Wall clock time and date at job start Tue Mar 31 2020 19:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46513 * 109.46821 * 2 1 4 4 C 1.45643 * 117.70122 * 90.00055 * 3 2 1 5 5 C 1.52987 * 110.77126 * 158.09926 * 4 3 2 6 6 N 1.47270 * 108.18631 * 46.72707 * 5 4 3 7 7 C 1.34780 * 121.35230 * 118.47535 * 6 5 4 8 8 O 1.21592 * 120.00148 * 4.92790 * 7 6 5 9 9 N 1.34776 * 119.99658 * 184.92654 * 7 6 5 10 10 C 1.40202 * 119.99741 * 174.77098 * 9 7 6 11 11 C 1.40400 * 125.97081 * 359.97438 * 10 9 7 12 12 C 1.35247 * 107.86623 * 179.73979 * 11 10 9 13 13 N 1.34965 * 107.85525 * 0.02562 * 12 11 10 14 14 C 1.46497 * 125.97171 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47311 * 125.00066 * 14 13 12 16 16 H 1.07999 * 119.99854 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00316 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99644 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00097 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47336 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47151 * 120.00121 * 19 17 15 22 22 H 1.48501 * 109.46944 * 239.99715 * 19 17 15 23 23 N 1.31202 * 125.97002 * 179.69750 * 10 9 7 24 24 C 1.47049 * 117.29065 * 298.74232 * 6 5 4 25 25 H 1.09004 * 109.56022 * 162.30955 * 24 6 5 26 26 C 1.52997 * 109.57066 * 282.66599 * 24 6 5 27 27 C 1.33373 * 117.70302 * 269.98025 * 3 2 1 28 28 O 1.21278 * 118.49408 * 4.32248 * 27 3 2 29 29 H 1.09004 * 109.46786 * 299.99529 * 1 2 3 30 30 H 1.08999 * 109.47603 * 59.99687 * 1 2 3 31 31 H 1.09000 * 109.46599 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47335 * 240.00858 * 2 1 3 33 33 H 1.09001 * 109.47491 * 119.99774 * 2 1 3 34 34 H 1.09008 * 109.22141 * 37.77277 * 4 3 2 35 35 H 1.08996 * 109.22237 * 278.43447 * 4 3 2 36 36 H 1.09002 * 109.72423 * 287.05272 * 5 4 3 37 37 H 1.09002 * 109.72104 * 166.40040 * 5 4 3 38 38 H 0.97000 * 120.00221 * 354.77547 * 9 7 6 39 39 H 1.08000 * 126.06754 * 359.74473 * 11 10 9 40 40 H 1.08000 * 126.06675 * 180.02562 * 12 11 10 41 41 H 1.08998 * 109.47178 * 244.99709 * 14 13 12 42 42 H 1.09004 * 109.47606 * 4.99935 * 14 13 12 43 43 H 0.97008 * 119.99745 * 179.97438 * 18 17 15 44 44 H 1.09002 * 109.46926 * 60.00613 * 26 24 6 45 45 H 1.09002 * 109.46666 * 179.97438 * 26 24 6 46 46 H 1.08994 * 109.47424 * 300.00092 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3814 0.0000 4 6 2.2440 2.0197 1.2895 5 6 3.2227 3.1876 1.1529 6 7 2.8115 3.9988 -0.0054 7 6 2.4486 5.2891 0.1355 8 8 2.5416 5.8319 1.2195 9 7 1.9826 5.9777 -0.9252 10 6 1.5025 7.2841 -0.7569 11 6 1.4486 7.9933 0.4537 12 6 0.9293 9.2152 0.1959 13 7 0.6626 9.2812 -1.1254 14 6 0.0902 10.4301 -1.8314 15 6 0.9964 10.8227 -2.9698 16 1 1.9077 10.2717 -3.1492 17 6 0.6620 11.8852 -3.7823 18 7 -0.4482 12.5558 -3.5642 19 14 1.7856 12.3722 -5.1929 20 1 2.9614 11.4658 -5.2248 21 1 1.0445 12.2661 -6.4753 22 1 2.2437 13.7716 -5.0003 23 7 1.0297 8.0595 -1.7038 24 6 2.8073 3.3420 -1.3211 25 1 2.2038 3.9241 -2.0176 26 6 4.2406 3.2361 -1.8457 27 6 2.2253 1.9658 -1.1808 28 8 1.9259 1.3589 -2.1872 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.6539 1.2877 1.9854 35 1 1.2952 2.3903 1.6774 36 1 4.2314 2.8057 0.9950 37 1 3.1968 3.7968 2.0564 38 1 1.9793 5.5694 -1.8051 39 1 1.7658 7.6280 1.4192 40 1 0.7584 9.9989 0.9192 41 1 -0.8912 10.1635 -2.2237 42 1 -0.0098 11.2679 -1.1412 43 1 -0.6833 13.3037 -4.1356 44 1 4.8398 2.6491 -1.1495 45 1 4.2356 2.7487 -2.8206 46 1 4.6676 4.2345 -1.9403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429439154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:33 Heat of formation + Delta-G solvation = 42.323678 kcal Electronic energy + Delta-G solvation = -29130.050546 eV Core-core repulsion = 25057.724855 eV Total energy + Delta-G solvation = -4072.325691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.51033 -40.54348 -39.47264 -36.88951 -36.09801 -34.87383 -33.36677 -32.01921 -31.32555 -30.75904 -29.34607 -28.89819 -26.67384 -25.43474 -24.42913 -23.20003 -22.82459 -21.53459 -20.50558 -19.92525 -18.57172 -18.12021 -17.80215 -16.68748 -16.58785 -16.48203 -16.27345 -15.56698 -15.36706 -14.85348 -14.67315 -14.49925 -14.25457 -14.14904 -13.97486 -13.55012 -13.22984 -13.10103 -12.79603 -12.60631 -12.53977 -12.38617 -12.28189 -12.27748 -11.91503 -11.86078 -11.77916 -11.31581 -11.06425 -10.88965 -10.57244 -10.42025 -10.25706 -10.10203 -9.73355 -9.48327 -9.24444 -9.02896 -8.63308 -8.13416 -7.44978 -6.24074 -4.28923 2.01263 2.15871 2.50463 2.61866 3.01900 3.22314 3.22836 3.30459 3.37573 3.76103 3.89660 3.99498 4.27717 4.33727 4.44205 4.59007 4.64988 4.69918 4.81077 4.89649 5.04251 5.11253 5.20068 5.23431 5.28032 5.33761 5.38473 5.50248 5.56039 5.72233 5.75861 5.79971 5.86909 6.02316 6.23047 6.47566 6.50693 6.73744 6.91891 6.96336 7.07233 7.42614 7.63911 7.69991 7.74854 7.90739 8.05121 8.41233 8.63755 8.81036 9.36806 10.84706 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017838 B = 0.002477 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.312487 B =11299.319658 C =11798.159148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.103 3.897 3 N -0.600 5.600 4 C 0.097 3.903 5 C 0.116 3.884 6 N -0.630 5.630 7 C 0.724 3.276 8 O -0.558 6.558 9 N -0.642 5.642 10 C 0.273 3.727 11 C -0.285 4.285 12 C 0.052 3.948 13 N -0.319 5.319 14 C 0.258 3.742 15 C -0.527 4.527 16 H 0.069 0.931 17 C 0.061 3.939 18 N -0.895 5.895 19 Si 0.907 3.093 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.282 1.282 23 N -0.305 5.305 24 C 0.125 3.875 25 H 0.117 0.883 26 C -0.156 4.156 27 C 0.518 3.482 28 O -0.537 6.537 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.405 0.595 39 H 0.160 0.840 40 H 0.168 0.832 41 H 0.045 0.955 42 H 0.057 0.943 43 H 0.266 0.734 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.724 -24.029 11.237 27.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.019 4.019 3 N -0.333 5.333 4 C -0.027 4.027 5 C -0.007 4.007 6 N -0.370 5.370 7 C 0.426 3.574 8 O -0.433 6.433 9 N -0.293 5.293 10 C 0.019 3.981 11 C -0.317 4.317 12 C -0.098 4.098 13 N -0.101 5.101 14 C 0.141 3.859 15 C -0.565 4.565 16 H 0.088 0.912 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.735 3.265 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.208 1.208 23 N -0.136 5.136 24 C 0.018 3.982 25 H 0.135 0.865 26 C -0.215 4.215 27 C 0.305 3.695 28 O -0.414 6.414 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.136 0.864 38 H 0.242 0.758 39 H 0.178 0.822 40 H 0.185 0.815 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.100 0.900 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.186 -23.547 10.144 26.375 hybrid contribution 0.590 0.145 -0.388 0.720 sum 6.776 -23.402 9.757 26.244 Atomic orbital electron populations 1.22093 0.95538 1.02334 1.02595 1.21573 0.94984 0.82066 1.03314 1.47304 1.65211 1.14854 1.05892 1.21904 1.00631 0.95503 0.84674 1.21853 0.97125 0.91200 0.90533 1.47421 1.72000 1.09766 1.07813 1.15379 0.77885 0.80244 0.83936 1.90875 1.59688 1.67215 1.25524 1.41522 1.64555 1.12540 1.10702 1.18771 1.00616 0.85142 0.93546 1.21467 1.16304 0.94611 0.99304 1.22556 1.00961 0.98902 0.87393 1.49074 1.45217 1.10809 1.05002 1.19753 0.94641 0.78645 0.92911 1.21296 1.07721 1.14784 1.12749 0.91242 1.24948 0.95544 0.95766 0.97870 1.69932 1.23272 1.20807 1.39368 0.86276 0.80539 0.78276 0.81439 1.19556 1.20701 1.20770 1.77337 1.23376 0.93219 1.19674 1.21356 0.99491 0.91057 0.86292 0.86516 1.22082 0.93125 1.04028 1.02227 1.19991 0.78179 0.88161 0.83213 1.90760 1.51112 1.63919 1.35584 0.92546 0.92005 0.91511 0.89543 0.90385 0.89084 0.90872 0.90219 0.86358 0.75782 0.82239 0.81467 0.93721 0.92498 0.92390 0.91594 0.89961 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.23 37.16 0.38 -0.82 16 2 C 0.10 0.70 5.89 -4.03 -0.02 0.67 16 3 N -0.60 -4.82 2.81 -175.03 -0.49 -5.31 16 4 C 0.10 0.57 6.57 -4.51 -0.03 0.54 16 5 C 0.12 0.83 6.40 -3.63 -0.02 0.80 16 6 N -0.63 -6.42 2.63 -172.44 -0.45 -6.88 16 7 C 0.72 10.35 8.29 -86.92 -0.72 9.63 16 8 O -0.56 -9.37 12.99 5.28 0.07 -9.30 16 9 N -0.64 -10.13 5.36 -15.51 -0.08 -10.21 16 10 C 0.27 5.47 8.11 -154.36 -1.25 4.22 16 11 C -0.29 -5.59 9.61 -39.83 -0.38 -5.97 16 12 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 13 N -0.32 -7.40 3.67 -62.56 -0.23 -7.63 16 14 C 0.26 6.55 6.26 -5.19 -0.03 6.51 16 15 C -0.53 -14.66 9.24 -34.44 -0.32 -14.98 16 16 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.90 -25.35 13.29 55.43 0.74 -24.62 16 19 Si 0.91 21.41 29.54 -169.99 -5.02 16.39 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 N -0.31 -7.03 12.42 31.44 0.39 -6.64 16 24 C 0.13 1.20 3.00 -69.09 -0.21 0.99 16 25 H 0.12 1.16 5.89 -51.93 -0.31 0.86 16 26 C -0.16 -1.23 9.37 37.16 0.35 -0.88 16 27 C 0.52 5.42 6.80 -11.91 -0.08 5.34 16 28 O -0.54 -7.27 16.25 5.56 0.09 -7.18 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.70 7.23 -51.93 -0.38 0.32 16 33 H 0.08 0.32 7.80 -51.93 -0.41 -0.08 16 34 H 0.09 0.27 7.85 -51.92 -0.41 -0.13 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.43 7.53 -51.93 -0.39 0.04 16 37 H 0.12 0.90 7.07 -51.93 -0.37 0.54 16 38 H 0.41 5.53 6.45 -40.82 -0.26 5.27 16 39 H 0.16 3.02 5.93 -52.49 -0.31 2.71 16 40 H 0.17 2.69 8.06 -52.49 -0.42 2.26 16 41 H 0.04 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 43 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.07 0.45 7.52 -51.93 -0.39 0.06 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 379.42 15.07 5.72 5.72 Total: -1.00 -34.43 379.42 -8.47 -42.90 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.56 Total: 4.27 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: -2.64 Total: 8.49 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -0.13 Total: -61.29 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: 0.16 Total: -16.48 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.43 -8.47 -42.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429439154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.222 kcal (2) G-P(sol) polarization free energy of solvation -34.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds