109.06927 * 176.80853 * 6 5 4 38 38 H 1.09006 * 109.07236 * 57.85598 * 6 5 4 39 39 H 0.97007 * 119.99704 * 354.73560 * 10 8 7 40 40 H 1.08000 * 126.07000 * 0.03528 * 12 11 10 41 41 H 1.07994 * 126.07522 * 180.02562 * 13 12 11 42 42 H 1.08998 * 109.46870 * 4.99988 * 15 14 13 43 43 H 1.09002 * 109.46838 * 244.99266 * 15 14 13 44 44 H 0.97005 * 120.00276 * 180.27439 * 19 18 16 45 45 H 1.08997 * 109.60015 * 37.50199 * 25 7 6 46 46 H 1.09004 * 109.59816 * 157.97162 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2615 2.0689 1.2728 5 6 3.7701 2.2265 1.4757 6 6 4.2526 3.5269 0.8431 7 7 4.0398 3.5309 -0.6020 8 6 5.0972 3.6017 -1.4347 9 8 6.2271 3.5727 -0.9865 10 7 4.9022 3.7048 -2.7643 11 6 5.9964 3.8894 -3.6211 12 6 7.3419 3.9844 -3.2316 13 6 8.0857 4.1581 -4.3477 14 7 7.2475 4.1736 -5.4055 15 6 7.6353 4.3385 -6.8086 16 6 7.0973 3.1862 -7.6172 17 1 6.5235 2.4089 -7.1343 18 6 7.3367 3.1246 -8.9736 19 7 6.8719 2.1163 -9.6783 20 14 8.3273 4.4700 -9.8091 21 1 7.4115 5.5412 -10.2768 22 1 9.3023 5.0388 -8.8441 23 1 9.0558 3.8995 -10.9706 24 7 5.9413 4.0099 -4.9265 25 6 2.6818 3.4641 -1.1519 26 6 2.2412 2.0105 -1.1648 27 8 2.0904 1.4249 -2.2162 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.8432 1.4816 2.0902 34 1 1.7917 3.0522 1.2529 35 1 4.2866 1.3859 1.0124 36 1 3.9916 2.2400 2.5429 37 1 5.3164 3.6488 1.0468 38 1 3.7086 4.3616 1.2854 39 1 4.0046 3.6513 -3.1285 40 1 7.7166 3.9278 -2.2203 41 1 9.1596 4.2653 -4.3859 42 1 8.7224 4.3597 -6.8849 43 1 7.2257 5.2733 -7.1912 44 1 7.0437 2.0709 -10.6319 45 1 2.0053 4.0474 -0.5273 46 1 2.6787 3.8604 -2.1673 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191429541.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:20 Heat of formation + Delta-G solvation = 46.614211 kcal Electronic energy + Delta-G solvation = -29213.271601 eV Core-core repulsion = 25141.131962 eV Total energy + Delta-G solvation = -4072.139639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.29372 -40.43601 -39.41089 -37.03875 -35.83176 -34.87440 -33.35108 -32.58906 -31.26966 -30.99651 -29.33607 -27.91606 -27.24842 -26.18729 -23.57487 -23.28972 -22.32560 -21.10889 -20.21532 -19.80424 -19.05531 -18.41140 -17.62572 -17.01515 -16.74302 -16.63620 -15.94154 -15.64738 -15.22362 -14.94120 -14.58288 -14.35232 -14.31000 -14.07261 -13.73703 -13.69644 -13.44999 -13.07849 -12.92653 -12.83299 -12.61130 -12.51386 -12.27812 -12.16463 -11.96524 -11.77574 -11.46740 -11.32744 -11.10548 -10.86046 -10.48493 -10.42502 -10.13446 -9.96872 -9.74068 -9.46860 -9.14303 -8.96114 -8.71792 -8.12976 -7.44869 -6.18028 -4.20229 1.91285 2.45526 2.59268 2.63798 3.02152 3.19444 3.24462 3.25510 3.35923 3.77731 3.99864 4.03678 4.27156 4.34818 4.40794 4.43339 4.70716 4.81471 4.83760 4.89870 4.97242 5.06938 5.09453 5.17526 5.21547 5.37353 5.40258 5.55092 5.60130 5.74371 5.75381 5.82523 5.99238 6.13815 6.25582 6.38507 6.48928 6.56600 6.73516 6.77968 6.98168 7.31946 7.43769 7.73897 7.84252 7.88114 8.39227 8.46305 8.63270 8.93024 9.36667 10.94768 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017467 B = 0.002629 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.673356 B =10646.984250 C =11870.615924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.106 3.894 3 N -0.608 5.608 4 C 0.109 3.891 5 C -0.161 4.161 6 C 0.125 3.875 7 N -0.619 5.619 8 C 0.719 3.281 9 O -0.559 6.559 10 N -0.640 5.640 11 C 0.278 3.722 12 C -0.282 4.282 13 C 0.051 3.949 14 N -0.320 5.320 15 C 0.233 3.767 16 C -0.534 4.534 17 H 0.086 0.914 18 C 0.076 3.924 19 N -0.888 5.888 20 Si 0.875 3.125 21 H -0.272 1.272 22 H -0.265 1.265 23 H -0.281 1.281 24 N -0.297 5.297 25 C 0.093 3.907 26 C 0.499 3.501 27 O -0.523 6.523 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.409 0.591 40 H 0.162 0.838 41 H 0.169 0.831 42 H 0.053 0.947 43 H 0.037 0.963 44 H 0.268 0.732 45 H 0.107 0.893 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.725 2.643 27.264 29.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.016 4.016 3 N -0.343 5.343 4 C -0.014 4.014 5 C -0.201 4.201 6 C 0.002 3.998 7 N -0.359 5.359 8 C 0.420 3.580 9 O -0.434 6.434 10 N -0.292 5.292 11 C 0.023 3.977 12 C -0.314 4.314 13 C -0.098 4.098 14 N -0.102 5.102 15 C 0.114 3.886 16 C -0.572 4.572 17 H 0.104 0.896 18 C -0.128 4.128 19 N -0.525 5.525 20 Si 0.701 3.299 21 H -0.197 1.197 22 H -0.190 1.190 23 H -0.206 1.206 24 N -0.127 5.127 25 C -0.034 4.034 26 C 0.284 3.716 27 O -0.397 6.397 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.091 0.909 39 H 0.247 0.753 40 H 0.179 0.821 41 H 0.186 0.814 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.078 0.922 45 H 0.125 0.875 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.704 2.278 25.676 27.911 hybrid contribution 0.377 0.418 -0.077 0.568 sum -10.327 2.697 25.599 27.735 Atomic orbital electron populations 1.22123 0.95660 1.02392 1.02248 1.21497 0.94446 0.82197 1.03465 1.47992 1.65762 1.14433 1.06102 1.21761 0.95957 0.98140 0.85508 1.22396 0.95954 0.99578 1.02123 1.21280 1.04388 0.96751 0.77363 1.46822 1.03828 1.78757 1.06469 1.15515 0.84361 0.77681 0.80444 1.90861 1.20529 1.56506 1.75535 1.41584 1.08923 1.74639 1.04020 1.18786 0.87249 1.02510 0.89116 1.21494 0.90533 1.19147 1.00198 1.22534 0.97583 1.02613 0.87061 1.48610 1.01968 1.52086 1.07527 1.20042 0.96229 0.98949 0.73410 1.21134 1.35647 1.07550 0.92878 0.89606 1.24838 0.95356 0.95777 0.96826 1.69880 1.44814 1.30213 1.07596 0.86888 0.80739 0.82337 0.79956 1.19730 1.18964 1.20633 1.77419 1.01191 1.27243 1.06891 1.22049 0.85095 0.93625 1.02681 1.21338 0.77017 0.89710 0.83556 1.90806 1.50675 1.67540 1.30686 0.92147 0.91492 0.92647 0.89664 0.90532 0.89340 0.90493 0.90394 0.89012 0.87819 0.90916 0.75317 0.82090 0.81408 0.92906 0.94513 0.92218 0.87493 0.87080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 10.24 37.16 0.38 -0.72 16 2 C 0.11 0.83 6.08 -4.04 -0.02 0.80 16 3 N -0.61 -4.98 2.48 -173.14 -0.43 -5.40 16 4 C 0.11 0.49 5.83 -3.91 -0.02 0.47 16 5 C -0.16 -0.88 5.92 -26.99 -0.16 -1.04 16 6 C 0.12 0.90 5.90 -4.56 -0.03 0.87 16 7 N -0.62 -6.49 2.67 -180.64 -0.48 -6.97 16 8 C 0.72 11.04 8.23 -86.92 -0.72 10.33 16 9 O -0.56 -9.97 12.81 5.28 0.07 -9.90 16 10 N -0.64 -10.98 5.33 -15.51 -0.08 -11.07 16 11 C 0.28 5.86 8.11 -154.36 -1.25 4.61 16 12 C -0.28 -5.69 9.61 -39.84 -0.38 -6.08 16 13 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 14 N -0.32 -7.50 3.67 -62.56 -0.23 -7.73 16 15 C 0.23 5.67 5.33 -5.19 -0.03 5.64 16 16 C -0.53 -15.52 9.79 -34.44 -0.34 -15.86 16 17 H 0.09 2.84 8.06 -52.48 -0.42 2.42 16 18 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 19 N -0.89 -27.26 13.96 55.43 0.77 -26.49 16 20 Si 0.87 20.57 27.47 -169.99 -4.67 15.90 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 N -0.30 -7.13 12.43 31.44 0.39 -6.74 16 25 C 0.09 0.82 5.50 -4.51 -0.02 0.79 16 26 C 0.50 5.63 7.27 -10.63 -0.08 5.56 16 27 O -0.52 -8.39 16.68 5.55 0.09 -8.30 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.89 7.38 -51.92 -0.38 0.51 16 32 H 0.08 0.43 8.02 -51.93 -0.42 0.01 16 33 H 0.09 0.23 7.90 -51.93 -0.41 -0.18 16 34 H 0.08 0.23 6.72 -51.93 -0.35 -0.12 16 35 H 0.08 0.65 8.04 -51.93 -0.42 0.24 16 36 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.10 0.94 6.87 -51.93 -0.36 0.58 16 38 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 39 H 0.41 6.36 6.36 -40.82 -0.26 6.10 16 40 H 0.16 3.13 5.93 -52.49 -0.31 2.82 16 41 H 0.17 2.64 8.06 -52.49 -0.42 2.22 16 42 H 0.05 1.18 7.13 -51.93 -0.37 0.81 16 43 H 0.04 0.88 7.57 -51.93 -0.39 0.48 16 44 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.11 0.53 7.18 -51.93 -0.37 0.16 16 46 H 0.11 1.04 5.87 -51.93 -0.30 0.74 16 LS Contribution 372.96 15.07 5.62 5.62 Total: -1.00 -38.15 372.96 -8.38 -46.53 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.47 Total: 6.27 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -2.96 Total: 8.28 kcal Atomic # 7 Polarization: -64.34 SS G_CDS: -0.06 Total: -64.40 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.16 Total: -18.20 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -38.15 -8.38 -46.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191429541.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.146 kcal (2) G-P(sol) polarization free energy of solvation -38.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds