Wall clock time and date at job start Tue Mar 31 2020 19:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47262 * 2 1 4 4 C 1.46700 * 119.81454 * 90.00018 * 3 2 1 5 5 C 1.53036 * 109.06991 * 108.72954 * 4 3 2 6 6 C 1.52450 * 110.17292 * 88.68075 * 5 4 3 7 7 N 1.46061 * 111.51565 * 297.33340 * 6 5 4 8 8 C 1.34776 * 119.81305 * 242.93961 * 7 6 5 9 9 O 1.21593 * 119.99658 * 4.87694 * 8 7 6 10 10 N 1.34775 * 120.00570 * 184.87907 * 8 7 6 11 11 C 1.40196 * 120.00374 * 174.74204 * 10 8 7 12 12 C 1.40395 * 125.96938 * 359.97438 * 11 10 8 13 13 C 1.35248 * 107.86828 * 179.97438 * 12 11 10 14 14 N 1.34970 * 107.85539 * 0.02562 * 13 12 11 15 15 C 1.46503 * 125.97489 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47191 * 124.99793 * 15 14 13 17 17 H 1.08010 * 119.99866 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00095 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99815 * 179.72462 * 18 16 15 20 20 Si 1.86796 * 119.99939 * 359.97438 * 18 16 15 21 21 H 1.48493 * 109.47349 * 269.72626 * 20 18 16 22 22 H 1.48501 * 109.47124 * 29.72491 * 20 18 16 23 23 H 1.48500 * 109.47084 * 149.72518 * 20 18 16 24 24 N 1.31213 * 125.97002 * 180.32559 * 11 10 8 25 25 C 1.46667 * 120.37843 * 63.21123 * 7 6 5 26 26 C 1.34252 * 119.81865 * 269.98395 * 3 2 1 27 27 O 1.21287 * 120.34388 * 357.11050 * 26 3 2 28 28 H 1.09005 * 109.47192 * 59.99816 * 1 2 3 29 29 H 1.09001 * 109.47262 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47160 * 299.99578 * 1 2 3 31 31 H 1.09008 * 109.46934 * 240.00450 * 2 1 3 32 32 H 1.08994 * 109.47628 * 120.00420 * 2 1 3 33 33 H 1.08997 * 109.54034 * 348.85207 * 4 3 2 34 34 H 1.09003 * 109.60639 * 228.64455 * 4 3 2 35 35 H 1.08999 * 109.34998 * 328.46568 * 5 4 3 36 36 H 1.09000 * 109.35336 * 208.89739 * 5 4 3 37 37 H 1.08999 * 109.06927 * 176.80853 * 6 5 4 38 38 H 1.09006 * 109.07236 * 57.85598 * 6 5 4 39 39 H 0.97007 * 119.99704 * 354.73560 * 10 8 7 40 40 H 1.08000 * 126.07000 * 0.03528 * 12 11 10 41 41 H 1.07994 * 126.07522 * 180.02562 * 13 12 11 42 42 H 1.08998 * 109.46870 * 4.99988 * 15 14 13 43 43 H 1.09002 * 109.46838 * 244.99266 * 15 14 13 44 44 H 0.97005 * 120.00276 * 180.27439 * 19 18 16 45 45 H 1.08997 * 109.60015 * 37.50199 * 25 7 6 46 46 H 1.09004 * 109.59816 * 157.97162 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2615 2.0689 1.2728 5 6 3.7701 2.2265 1.4757 6 6 4.2526 3.5269 0.8431 7 7 4.0398 3.5309 -0.6020 8 6 5.0972 3.6017 -1.4347 9 8 6.2271 3.5727 -0.9865 10 7 4.9022 3.7048 -2.7643 11 6 5.9964 3.8894 -3.6211 12 6 7.3419 3.9844 -3.2316 13 6 8.0857 4.1581 -4.3477 14 7 7.2475 4.1736 -5.4055 15 6 7.6353 4.3385 -6.8086 16 6 7.0973 3.1862 -7.6172 17 1 6.5235 2.4089 -7.1343 18 6 7.3367 3.1246 -8.9736 19 7 6.8719 2.1163 -9.6783 20 14 8.3273 4.4700 -9.8091 21 1 7.4115 5.5412 -10.2768 22 1 9.3023 5.0388 -8.8441 23 1 9.0558 3.8995 -10.9706 24 7 5.9413 4.0099 -4.9265 25 6 2.6818 3.4641 -1.1519 26 6 2.2412 2.0105 -1.1648 27 8 2.0904 1.4249 -2.2162 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.8432 1.4816 2.0902 34 1 1.7917 3.0522 1.2529 35 1 4.2866 1.3859 1.0124 36 1 3.9916 2.2400 2.5429 37 1 5.3164 3.6488 1.0468 38 1 3.7086 4.3616 1.2854 39 1 4.0046 3.6513 -3.1285 40 1 7.7166 3.9278 -2.2203 41 1 9.1596 4.2653 -4.3859 42 1 8.7224 4.3597 -6.8849 43 1 7.2257 5.2733 -7.1912 44 1 7.0437 2.0709 -10.6319 45 1 2.0053 4.0474 -0.5273 46 1 2.6787 3.8604 -2.1673 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191429541.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:19 Heat of formation + Delta-G solvation = 18.775043 kcal Electronic energy + Delta-G solvation = -29214.478798 eV Core-core repulsion = 25141.131962 eV Total energy + Delta-G solvation = -4073.346836 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.46529 -41.73149 -40.54904 -37.90040 -36.70051 -36.32924 -35.24823 -33.58551 -32.74882 -31.87317 -30.98046 -29.11502 -28.56615 -27.02475 -24.75905 -24.22403 -23.64540 -22.41547 -21.66288 -20.90049 -19.99547 -19.48893 -19.11115 -18.43952 -18.07865 -17.59181 -17.26384 -16.72494 -16.43194 -16.18651 -16.11677 -15.48032 -15.23668 -14.94238 -14.81721 -14.79277 -14.46031 -14.38811 -14.29235 -13.94417 -13.84896 -13.55744 -13.44361 -13.22164 -12.97222 -12.70703 -12.61766 -12.35492 -12.19483 -12.00077 -11.92486 -11.82527 -11.69933 -11.49694 -11.25180 -11.13889 -10.88559 -9.98979 -9.79526 -9.71393 -9.07503 -8.38083 -6.49184 0.90158 1.01186 1.34347 1.39205 1.42507 1.49475 1.59531 1.94486 2.05853 2.28570 2.31607 2.72829 2.94333 3.34372 3.74116 3.84051 3.92608 3.96838 4.10137 4.17314 4.23934 4.31485 4.39888 4.42970 4.52676 4.58025 4.67036 4.74404 4.77579 4.82308 4.89698 4.91199 4.96028 5.00069 5.07145 5.23096 5.25724 5.30410 5.43655 5.50599 5.61383 5.87085 6.00236 6.28766 6.38411 6.44117 6.57568 7.00918 7.04284 7.13859 7.23502 8.79522 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017467 B = 0.002629 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.673356 B =10646.984250 C =11870.615924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.101 3.899 3 N -0.601 5.601 4 C 0.103 3.897 5 C -0.152 4.152 6 C 0.115 3.885 7 N -0.606 5.606 8 C 0.713 3.287 9 O -0.587 6.587 10 N -0.643 5.643 11 C 0.281 3.719 12 C -0.291 4.291 13 C 0.063 3.937 14 N -0.344 5.344 15 C 0.240 3.760 16 C -0.550 4.550 17 H 0.021 0.979 18 C 0.012 3.988 19 N -0.945 5.945 20 Si 0.960 3.040 21 H -0.265 1.265 22 H -0.227 1.227 23 H -0.277 1.277 24 N -0.353 5.353 25 C 0.094 3.906 26 C 0.488 3.512 27 O -0.587 6.587 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.106 0.894 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.042 0.958 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.413 0.587 40 H 0.170 0.830 41 H 0.214 0.786 42 H 0.086 0.914 43 H 0.046 0.954 44 H 0.272 0.728 45 H 0.159 0.841 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.203 5.100 30.419 32.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.021 4.021 3 N -0.333 5.333 4 C -0.018 4.018 5 C -0.191 4.191 6 C -0.005 4.005 7 N -0.344 5.344 8 C 0.414 3.586 9 O -0.465 6.465 10 N -0.295 5.295 11 C 0.025 3.975 12 C -0.322 4.322 13 C -0.085 4.085 14 N -0.126 5.126 15 C 0.120 3.880 16 C -0.588 4.588 17 H 0.039 0.961 18 C -0.187 4.187 19 N -0.583 5.583 20 Si 0.780 3.220 21 H -0.190 1.190 22 H -0.149 1.149 23 H -0.203 1.203 24 N -0.184 5.184 25 C -0.032 4.032 26 C 0.274 3.726 27 O -0.466 6.466 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.124 0.876 33 H 0.138 0.862 34 H 0.124 0.876 35 H 0.061 0.939 36 H 0.145 0.855 37 H 0.102 0.898 38 H 0.134 0.866 39 H 0.252 0.748 40 H 0.187 0.813 41 H 0.231 0.769 42 H 0.104 0.896 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.177 0.823 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.225 4.736 28.966 31.081 hybrid contribution 0.096 -0.492 -0.844 0.981 sum -10.128 4.244 28.123 30.191 Atomic orbital electron populations 1.22044 0.94436 1.02980 1.02052 1.21581 0.95425 0.82148 1.02950 1.48179 1.63944 1.14477 1.06711 1.22155 0.95506 0.99912 0.84221 1.22357 0.96201 0.96994 1.03598 1.21690 1.04188 0.99469 0.75197 1.46920 1.03215 1.76976 1.07259 1.15772 0.85280 0.77503 0.80031 1.90821 1.22010 1.57824 1.75800 1.41737 1.08302 1.74879 1.04617 1.19173 0.88872 1.00637 0.88828 1.21703 0.90212 1.19547 1.00777 1.23268 0.99287 1.00173 0.85728 1.48519 1.02378 1.53943 1.07794 1.19907 0.97625 0.96881 0.73544 1.21258 1.35577 1.07948 0.93977 0.96105 1.25998 0.96527 0.98870 0.97296 1.70070 1.46836 1.33178 1.08265 0.85556 0.79347 0.78082 0.78983 1.18966 1.14918 1.20272 1.77329 1.02506 1.29973 1.08555 1.22208 0.84826 0.92732 1.03426 1.21821 0.76563 0.90584 0.83590 1.90780 1.53750 1.68978 1.33129 0.94792 0.90639 0.90167 0.93580 0.87620 0.86213 0.87604 0.93892 0.85532 0.89780 0.86588 0.74839 0.81263 0.76933 0.89603 0.93624 0.91862 0.82314 0.88219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 10.24 71.98 0.74 -1.17 16 2 C 0.10 1.52 6.08 86.38 0.53 2.05 16 3 N -0.60 -8.96 2.48 -820.38 -2.03 -10.99 16 4 C 0.10 0.49 5.83 86.35 0.50 0.99 16 5 C -0.15 -1.16 5.92 30.42 0.18 -0.98 16 6 C 0.12 1.34 5.90 86.28 0.51 1.84 16 7 N -0.61 -11.96 2.67 -843.68 -2.25 -14.21 16 8 C 0.71 22.15 8.23 179.06 1.47 23.62 16 9 O -0.59 -21.12 12.81 -4.01 -0.05 -21.17 16 10 N -0.64 -23.03 5.33 -321.23 -1.71 -24.74 16 11 C 0.28 12.26 8.11 133.31 1.08 13.34 16 12 C -0.29 -11.78 9.61 22.11 0.21 -11.57 16 13 C 0.06 2.46 11.44 83.52 0.96 3.41 16 14 N -0.34 -16.29 3.67 -351.83 -1.29 -17.58 16 15 C 0.24 11.56 5.33 85.63 0.46 12.01 16 16 C -0.55 -33.20 9.79 25.60 0.25 -32.95 16 17 H 0.02 1.48 8.06 -2.91 -0.02 1.45 16 18 C 0.01 0.68 5.47 84.65 0.46 1.14 16 19 N -0.94 -60.42 13.96 21.45 0.30 -60.12 16 20 Si 0.96 41.92 27.47 68.60 1.88 43.81 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.23 -8.47 6.54 99.48 0.65 -7.82 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 24 N -0.35 -17.73 12.43 -54.44 -0.68 -18.41 16 25 C 0.09 1.55 5.50 85.99 0.47 2.02 16 26 C 0.49 11.14 7.27 88.12 0.64 11.78 16 27 O -0.59 -20.44 16.68 -3.05 -0.05 -20.49 16 28 H 0.03 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 1.06 7.38 -2.38 -0.02 1.04 16 32 H 0.11 0.96 8.02 -2.39 -0.02 0.94 16 33 H 0.12 -0.06 7.90 -2.39 -0.02 -0.08 16 34 H 0.11 -0.01 6.72 -2.39 -0.02 -0.03 16 35 H 0.04 0.67 8.04 -2.39 -0.02 0.65 16 36 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 37 H 0.08 1.38 6.87 -2.39 -0.02 1.36 16 38 H 0.12 0.43 8.08 -2.38 -0.02 0.41 16 39 H 0.41 13.76 6.36 -92.70 -0.59 13.17 16 40 H 0.17 6.55 5.93 -2.91 -0.02 6.53 16 41 H 0.21 6.00 8.06 -2.91 -0.02 5.98 16 42 H 0.09 3.56 7.13 -2.39 -0.02 3.54 16 43 H 0.05 2.11 7.57 -2.39 -0.02 2.09 16 44 H 0.27 15.99 8.31 -92.70 -0.77 15.21 16 45 H 0.16 0.94 7.18 -2.39 -0.02 0.92 16 46 H 0.10 1.91 5.87 -2.38 -0.01 1.90 16 Total: -1.00 -93.69 372.96 2.95 -90.74 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: 0.37 Total: 27.61 kcal Atomic # 6 Polarization: 17.09 SS G_CDS: 8.46 Total: 25.55 kcal Atomic # 7 Polarization: -138.39 SS G_CDS: -7.66 Total: -146.05 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -0.10 Total: -41.66 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.88 Total: 43.81 kcal Total: -93.69 2.95 -90.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191429541.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.512 kcal (2) G-P(sol) polarization free energy of solvation -93.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds