Wall clock time and date at job start Tue Mar 31 2020 18:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47354 * 2 1 4 4 C 1.50702 * 109.47081 * 120.00275 * 2 1 3 5 5 O 1.21289 * 119.99863 * 105.11811 * 4 2 1 6 6 N 1.34771 * 120.00125 * 285.38703 * 4 2 1 7 7 C 1.46501 * 120.00094 * 179.72579 * 6 4 2 8 8 C 1.50702 * 109.46995 * 180.02562 * 7 6 4 9 9 H 1.08000 * 119.99792 * 0.02562 * 8 7 6 10 10 C 1.37872 * 119.99806 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00422 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99926 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.46919 * 60.00251 * 12 10 8 14 14 H 1.48504 * 109.46836 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47063 * 300.00136 * 12 10 8 16 16 N 1.46904 * 109.47000 * 240.00317 * 2 1 3 17 17 C 1.46957 * 111.00140 * 75.99797 * 16 2 1 18 18 C 1.53045 * 109.36470 * 176.81122 * 17 16 2 19 19 N 1.46959 * 109.36630 * 58.39943 * 18 17 16 20 20 C 1.39815 * 111.00237 * 176.80687 * 19 18 17 21 21 C 1.38884 * 120.04715 * 123.52932 * 20 19 18 22 22 C 1.38116 * 119.94943 * 179.77484 * 21 20 19 23 23 C 1.38463 * 120.05025 * 0.49781 * 22 21 20 24 24 F 1.35102 * 119.94945 * 179.76658 * 23 22 21 25 25 C 1.38463 * 120.09887 * 359.75103 * 23 22 21 26 26 C 1.38122 * 120.04626 * 0.02562 * 25 23 22 27 27 C 1.46957 * 110.88081 * 300.68115 * 19 18 17 28 28 C 1.46953 * 110.99819 * 312.19588 * 16 2 1 29 29 H 1.09005 * 109.46620 * 299.99905 * 1 2 3 30 30 H 1.09003 * 109.47282 * 59.99400 * 1 2 3 31 31 H 1.08998 * 109.47354 * 179.97438 * 1 2 3 32 32 H 0.96997 * 119.99810 * 359.72798 * 6 4 2 33 33 H 1.09000 * 109.47160 * 300.00114 * 7 6 4 34 34 H 1.08992 * 109.47144 * 60.00518 * 7 6 4 35 35 H 0.97001 * 120.00546 * 180.02562 * 11 10 8 36 36 H 1.09001 * 109.48510 * 296.78194 * 17 16 2 37 37 H 1.09000 * 109.48743 * 56.84675 * 17 16 2 38 38 H 1.08995 * 109.49205 * 298.43793 * 18 17 16 39 39 H 1.08999 * 109.48916 * 178.37012 * 18 17 16 40 40 H 1.07999 * 120.02452 * 0.02562 * 21 20 19 41 41 H 1.08011 * 119.97445 * 180.27397 * 22 21 20 42 42 H 1.07997 * 119.97362 * 179.97438 * 25 23 22 43 43 H 1.08003 * 120.02010 * 180.02562 * 26 25 23 44 44 H 1.08996 * 109.49103 * 299.35060 * 27 19 18 45 45 H 1.09000 * 109.48743 * 179.28237 * 27 19 18 46 46 H 1.08999 * 109.49252 * 303.15852 * 28 16 2 47 47 H 1.09007 * 109.48905 * 63.22631 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.4927 -1.8289 1.1394 6 7 1.9649 -0.1053 2.4327 7 6 2.4477 -0.7983 3.6298 8 6 2.2604 0.0886 4.8336 9 1 1.8248 1.0702 4.7186 10 6 2.6440 -0.3534 6.0819 11 7 3.1740 -1.5489 6.2221 12 14 2.4124 0.7463 7.5741 13 1 0.9712 1.0663 7.7342 14 1 2.9017 0.0437 8.7875 15 1 3.1808 2.0032 7.3868 16 7 2.0196 -0.6925 -1.1995 17 6 1.8822 0.1569 -2.3909 18 6 2.4747 -0.5678 -3.6018 19 7 1.7814 -1.8499 -3.7897 20 6 2.2474 -2.5089 -4.9313 21 6 2.7586 -3.7963 -4.8312 22 6 3.2141 -4.4472 -5.9610 23 6 3.1708 -3.8133 -7.1912 24 9 3.6212 -4.4502 -8.2943 25 6 2.6662 -2.5279 -7.2927 26 6 2.2054 -1.8749 -6.1661 27 6 1.9188 -2.6992 -2.5983 28 6 1.3263 -1.9745 -1.3873 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.5968 0.7891 2.5055 33 1 1.8842 -1.7211 3.7675 34 1 3.5056 -1.0328 3.5120 35 1 3.4435 -1.8600 7.1004 36 1 0.8271 0.3629 -2.5708 37 1 2.4144 1.0948 -2.2322 38 1 3.5360 -0.7497 -3.4332 39 1 2.3478 0.0481 -4.4921 40 1 2.7963 -4.2896 -3.8712 41 1 3.6077 -5.4501 -5.8842 42 1 2.6338 -2.0352 -8.2532 43 1 1.8116 -0.8724 -6.2458 44 1 2.9739 -2.9053 -2.4183 45 1 1.3867 -3.6371 -2.7570 46 1 1.4532 -2.5904 -0.4970 47 1 0.2648 -1.7926 -1.5560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427648277.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:18 Heat of formation + Delta-G solvation = -55.831030 kcal Electronic energy + Delta-G solvation = -28485.842439 eV Core-core repulsion = 24389.340479 eV Total energy + Delta-G solvation = -4096.501960 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.82232 -41.63370 -40.66331 -38.95493 -36.62826 -36.02564 -34.36730 -32.74875 -32.38768 -31.53336 -29.86705 -29.06155 -27.00935 -25.56160 -25.41104 -23.84735 -23.18246 -22.59031 -21.27406 -20.46998 -19.00013 -18.79355 -17.93225 -17.62449 -17.29966 -17.20354 -16.57975 -16.54084 -16.24759 -15.93369 -15.84444 -15.50452 -15.37501 -15.19965 -15.09184 -14.67091 -14.44258 -14.16247 -13.99155 -13.93809 -13.55591 -13.45556 -13.30331 -12.99303 -12.89086 -12.83818 -12.71191 -12.61651 -12.29310 -12.19831 -12.06166 -11.85010 -11.71943 -11.49624 -10.77890 -10.65175 -10.49457 -10.10380 -9.77851 -9.22092 -8.80297 -8.28088 -6.44717 0.15452 0.24883 1.43428 1.47415 1.55533 1.82640 2.27618 2.43312 2.48935 2.78510 3.03075 3.06710 3.35642 3.68165 3.77702 3.86862 3.91281 4.06138 4.07342 4.11556 4.19453 4.26626 4.28551 4.37834 4.44677 4.51995 4.67289 4.69267 4.76110 4.78490 4.91201 4.93560 4.94446 5.05473 5.13722 5.16742 5.18478 5.20812 5.21165 5.26504 5.50982 5.68124 5.72694 5.86333 5.87776 5.95626 6.14639 6.22630 6.66692 6.98066 7.24997 7.56423 8.83682 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.030453 B = 0.001940 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.235478 B =14432.589488 C =15016.196522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.077 3.923 3 H 0.129 0.871 4 C 0.501 3.499 5 O -0.586 6.586 6 N -0.708 5.708 7 C 0.270 3.730 8 C -0.556 4.556 9 H 0.085 0.915 10 C 0.002 3.998 11 N -0.931 5.931 12 Si 0.984 3.016 13 H -0.261 1.261 14 H -0.287 1.287 15 H -0.262 1.262 16 N -0.538 5.538 17 C 0.055 3.945 18 C 0.062 3.938 19 N -0.487 5.487 20 C 0.096 3.904 21 C -0.154 4.154 22 C -0.130 4.130 23 C 0.047 3.953 24 F -0.152 7.152 25 C -0.125 4.125 26 C -0.110 4.110 27 C 0.061 3.939 28 C 0.056 3.944 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.051 0.949 32 H 0.407 0.593 33 H -0.015 1.015 34 H -0.016 1.016 35 H 0.268 0.732 36 H 0.060 0.940 37 H 0.102 0.898 38 H 0.040 0.960 39 H 0.114 0.886 40 H 0.138 0.862 41 H 0.144 0.856 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.041 0.959 45 H 0.092 0.908 46 H 0.071 0.929 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.515 4.900 -26.500 27.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.034 4.034 3 H 0.146 0.854 4 C 0.288 3.712 5 O -0.467 6.467 6 N -0.358 5.358 7 C 0.147 3.853 8 C -0.593 4.593 9 H 0.103 0.897 10 C -0.197 4.197 11 N -0.570 5.570 12 Si 0.807 3.193 13 H -0.186 1.186 14 H -0.212 1.212 15 H -0.187 1.187 16 N -0.263 5.263 17 C -0.072 4.072 18 C -0.064 4.064 19 N -0.202 5.202 20 C -0.002 4.002 21 C -0.174 4.174 22 C -0.150 4.150 23 C 0.028 3.972 24 F -0.131 7.131 25 C -0.144 4.144 26 C -0.130 4.130 27 C -0.066 4.066 28 C -0.072 4.072 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.242 0.758 33 H 0.003 0.997 34 H 0.002 0.998 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.121 0.879 38 H 0.058 0.942 39 H 0.132 0.868 40 H 0.156 0.844 41 H 0.162 0.838 42 H 0.175 0.825 43 H 0.175 0.825 44 H 0.059 0.941 45 H 0.110 0.890 46 H 0.089 0.911 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.107 4.021 -26.388 27.176 hybrid contribution 0.132 -0.211 1.069 1.098 sum -4.974 3.810 -25.319 26.083 Atomic orbital electron populations 1.22310 0.93211 1.02859 1.04624 1.21563 0.95590 0.98713 0.87580 0.85375 1.21319 0.78103 0.86414 0.85389 1.90588 1.47685 1.21707 1.86675 1.46173 1.62500 1.20179 1.06986 1.18465 0.92166 0.92133 0.82492 1.21602 1.42871 1.02790 0.92070 0.89749 1.26073 0.94050 0.96706 1.02878 1.70134 1.41826 1.19873 1.25145 0.85220 0.79210 0.78229 0.76633 1.18591 1.21250 1.18654 1.61926 1.57431 1.04458 1.02453 1.22351 1.01129 0.96110 0.87644 1.22409 0.95816 0.88783 0.99355 1.59386 1.53311 1.05673 1.01835 1.19225 0.95094 0.93854 0.91988 1.21349 1.00671 0.96122 0.99292 1.21163 1.01351 1.01438 0.91017 1.17875 1.03336 0.93073 0.82959 1.91462 1.87462 1.82090 1.52103 1.21249 0.99273 0.92941 1.00915 1.20858 1.01091 1.01598 0.89468 1.22259 1.00061 0.96225 0.88050 1.22245 0.96209 0.91140 0.97632 0.90566 0.88816 0.93024 0.75771 0.99666 0.99820 0.92318 0.92204 0.87942 0.94189 0.86786 0.84448 0.83845 0.82507 0.82506 0.94062 0.88968 0.91105 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.51 8.29 71.98 0.60 -2.91 16 2 C 0.08 1.97 2.70 44.17 0.12 2.09 16 3 H 0.13 2.57 7.91 -2.39 -0.02 2.55 16 4 C 0.50 19.43 6.98 87.66 0.61 20.04 16 5 O -0.59 -28.35 14.29 -3.06 -0.04 -28.39 16 6 N -0.71 -29.15 5.55 -466.79 -2.59 -31.74 16 7 C 0.27 14.73 5.43 85.63 0.46 15.20 16 8 C -0.56 -29.90 9.28 25.60 0.24 -29.66 16 9 H 0.08 4.06 7.60 -2.91 -0.02 4.04 16 10 C 0.00 0.14 5.46 84.65 0.46 0.60 16 11 N -0.93 -56.13 13.29 21.45 0.28 -55.84 16 12 Si 0.98 41.93 29.54 68.60 2.03 43.96 16 13 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 14 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 15 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 16 N -0.54 -13.46 4.41 -874.87 -3.86 -17.32 16 17 C 0.05 0.91 5.40 86.31 0.47 1.37 16 18 C 0.06 0.99 5.38 86.31 0.46 1.45 16 19 N -0.49 -9.09 4.76 -694.72 -3.31 -12.40 16 20 C 0.10 1.74 5.64 38.17 0.22 1.96 16 21 C -0.15 -2.89 8.82 22.40 0.20 -2.69 16 22 C -0.13 -2.35 10.02 22.29 0.22 -2.13 16 23 C 0.05 0.87 7.30 22.38 0.16 1.03 16 24 F -0.15 -3.07 17.26 44.97 0.78 -2.30 16 25 C -0.12 -1.82 10.02 22.30 0.22 -1.60 16 26 C -0.11 -1.57 9.19 22.39 0.21 -1.37 16 27 C 0.06 1.38 4.29 86.31 0.37 1.75 16 28 C 0.06 1.46 4.43 86.31 0.38 1.84 16 29 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.09 1.39 7.01 -2.39 -0.02 1.37 16 31 H 0.05 1.23 6.39 -2.39 -0.02 1.22 16 32 H 0.41 13.64 8.32 -92.71 -0.77 12.86 16 33 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 34 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 35 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 36 H 0.06 0.86 7.01 -2.39 -0.02 0.84 16 37 H 0.10 1.35 8.02 -2.39 -0.02 1.33 16 38 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.11 1.18 6.82 -2.39 -0.02 1.17 16 40 H 0.14 2.53 5.81 -2.91 -0.02 2.51 16 41 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 42 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 43 H 0.16 1.48 7.19 -2.91 -0.02 1.46 16 44 H 0.04 1.07 7.57 -2.39 -0.02 1.05 16 45 H 0.09 1.90 7.18 -2.39 -0.02 1.88 16 46 H 0.07 2.42 5.92 -2.39 -0.01 2.41 16 47 H 0.05 1.25 6.41 -2.38 -0.02 1.24 16 Total: -1.00 -72.83 375.19 -1.08 -73.91 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.23 Total: 23.13 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 5.40 Total: 6.98 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -9.47 Total: -117.30 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.04 Total: -28.39 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.78 Total: -2.30 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -72.83 -1.08 -73.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427648277.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.078 kcal (2) G-P(sol) polarization free energy of solvation -72.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds