Wall clock time and date at job start Tue Mar 31 2020 18:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47354 * 2 1 4 4 C 1.50702 * 109.47081 * 120.00275 * 2 1 3 5 5 O 1.21289 * 119.99863 * 105.11811 * 4 2 1 6 6 N 1.34771 * 120.00125 * 285.38703 * 4 2 1 7 7 C 1.46501 * 120.00094 * 179.72579 * 6 4 2 8 8 C 1.50702 * 109.46995 * 180.02562 * 7 6 4 9 9 H 1.08000 * 119.99792 * 0.02562 * 8 7 6 10 10 C 1.37872 * 119.99806 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00422 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99926 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.46919 * 60.00251 * 12 10 8 14 14 H 1.48504 * 109.46836 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47063 * 300.00136 * 12 10 8 16 16 N 1.46904 * 109.47000 * 240.00317 * 2 1 3 17 17 C 1.46957 * 111.00140 * 75.99797 * 16 2 1 18 18 C 1.53045 * 109.36470 * 176.81122 * 17 16 2 19 19 N 1.46959 * 109.36630 * 58.39943 * 18 17 16 20 20 C 1.39815 * 111.00237 * 176.80687 * 19 18 17 21 21 C 1.38884 * 120.04715 * 123.52932 * 20 19 18 22 22 C 1.38116 * 119.94943 * 179.77484 * 21 20 19 23 23 C 1.38463 * 120.05025 * 0.49781 * 22 21 20 24 24 F 1.35102 * 119.94945 * 179.76658 * 23 22 21 25 25 C 1.38463 * 120.09887 * 359.75103 * 23 22 21 26 26 C 1.38122 * 120.04626 * 0.02562 * 25 23 22 27 27 C 1.46957 * 110.88081 * 300.68115 * 19 18 17 28 28 C 1.46953 * 110.99819 * 312.19588 * 16 2 1 29 29 H 1.09005 * 109.46620 * 299.99905 * 1 2 3 30 30 H 1.09003 * 109.47282 * 59.99400 * 1 2 3 31 31 H 1.08998 * 109.47354 * 179.97438 * 1 2 3 32 32 H 0.96997 * 119.99810 * 359.72798 * 6 4 2 33 33 H 1.09000 * 109.47160 * 300.00114 * 7 6 4 34 34 H 1.08992 * 109.47144 * 60.00518 * 7 6 4 35 35 H 0.97001 * 120.00546 * 180.02562 * 11 10 8 36 36 H 1.09001 * 109.48510 * 296.78194 * 17 16 2 37 37 H 1.09000 * 109.48743 * 56.84675 * 17 16 2 38 38 H 1.08995 * 109.49205 * 298.43793 * 18 17 16 39 39 H 1.08999 * 109.48916 * 178.37012 * 18 17 16 40 40 H 1.07999 * 120.02452 * 0.02562 * 21 20 19 41 41 H 1.08011 * 119.97445 * 180.27397 * 22 21 20 42 42 H 1.07997 * 119.97362 * 179.97438 * 25 23 22 43 43 H 1.08003 * 120.02010 * 180.02562 * 26 25 23 44 44 H 1.08996 * 109.49103 * 299.35060 * 27 19 18 45 45 H 1.09000 * 109.48743 * 179.28237 * 27 19 18 46 46 H 1.08999 * 109.49252 * 303.15852 * 28 16 2 47 47 H 1.09007 * 109.48905 * 63.22631 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.4927 -1.8289 1.1394 6 7 1.9649 -0.1053 2.4327 7 6 2.4477 -0.7983 3.6298 8 6 2.2604 0.0886 4.8336 9 1 1.8248 1.0702 4.7186 10 6 2.6440 -0.3534 6.0819 11 7 3.1740 -1.5489 6.2221 12 14 2.4124 0.7463 7.5741 13 1 0.9712 1.0663 7.7342 14 1 2.9017 0.0437 8.7875 15 1 3.1808 2.0032 7.3868 16 7 2.0196 -0.6925 -1.1995 17 6 1.8822 0.1569 -2.3909 18 6 2.4747 -0.5678 -3.6018 19 7 1.7814 -1.8499 -3.7897 20 6 2.2474 -2.5089 -4.9313 21 6 2.7586 -3.7963 -4.8312 22 6 3.2141 -4.4472 -5.9610 23 6 3.1708 -3.8133 -7.1912 24 9 3.6212 -4.4502 -8.2943 25 6 2.6662 -2.5279 -7.2927 26 6 2.2054 -1.8749 -6.1661 27 6 1.9188 -2.6992 -2.5983 28 6 1.3263 -1.9745 -1.3873 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.5968 0.7891 2.5055 33 1 1.8842 -1.7211 3.7675 34 1 3.5056 -1.0328 3.5120 35 1 3.4435 -1.8600 7.1004 36 1 0.8271 0.3629 -2.5708 37 1 2.4144 1.0948 -2.2322 38 1 3.5360 -0.7497 -3.4332 39 1 2.3478 0.0481 -4.4921 40 1 2.7963 -4.2896 -3.8712 41 1 3.6077 -5.4501 -5.8842 42 1 2.6338 -2.0352 -8.2532 43 1 1.8116 -0.8724 -6.2458 44 1 2.9739 -2.9053 -2.4183 45 1 1.3867 -3.6371 -2.7570 46 1 1.4532 -2.5904 -0.4970 47 1 0.2648 -1.7926 -1.5560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427648277.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:19 Heat of formation + Delta-G solvation = -33.402827 kcal Electronic energy + Delta-G solvation = -28484.869879 eV Core-core repulsion = 24389.340479 eV Total energy + Delta-G solvation = -4095.529400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.05949 -40.74431 -39.44480 -37.86859 -35.63798 -34.16394 -32.44793 -31.99896 -31.36450 -30.72100 -28.91838 -27.24400 -26.11122 -24.66578 -24.00083 -22.45492 -22.33293 -21.64397 -19.91959 -19.33073 -18.21794 -17.24271 -17.07511 -16.57520 -16.05575 -15.79619 -15.76700 -15.13740 -15.04811 -14.82029 -14.63498 -14.57328 -14.31016 -14.12075 -13.98007 -13.79771 -13.27134 -13.15044 -12.82304 -12.69820 -12.37594 -12.17931 -12.01501 -11.98191 -11.85230 -11.62949 -11.37888 -11.15071 -11.02802 -10.94620 -10.89333 -10.83453 -10.31792 -9.86222 -9.43201 -9.42803 -9.00489 -8.74451 -8.21618 -8.04025 -7.87917 -6.18177 -4.25292 0.87657 0.92013 3.16106 3.23603 3.28520 3.29784 3.32299 3.54517 3.62814 4.05433 4.20058 4.36254 4.39132 4.54454 4.60032 4.85049 4.87058 4.92177 5.05669 5.06965 5.12937 5.17117 5.18184 5.26156 5.30624 5.35517 5.41865 5.53448 5.56884 5.63266 5.69553 5.76269 5.84770 5.86625 5.89641 5.91691 6.08355 6.10623 6.40325 6.67147 6.87009 7.00452 7.05432 7.30658 7.43410 7.50632 7.65453 7.95711 8.61862 8.77136 9.10375 9.41510 10.91868 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.030453 B = 0.001940 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.235478 B =14432.589488 C =15016.196522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.064 3.936 3 H 0.100 0.900 4 C 0.508 3.492 5 O -0.542 6.542 6 N -0.712 5.712 7 C 0.252 3.748 8 C -0.544 4.544 9 H 0.062 0.938 10 C 0.064 3.936 11 N -0.885 5.885 12 Si 0.904 3.096 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.275 1.275 16 N -0.516 5.516 17 C 0.053 3.947 18 C 0.062 3.938 19 N -0.490 5.490 20 C 0.109 3.891 21 C -0.142 4.142 22 C -0.124 4.124 23 C 0.064 3.936 24 F -0.145 7.145 25 C -0.128 4.128 26 C -0.115 4.115 27 C 0.054 3.946 28 C 0.049 3.951 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.389 0.611 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.266 0.734 36 H 0.045 0.955 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.060 0.940 45 H 0.085 0.915 46 H 0.110 0.890 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.118 1.663 -25.044 25.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.049 4.049 3 H 0.118 0.882 4 C 0.291 3.709 5 O -0.420 6.420 6 N -0.361 5.361 7 C 0.132 3.868 8 C -0.582 4.582 9 H 0.080 0.920 10 C -0.140 4.140 11 N -0.522 5.522 12 Si 0.731 3.269 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.201 1.201 16 N -0.240 5.240 17 C -0.075 4.075 18 C -0.063 4.063 19 N -0.205 5.205 20 C 0.011 3.989 21 C -0.163 4.163 22 C -0.144 4.144 23 C 0.044 3.956 24 F -0.124 7.124 25 C -0.148 4.148 26 C -0.135 4.135 27 C -0.073 4.073 28 C -0.079 4.079 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.221 0.779 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.157 0.843 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.078 0.922 45 H 0.104 0.896 46 H 0.128 0.872 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.686 0.742 -24.881 25.164 hybrid contribution -0.345 0.875 0.705 1.175 sum -4.032 1.617 -24.176 24.564 Atomic orbital electron populations 1.22351 0.95289 1.03291 1.02850 1.21655 0.94258 0.98598 0.90344 0.88242 1.20168 0.79564 0.86838 0.84306 1.90597 1.46032 1.19431 1.85911 1.46442 1.62179 1.19567 1.07917 1.19073 0.95195 0.92812 0.79767 1.21188 1.43126 1.02013 0.91919 0.91984 1.24950 0.94709 0.95257 0.99095 1.69960 1.40526 1.17524 1.24238 0.86480 0.78567 0.80352 0.81532 1.20089 1.21070 1.20070 1.62004 1.56847 1.03881 1.01305 1.22235 0.99917 0.96133 0.89257 1.22307 0.96859 0.88857 0.98288 1.59333 1.53153 1.05606 1.02451 1.19061 0.94585 0.93693 0.91580 1.21276 1.00138 0.95748 0.99167 1.21026 1.01391 1.00867 0.91082 1.17627 1.02622 0.92293 0.83092 1.91482 1.87259 1.81833 1.51803 1.20985 1.00366 0.93549 0.99854 1.20632 1.01817 1.00786 0.90305 1.22417 1.01274 0.95777 0.87849 1.22451 0.95500 0.91254 0.98652 0.91095 0.91915 0.91456 0.77866 0.95644 0.95556 0.92386 0.93642 0.89775 0.92613 0.89698 0.84288 0.84743 0.84721 0.84808 0.92225 0.89627 0.87193 0.93895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 8.29 37.16 0.31 -1.74 16 2 C 0.06 0.86 2.70 -68.86 -0.19 0.67 16 3 H 0.10 1.17 7.91 -51.93 -0.41 0.76 16 4 C 0.51 9.62 6.98 -10.99 -0.08 9.55 16 5 O -0.54 -12.34 14.29 5.55 0.08 -12.26 16 6 N -0.71 -14.42 5.55 -61.47 -0.34 -14.76 16 7 C 0.25 6.54 5.43 -5.19 -0.03 6.51 16 8 C -0.54 -14.51 9.28 -34.44 -0.32 -14.83 16 9 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -25.81 13.29 55.43 0.74 -25.08 16 12 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 13 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 14 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 16 N -0.52 -6.75 4.41 -227.88 -1.00 -7.75 16 17 C 0.05 0.52 5.40 -3.77 -0.02 0.50 16 18 C 0.06 0.58 5.38 -3.77 -0.02 0.56 16 19 N -0.49 -4.97 4.76 -170.94 -0.81 -5.79 16 20 C 0.11 1.06 5.64 -83.74 -0.47 0.59 16 21 C -0.14 -1.35 8.82 -39.39 -0.35 -1.70 16 22 C -0.12 -1.14 10.02 -39.54 -0.40 -1.54 16 23 C 0.06 0.62 7.30 -39.42 -0.29 0.33 16 24 F -0.14 -1.52 17.26 2.25 0.04 -1.48 16 25 C -0.13 -1.08 10.02 -39.54 -0.40 -1.47 16 26 C -0.12 -0.97 9.19 -39.39 -0.36 -1.34 16 27 C 0.05 0.60 4.29 -3.76 -0.02 0.58 16 28 C 0.05 0.64 4.43 -3.77 -0.02 0.62 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.60 7.01 -51.93 -0.36 0.23 16 31 H 0.07 0.84 6.39 -51.93 -0.33 0.51 16 32 H 0.39 6.72 8.32 -40.82 -0.34 6.38 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.05 0.43 7.01 -51.93 -0.36 0.06 16 37 H 0.08 0.73 8.02 -51.93 -0.42 0.31 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.61 6.82 -51.93 -0.35 0.26 16 40 H 0.14 1.22 5.81 -52.49 -0.31 0.91 16 41 H 0.13 1.02 8.06 -52.48 -0.42 0.59 16 42 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.13 0.91 7.19 -52.48 -0.38 0.53 16 44 H 0.06 0.73 7.57 -51.93 -0.39 0.34 16 45 H 0.09 0.86 7.18 -51.93 -0.37 0.48 16 46 H 0.11 1.76 5.92 -51.93 -0.31 1.45 16 47 H 0.04 0.53 6.41 -51.92 -0.33 0.19 16 LS Contribution 375.19 15.07 5.65 5.65 Total: -1.00 -31.62 375.19 -10.15 -41.77 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.74 Total: 5.17 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -2.73 Total: -1.05 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -1.42 Total: -53.38 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.08 Total: -12.26 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.62 -10.15 -41.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427648277.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.363 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds