Wall clock time and date at job start Tue Mar 31 2020 20:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46862 * 2 1 4 4 C 1.46497 * 120.00425 * 269.99823 * 3 2 1 5 5 C 1.50703 * 109.47188 * 270.00436 * 4 3 2 6 6 H 1.07992 * 119.99653 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99797 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99918 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99946 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47000 * 90.00477 * 9 7 5 11 11 H 1.48504 * 109.46822 * 209.99934 * 9 7 5 12 12 H 1.48501 * 109.47211 * 330.00039 * 9 7 5 13 13 C 1.34775 * 119.99916 * 90.00175 * 3 2 1 14 14 O 1.21595 * 120.00327 * 179.97438 * 13 3 2 15 15 N 1.34783 * 120.00149 * 359.97438 * 13 3 2 16 16 C 1.40840 * 120.00479 * 180.02562 * 15 13 3 17 17 C 1.40244 * 126.07381 * 359.97438 * 16 15 13 18 18 N 1.30836 * 108.34101 * 179.73835 * 17 16 15 19 19 N 1.40073 * 108.36612 * 0.44186 * 18 17 16 20 20 C 1.46491 * 126.06034 * 179.81953 * 19 18 17 21 21 C 1.50702 * 109.46957 * 304.68694 * 20 19 18 22 22 O 1.21283 * 120.00262 * 0.02562 * 21 20 19 23 23 N 1.34777 * 119.99928 * 179.72354 * 21 20 19 24 24 C 1.46499 * 120.00199 * 180.27479 * 23 21 20 25 25 C 1.53001 * 117.50348 * 223.62517 * 24 23 21 26 26 C 1.52995 * 59.99914 * 252.50840 * 25 24 23 27 27 C 1.35726 * 126.07994 * 180.02562 * 16 15 13 28 28 H 1.09001 * 109.46987 * 59.99943 * 1 2 3 29 29 H 1.09001 * 109.46481 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47413 * 299.99524 * 1 2 3 31 31 H 1.08997 * 109.47413 * 240.00476 * 2 1 3 32 32 H 1.08997 * 109.47472 * 120.00107 * 2 1 3 33 33 H 1.09004 * 109.46886 * 30.00096 * 4 3 2 34 34 H 1.08994 * 109.47217 * 149.99592 * 4 3 2 35 35 H 0.97000 * 120.00075 * 179.97438 * 8 7 5 36 36 H 0.97000 * 119.99835 * 0.02562 * 15 13 3 37 37 H 1.08000 * 125.82719 * 0.02562 * 17 16 15 38 38 H 1.09004 * 109.47166 * 184.68960 * 20 19 18 39 39 H 1.08994 * 109.47507 * 64.68666 * 20 19 18 40 40 H 0.97000 * 120.00317 * 0.28382 * 23 21 20 41 41 H 1.09006 * 115.54765 * 9.33387 * 24 23 21 42 42 H 1.09000 * 117.49769 * 359.97438 * 25 24 23 43 43 H 1.08999 * 117.49995 * 145.01974 * 25 24 23 44 44 H 1.08999 * 117.50298 * 252.50709 * 26 25 24 45 45 H 1.09008 * 117.51520 * 107.47929 * 26 25 24 46 46 H 1.08001 * 126.21567 * 359.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 -1.2686 5 6 3.6858 1.8352 -1.7037 6 1 4.3428 1.2310 -1.0957 7 6 4.1491 2.3899 -2.8779 8 7 5.3913 2.1837 -3.2573 9 14 3.0122 3.4343 -3.9298 10 1 3.1146 4.8548 -3.5090 11 1 3.4058 3.3111 -5.3564 12 1 1.6128 2.9674 -3.7601 13 6 2.2429 2.0166 1.1672 14 8 2.6486 3.1629 1.1673 15 7 2.0178 1.3814 2.3345 16 6 2.2520 2.0454 3.5542 17 6 2.7172 3.3601 3.7027 18 7 2.8038 3.6242 4.9812 19 7 2.4073 2.4860 5.6949 20 6 2.3606 2.3555 7.1532 21 6 3.7125 2.6873 7.7307 22 8 4.6250 3.0022 6.9965 23 7 3.9059 2.6399 9.0637 24 6 5.2184 2.9682 9.6257 25 6 5.7602 2.0610 10.7322 26 6 5.2632 3.4678 11.0711 27 6 2.0686 1.5265 4.7949 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.5817 1.6878 -2.0283 34 1 2.0954 3.1411 -1.1383 35 1 5.7171 2.5736 -4.0835 36 1 1.6945 0.4669 2.3344 37 1 2.9580 4.0400 2.8989 38 1 2.0935 1.3324 7.4181 39 1 1.6154 3.0414 7.5558 40 1 3.1761 2.3882 9.6511 41 1 5.9375 3.3916 8.9243 42 1 5.1399 1.2201 11.0424 43 1 6.8359 1.8873 10.7589 44 1 6.0118 4.2196 11.3208 45 1 4.3159 3.5524 11.6039 46 1 1.7168 0.5316 5.0248 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428859055.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:47 Heat of formation + Delta-G solvation = 35.980307 kcal Electronic energy + Delta-G solvation = -28162.207978 eV Core-core repulsion = 24089.607218 eV Total energy + Delta-G solvation = -4072.600760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.36378 -41.06890 -40.54327 -38.07616 -37.09998 -35.88911 -34.74452 -34.27001 -33.42850 -31.82160 -30.64868 -29.41209 -27.87958 -24.63352 -24.26685 -23.72924 -23.28228 -22.42869 -21.94466 -21.72346 -20.39844 -19.10458 -18.88151 -18.50221 -18.33507 -17.45322 -17.08265 -16.64093 -16.44174 -16.12961 -15.68875 -15.60081 -15.44878 -15.28582 -14.89905 -14.71801 -14.50382 -14.38390 -13.84287 -13.77163 -13.67833 -13.45937 -13.36022 -13.13864 -12.56113 -12.52890 -12.38825 -12.35785 -12.08705 -11.93587 -11.79793 -11.71272 -11.64815 -11.51427 -11.16605 -10.94229 -10.79843 -10.26877 -9.79092 -9.49480 -8.54809 -8.30681 -6.35253 0.81374 1.32535 1.36064 1.39962 1.46563 1.47529 1.69912 1.87019 2.08984 2.33814 2.52217 2.96259 3.03030 3.11597 3.57607 3.76840 3.81040 3.98593 4.04484 4.05767 4.10845 4.21043 4.25818 4.40953 4.49248 4.67211 4.68916 4.75425 4.79153 4.82485 4.90640 5.01051 5.03026 5.03574 5.19572 5.24318 5.41660 5.46142 5.50384 5.67098 5.83297 6.04216 6.11727 6.31607 6.48844 6.66142 6.70348 7.14114 7.20445 7.26530 7.71553 8.86558 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018880 B = 0.002175 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.694738 B =12871.839274 C =13668.611697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.611 5.611 4 C 0.243 3.757 5 C -0.533 4.533 6 H 0.025 0.975 7 C 0.007 3.993 8 N -0.948 5.948 9 Si 0.950 3.050 10 H -0.279 1.279 11 H -0.275 1.275 12 H -0.233 1.233 13 C 0.696 3.304 14 O -0.625 6.625 15 N -0.644 5.644 16 C 0.005 3.995 17 C 0.020 3.980 18 N -0.296 5.296 19 N -0.364 5.364 20 C 0.123 3.877 21 C 0.493 3.507 22 O -0.571 6.571 23 N -0.682 5.682 24 C 0.047 3.953 25 C -0.181 4.181 26 C -0.171 4.171 27 C 0.039 3.961 28 H 0.047 0.953 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.018 0.982 35 H 0.267 0.733 36 H 0.421 0.579 37 H 0.169 0.831 38 H 0.184 0.816 39 H 0.145 0.855 40 H 0.423 0.577 41 H 0.101 0.899 42 H 0.115 0.885 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.119 0.881 46 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.474 -8.693 31.079 35.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.345 5.345 4 C 0.120 3.880 5 C -0.572 4.572 6 H 0.043 0.957 7 C -0.190 4.190 8 N -0.588 5.588 9 Si 0.772 3.228 10 H -0.205 1.205 11 H -0.200 1.200 12 H -0.156 1.156 13 C 0.397 3.603 14 O -0.505 6.505 15 N -0.296 5.296 16 C -0.100 4.100 17 C -0.168 4.168 18 N -0.119 5.119 19 N -0.151 5.151 20 C -0.001 4.001 21 C 0.279 3.721 22 O -0.449 6.449 23 N -0.335 5.335 24 C -0.059 4.059 25 C -0.219 4.219 26 C -0.209 4.209 27 C -0.108 4.108 28 H 0.066 0.934 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.037 0.963 35 H 0.076 0.924 36 H 0.260 0.740 37 H 0.186 0.814 38 H 0.201 0.799 39 H 0.162 0.838 40 H 0.262 0.738 41 H 0.119 0.881 42 H 0.134 0.866 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.137 0.863 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -13.156 -6.811 31.335 34.661 hybrid contribution 0.197 -0.204 -1.440 1.468 sum -12.959 -7.015 29.895 33.330 Atomic orbital electron populations 1.22168 0.93705 1.03760 1.02155 1.21745 0.95752 0.81053 1.03831 1.47160 1.67969 1.15247 1.04156 1.19212 0.94590 0.92864 0.81317 1.21609 0.97258 1.31876 1.06438 0.95673 1.25890 0.96789 0.97275 0.99092 1.70067 1.17524 1.46774 1.24472 0.85691 0.80612 0.78844 0.77611 1.20508 1.20038 1.15633 1.16032 0.78767 0.84314 0.81141 1.90751 1.53987 1.19459 1.86321 1.41715 1.69883 1.16939 1.01066 1.17750 1.12250 0.93894 0.86135 1.24247 1.01219 0.97365 0.93934 1.77378 1.21130 1.08988 1.04355 1.48001 1.51851 1.09112 1.06087 1.21901 0.94717 1.09432 0.74037 1.21327 0.90999 0.76979 0.82752 1.90843 1.45705 1.47819 1.60486 1.45071 1.13017 1.69296 1.06106 1.21526 0.87478 1.05711 0.91196 1.23498 1.02463 0.94868 1.01066 1.23466 1.04496 0.97675 0.95240 1.22430 1.05135 0.97286 0.85916 0.93365 0.88361 0.92276 0.90434 0.89248 0.92735 0.96346 0.92388 0.73961 0.81404 0.79904 0.83763 0.73800 0.88108 0.86635 0.88131 0.87741 0.86305 0.74732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 10.24 71.98 0.74 -2.63 16 2 C 0.10 2.83 5.89 86.38 0.51 3.33 16 3 N -0.61 -25.48 2.46 -844.19 -2.07 -27.55 16 4 C 0.24 12.15 4.23 85.63 0.36 12.51 16 5 C -0.53 -32.41 9.94 25.60 0.25 -32.16 16 6 H 0.02 1.72 8.06 -2.91 -0.02 1.69 16 7 C 0.01 0.43 5.47 84.65 0.46 0.89 16 8 N -0.95 -61.96 13.96 21.45 0.30 -61.66 16 9 Si 0.95 45.81 27.47 68.60 1.88 47.70 16 10 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.23 -9.95 6.54 99.48 0.65 -9.30 16 13 C 0.70 30.48 8.25 179.05 1.48 31.95 16 14 O -0.62 -33.80 13.08 -4.01 -0.05 -33.85 16 15 N -0.64 -20.67 5.34 -317.70 -1.70 -22.37 16 16 C 0.00 0.15 6.90 37.60 0.26 0.41 16 17 C 0.02 0.79 10.84 85.33 0.92 1.72 16 18 N -0.30 -10.86 11.65 -56.78 -0.66 -11.52 16 19 N -0.36 -8.70 3.42 -350.73 -1.20 -9.90 16 20 C 0.12 1.35 7.00 85.64 0.60 1.95 16 21 C 0.49 9.44 7.86 87.66 0.69 10.13 16 22 O -0.57 -19.44 15.29 -3.04 -0.05 -19.49 16 23 N -0.68 -7.37 5.57 -442.53 -2.46 -9.84 16 24 C 0.05 0.66 6.43 44.99 0.29 0.95 16 25 C -0.18 -1.52 10.46 30.59 0.32 -1.20 16 26 C -0.17 -1.31 10.45 30.59 0.32 -0.99 16 27 C 0.04 0.83 11.52 83.49 0.96 1.79 16 28 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 2.40 8.07 -2.39 -0.02 2.38 16 32 H 0.09 2.01 6.36 -2.39 -0.02 1.99 16 33 H 0.05 2.46 7.13 -2.39 -0.02 2.45 16 34 H 0.02 1.00 6.85 -2.39 -0.02 0.98 16 35 H 0.27 16.23 8.31 -92.71 -0.77 15.46 16 36 H 0.42 9.45 6.56 -92.71 -0.61 8.84 16 37 H 0.17 8.12 5.91 -2.91 -0.02 8.10 16 38 H 0.18 -0.18 8.07 -2.38 -0.02 -0.19 16 39 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.42 0.57 8.83 -92.71 -0.82 -0.25 16 41 H 0.10 2.20 7.40 -2.38 -0.02 2.19 16 42 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.12 0.43 8.14 -2.38 -0.02 0.41 16 46 H 0.24 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -103.33 389.20 1.70 -101.63 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -0.46 Total: 18.20 kcal Atomic # 6 Polarization: 20.50 SS G_CDS: 8.17 Total: 28.66 kcal Atomic # 7 Polarization: -135.05 SS G_CDS: -7.80 Total: -142.84 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -0.10 Total: -53.34 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.88 Total: 47.70 kcal Total: -103.33 1.70 -101.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428859055.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.609 kcal (2) G-P(sol) polarization free energy of solvation -103.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds