Wall clock time and date at job start Tue Mar 31 2020 19:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46513 * 109.46821 * 2 1 4 4 C 1.45643 * 117.70122 * 90.00055 * 3 2 1 5 5 C 1.52987 * 110.77126 * 158.09926 * 4 3 2 6 6 N 1.47270 * 108.18631 * 46.72707 * 5 4 3 7 7 C 1.34780 * 121.35230 * 118.47535 * 6 5 4 8 8 O 1.21592 * 120.00148 * 4.92790 * 7 6 5 9 9 N 1.34776 * 119.99658 * 184.92654 * 7 6 5 10 10 C 1.40202 * 119.99741 * 174.77098 * 9 7 6 11 11 C 1.40400 * 125.97081 * 359.97438 * 10 9 7 12 12 C 1.35247 * 107.86623 * 179.73979 * 11 10 9 13 13 N 1.34965 * 107.85525 * 0.02562 * 12 11 10 14 14 C 1.46497 * 125.97171 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47311 * 125.00066 * 14 13 12 16 16 H 1.07999 * 119.99854 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00316 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99644 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00097 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47336 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47151 * 120.00121 * 19 17 15 22 22 H 1.48501 * 109.46944 * 239.99715 * 19 17 15 23 23 N 1.31202 * 125.97002 * 179.69750 * 10 9 7 24 24 C 1.47049 * 117.29065 * 298.74232 * 6 5 4 25 25 H 1.09004 * 109.56022 * 162.30955 * 24 6 5 26 26 C 1.52997 * 109.57066 * 282.66599 * 24 6 5 27 27 C 1.33373 * 117.70302 * 269.98025 * 3 2 1 28 28 O 1.21278 * 118.49408 * 4.32248 * 27 3 2 29 29 H 1.09004 * 109.46786 * 299.99529 * 1 2 3 30 30 H 1.08999 * 109.47603 * 59.99687 * 1 2 3 31 31 H 1.09000 * 109.46599 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47335 * 240.00858 * 2 1 3 33 33 H 1.09001 * 109.47491 * 119.99774 * 2 1 3 34 34 H 1.09008 * 109.22141 * 37.77277 * 4 3 2 35 35 H 1.08996 * 109.22237 * 278.43447 * 4 3 2 36 36 H 1.09002 * 109.72423 * 287.05272 * 5 4 3 37 37 H 1.09002 * 109.72104 * 166.40040 * 5 4 3 38 38 H 0.97000 * 120.00221 * 354.77547 * 9 7 6 39 39 H 1.08000 * 126.06754 * 359.74473 * 11 10 9 40 40 H 1.08000 * 126.06675 * 180.02562 * 12 11 10 41 41 H 1.08998 * 109.47178 * 244.99709 * 14 13 12 42 42 H 1.09004 * 109.47606 * 4.99935 * 14 13 12 43 43 H 0.97008 * 119.99745 * 179.97438 * 18 17 15 44 44 H 1.09002 * 109.46926 * 60.00613 * 26 24 6 45 45 H 1.09002 * 109.46666 * 179.97438 * 26 24 6 46 46 H 1.08994 * 109.47424 * 300.00092 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3814 0.0000 4 6 2.2440 2.0197 1.2895 5 6 3.2227 3.1876 1.1529 6 7 2.8115 3.9988 -0.0054 7 6 2.4486 5.2891 0.1355 8 8 2.5416 5.8319 1.2195 9 7 1.9826 5.9777 -0.9252 10 6 1.5025 7.2841 -0.7569 11 6 1.4486 7.9933 0.4537 12 6 0.9293 9.2152 0.1959 13 7 0.6626 9.2812 -1.1254 14 6 0.0902 10.4301 -1.8314 15 6 0.9964 10.8227 -2.9698 16 1 1.9077 10.2717 -3.1492 17 6 0.6620 11.8852 -3.7823 18 7 -0.4482 12.5558 -3.5642 19 14 1.7856 12.3722 -5.1929 20 1 2.9614 11.4658 -5.2248 21 1 1.0445 12.2661 -6.4753 22 1 2.2437 13.7716 -5.0003 23 7 1.0297 8.0595 -1.7038 24 6 2.8073 3.3420 -1.3211 25 1 2.2038 3.9241 -2.0176 26 6 4.2406 3.2361 -1.8457 27 6 2.2253 1.9658 -1.1808 28 8 1.9259 1.3589 -2.1872 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.6539 1.2877 1.9854 35 1 1.2952 2.3903 1.6774 36 1 4.2314 2.8057 0.9950 37 1 3.1968 3.7968 2.0564 38 1 1.9793 5.5694 -1.8051 39 1 1.7658 7.6280 1.4192 40 1 0.7584 9.9989 0.9192 41 1 -0.8912 10.1635 -2.2237 42 1 -0.0098 11.2679 -1.1412 43 1 -0.6833 13.3037 -4.1356 44 1 4.8398 2.6491 -1.1495 45 1 4.2356 2.7487 -2.8206 46 1 4.6676 4.2345 -1.9403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429439154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:32 Heat of formation + Delta-G solvation = 20.223333 kcal Electronic energy + Delta-G solvation = -29131.008889 eV Core-core repulsion = 25057.724855 eV Total energy + Delta-G solvation = -4073.284033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.51499 -41.88867 -40.62979 -37.75582 -36.90011 -36.28759 -35.27503 -32.98151 -32.50503 -31.83861 -30.94655 -29.69767 -28.48233 -26.24851 -25.34901 -24.65842 -23.74106 -22.71201 -21.97203 -21.21597 -19.71727 -18.92793 -18.75548 -18.60215 -17.89396 -17.31286 -17.28106 -16.91608 -16.55440 -16.29462 -15.81323 -15.63768 -15.46509 -15.20682 -14.79669 -14.51664 -14.47188 -14.20519 -13.87766 -13.80454 -13.68487 -13.64367 -13.25593 -13.23664 -12.93326 -12.87839 -12.73613 -12.60676 -12.49866 -12.30772 -12.08287 -11.87488 -11.68887 -11.46875 -11.35688 -11.01242 -10.72219 -10.02366 -9.83202 -9.71703 -9.07465 -8.33032 -6.46821 0.93837 1.07270 1.35460 1.36935 1.38629 1.51401 1.63012 1.79810 1.96520 2.33085 2.34440 2.64963 2.98750 3.20109 3.63462 3.76026 3.89169 3.95894 4.13189 4.13863 4.23382 4.30283 4.36515 4.51093 4.58101 4.64414 4.65664 4.76293 4.80131 4.84554 4.90277 4.94110 4.98726 5.00138 5.05450 5.11175 5.24000 5.29645 5.44452 5.53595 5.59489 5.82267 5.93509 6.26420 6.29127 6.45278 6.66022 6.93144 7.07002 7.23163 7.25020 8.74715 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017838 B = 0.002477 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.312487 B =11299.319658 C =11798.159148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.101 3.899 3 N -0.595 5.595 4 C 0.097 3.903 5 C 0.110 3.890 6 N -0.617 5.617 7 C 0.724 3.276 8 O -0.583 6.583 9 N -0.641 5.641 10 C 0.282 3.718 11 C -0.288 4.288 12 C 0.058 3.942 13 N -0.345 5.345 14 C 0.272 3.728 15 C -0.546 4.546 16 H 0.052 0.948 17 C 0.018 3.982 18 N -0.921 5.921 19 Si 0.971 3.029 20 H -0.275 1.275 21 H -0.274 1.274 22 H -0.269 1.269 23 N -0.350 5.350 24 C 0.124 3.876 25 H 0.107 0.893 26 C -0.149 4.149 27 C 0.515 3.485 28 O -0.575 6.575 29 H 0.061 0.939 30 H 0.028 0.972 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.134 0.866 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.413 0.587 39 H 0.171 0.829 40 H 0.203 0.797 41 H 0.020 0.980 42 H 0.060 0.940 43 H 0.272 0.728 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.227 -25.467 12.665 29.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.021 4.021 3 N -0.326 5.326 4 C -0.025 4.025 5 C -0.012 4.012 6 N -0.357 5.357 7 C 0.426 3.574 8 O -0.460 6.460 9 N -0.294 5.294 10 C 0.027 3.973 11 C -0.319 4.319 12 C -0.091 4.091 13 N -0.127 5.127 14 C 0.154 3.846 15 C -0.584 4.584 16 H 0.070 0.930 17 C -0.182 4.182 18 N -0.560 5.560 19 Si 0.796 3.204 20 H -0.199 1.199 21 H -0.199 1.199 22 H -0.194 1.194 23 N -0.181 5.181 24 C 0.017 3.983 25 H 0.125 0.875 26 C -0.208 4.208 27 C 0.301 3.699 28 O -0.455 6.455 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.134 0.866 34 H 0.151 0.849 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.135 0.865 38 H 0.252 0.748 39 H 0.188 0.812 40 H 0.220 0.780 41 H 0.038 0.962 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.703 -25.046 11.619 28.665 hybrid contribution 0.124 0.437 -0.720 0.851 sum 7.828 -24.610 10.900 28.031 Atomic orbital electron populations 1.22064 0.95993 1.03008 1.01150 1.21725 0.94555 0.81394 1.04433 1.47425 1.63928 1.15348 1.05910 1.22082 1.00368 0.95963 0.84120 1.22191 0.98806 0.91045 0.89140 1.47454 1.70622 1.08394 1.09199 1.15486 0.77653 0.81248 0.83060 1.90844 1.60785 1.68141 1.26183 1.41607 1.64571 1.11299 1.11876 1.19077 0.98800 0.86230 0.93211 1.21662 1.16258 0.94509 0.99500 1.23190 0.99390 0.99911 0.86597 1.48825 1.47097 1.10687 1.06046 1.19341 0.93219 0.79500 0.92576 1.21426 1.07623 1.15152 1.14169 0.93012 1.25734 0.96896 0.95525 1.00078 1.70004 1.24419 1.21176 1.40360 0.85304 0.78480 0.78225 0.78435 1.19928 1.19950 1.19416 1.77253 1.25629 0.93889 1.21299 1.21403 1.00537 0.90577 0.85755 0.87491 1.22035 0.91935 1.04196 1.02586 1.20072 0.78060 0.88148 0.83570 1.90747 1.52967 1.64772 1.37024 0.91991 0.95299 0.89877 0.91036 0.86583 0.84869 0.91401 0.87673 0.86534 0.74832 0.81196 0.78028 0.96165 0.92179 0.91856 0.89958 0.89972 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 10.23 71.98 0.74 -1.40 16 2 C 0.10 1.14 5.89 86.38 0.51 1.65 16 3 N -0.59 -8.27 2.81 -826.86 -2.32 -10.59 16 4 C 0.10 0.82 6.57 86.54 0.57 1.39 16 5 C 0.11 1.25 6.40 86.23 0.55 1.80 16 6 N -0.62 -11.68 2.63 -817.73 -2.15 -13.83 16 7 C 0.72 20.07 8.29 179.05 1.48 21.55 16 8 O -0.58 -18.90 12.99 -4.01 -0.05 -18.95 16 9 N -0.64 -20.22 5.36 -321.23 -1.72 -21.94 16 10 C 0.28 11.39 8.11 133.31 1.08 12.47 16 11 C -0.29 -11.14 9.61 22.11 0.21 -10.93 16 12 C 0.06 2.25 11.44 83.52 0.96 3.21 16 13 N -0.34 -16.29 3.67 -351.84 -1.29 -17.58 16 14 C 0.27 14.22 6.26 85.63 0.54 14.76 16 15 C -0.55 -31.02 9.24 25.60 0.24 -30.78 16 16 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 17 C 0.02 1.00 5.46 84.65 0.46 1.46 16 18 N -0.92 -52.45 13.29 21.45 0.28 -52.16 16 19 Si 0.97 43.99 29.54 68.60 2.03 46.01 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 N -0.35 -16.53 12.42 -54.44 -0.68 -17.20 16 24 C 0.12 2.28 3.00 43.94 0.13 2.41 16 25 H 0.11 2.16 5.89 -2.38 -0.01 2.15 16 26 C -0.15 -2.15 9.37 71.98 0.67 -1.47 16 27 C 0.51 10.34 6.80 87.68 0.60 10.93 16 28 O -0.58 -15.70 16.25 -3.02 -0.05 -15.75 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 1.07 7.23 -2.39 -0.02 1.05 16 33 H 0.12 0.46 7.80 -2.39 -0.02 0.44 16 34 H 0.13 0.10 7.85 -2.38 -0.02 0.09 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.11 0.73 7.53 -2.39 -0.02 0.71 16 37 H 0.12 1.47 7.07 -2.39 -0.02 1.46 16 38 H 0.41 11.47 6.45 -92.71 -0.60 10.87 16 39 H 0.17 6.24 5.93 -2.91 -0.02 6.22 16 40 H 0.20 6.17 8.06 -2.91 -0.02 6.14 16 41 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.06 3.05 8.07 -2.38 -0.02 3.03 16 43 H 0.27 14.47 8.31 -92.70 -0.77 13.70 16 44 H 0.08 0.91 7.52 -2.39 -0.02 0.89 16 45 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -76.20 379.42 3.20 -73.00 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.41 Total: 21.96 kcal Atomic # 6 Polarization: 18.31 SS G_CDS: 8.73 Total: 27.05 kcal Atomic # 7 Polarization: -125.44 SS G_CDS: -7.87 Total: -133.31 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -0.10 Total: -34.70 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -76.20 3.20 -73.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429439154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.219 kcal (2) G-P(sol) polarization free energy of solvation -76.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds