Wall clock time and date at job start Tue Mar 31 2020 18:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47212 * 2 1 4 4 N 1.46496 * 109.47165 * 239.99715 * 2 1 3 5 5 C 1.34782 * 119.99892 * 85.00111 * 4 2 1 6 6 O 1.21584 * 119.99831 * 0.02562 * 5 4 2 7 7 N 1.34769 * 120.00055 * 180.02562 * 5 4 2 8 8 C 1.40196 * 120.00338 * 180.02562 * 7 5 4 9 9 C 1.40403 * 125.96933 * 0.02562 * 8 7 5 10 10 C 1.35239 * 107.86695 * 179.97438 * 9 8 7 11 11 N 1.34965 * 107.86064 * 0.22301 * 10 9 8 12 12 C 1.46498 * 125.97612 * 179.77493 * 11 10 9 13 13 C 1.50700 * 109.47174 * 125.00144 * 12 11 10 14 14 H 1.07997 * 119.99976 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99885 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00178 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99706 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47276 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46754 * 120.00674 * 17 15 13 20 20 H 1.48493 * 109.47137 * 240.00038 * 17 15 13 21 21 N 1.31208 * 125.97482 * 179.97438 * 8 7 5 22 22 C 1.50702 * 109.46861 * 120.00146 * 2 1 3 23 23 O 1.21280 * 120.00103 * 93.10762 * 22 2 1 24 24 N 1.34779 * 119.99819 * 273.11025 * 22 2 1 25 25 C 1.47022 * 125.64916 * 4.85150 * 24 22 2 26 26 C 1.54313 * 107.27571 * 180.97034 * 25 24 22 27 27 C 1.55156 * 102.86384 * 22.52302 * 26 25 24 28 28 C 1.47422 * 125.64821 * 185.15654 * 24 22 2 29 29 H 1.09003 * 109.46969 * 294.50198 * 1 2 3 30 30 H 1.08997 * 109.46941 * 54.49951 * 1 2 3 31 31 H 1.08997 * 109.47459 * 174.50254 * 1 2 3 32 32 H 0.96999 * 120.00204 * 265.00395 * 4 2 1 33 33 H 0.97008 * 119.99751 * 0.02562 * 7 5 4 34 34 H 1.08007 * 126.06546 * 359.93988 * 9 8 7 35 35 H 1.07998 * 126.06777 * 179.97438 * 10 9 8 36 36 H 1.09008 * 109.46854 * 244.99826 * 12 11 10 37 37 H 1.08997 * 109.47376 * 4.99753 * 12 11 10 38 38 H 0.96993 * 120.00080 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.87823 * 300.51244 * 25 24 22 40 40 H 1.08999 * 109.88471 * 61.67715 * 25 24 22 41 41 H 1.09001 * 110.92234 * 264.10543 * 26 25 24 42 42 H 1.09002 * 110.59425 * 140.78201 * 26 25 24 43 43 H 1.09006 * 111.00013 * 206.23240 * 27 26 25 44 44 H 1.09002 * 111.00487 * 82.38323 * 27 26 25 45 45 H 1.09001 * 110.37169 * 274.67460 * 28 24 22 46 46 H 1.09006 * 110.36608 * 36.88881 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8584 1.1615 -2.4116 7 7 2.5959 -0.6538 -3.4576 8 6 2.7303 0.0457 -4.6652 9 6 2.4359 1.4033 -4.8691 10 6 2.6978 1.6948 -6.1634 11 7 3.1366 0.5671 -6.7611 12 6 3.5290 0.4346 -8.1664 13 6 4.9275 -0.1210 -8.2471 14 1 5.4696 -0.3527 -7.3423 15 6 5.5145 -0.3345 -9.4763 16 7 4.8542 -0.0529 -10.5783 17 14 7.2483 -1.0226 -9.5763 18 1 7.7694 -1.2528 -8.2050 19 1 7.2286 -2.3077 -10.3203 20 1 8.1249 -0.0548 -10.2835 21 7 3.1542 -0.4537 -5.8021 22 6 2.0323 -0.7105 1.2305 23 8 2.2881 -1.8951 1.1848 24 7 2.1972 -0.0293 2.3817 25 6 1.8329 1.3775 2.6048 26 6 2.2257 1.7282 4.0553 27 6 3.3117 0.6701 4.3845 28 6 2.7786 -0.5697 3.6240 29 1 -0.3633 0.4262 0.9352 30 1 -0.3633 0.5968 -0.8366 31 1 -0.3634 -1.0229 -0.0984 32 1 2.2490 -1.6318 -1.1525 33 1 2.8259 -1.5952 -3.4142 34 1 2.0654 2.0923 -4.1244 35 1 2.5738 2.6580 -6.6359 36 1 2.8399 -0.2406 -8.6739 37 1 3.4984 1.4129 -8.6459 38 1 5.2673 -0.2027 -11.4429 39 1 2.3751 2.0158 1.9072 40 1 0.7589 1.5078 2.4718 41 1 1.3720 1.6260 4.7253 42 1 2.6399 2.7351 4.1075 43 1 3.3596 0.4800 5.4567 44 1 4.2846 0.9760 3.9996 45 1 2.0131 -1.0755 4.2126 46 1 3.5942 -1.2555 3.3943 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439577853.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:27 Heat of formation + Delta-G solvation = 25.712135 kcal Electronic energy + Delta-G solvation = -28107.568309 eV Core-core repulsion = 24034.522288 eV Total energy + Delta-G solvation = -4073.046021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.99366 -40.47579 -39.45387 -37.88555 -35.41408 -34.56581 -33.35734 -32.41959 -31.20275 -30.23376 -29.41808 -29.21703 -26.61834 -25.48480 -23.68869 -22.84715 -21.86541 -21.42084 -20.37334 -20.11984 -19.53528 -18.42322 -17.19807 -17.01036 -16.78322 -16.55310 -16.04877 -15.49202 -15.27562 -14.97540 -14.82090 -14.34709 -14.14195 -14.00070 -13.91543 -13.78874 -13.30660 -13.20748 -12.83163 -12.64049 -12.53637 -12.31614 -12.21240 -11.99577 -11.87438 -11.76393 -11.72157 -11.29501 -11.03735 -10.86417 -10.41348 -10.25780 -10.24251 -10.08558 -9.68193 -9.47000 -9.35208 -9.14696 -8.61582 -8.07910 -7.39463 -6.22277 -4.26996 1.98463 2.24783 2.61819 2.71192 3.11271 3.23947 3.31470 3.38245 3.62582 3.81409 3.86254 4.00520 4.24036 4.30511 4.35514 4.39388 4.68634 4.76314 4.78101 4.84085 5.05704 5.12894 5.18205 5.21553 5.29554 5.32285 5.41811 5.45682 5.55102 5.59859 5.76427 5.83717 5.84906 6.14497 6.27978 6.55478 6.58896 6.88101 6.96829 7.03396 7.13197 7.51060 7.63331 7.72211 7.84246 7.98875 8.09275 8.56237 8.69069 8.83742 9.38590 10.86437 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021077 B = 0.001977 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.153604 B =14159.781788 C =14664.430521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.153 3.847 3 H 0.111 0.889 4 N -0.732 5.732 5 C 0.719 3.281 6 O -0.568 6.568 7 N -0.641 5.641 8 C 0.276 3.724 9 C -0.286 4.286 10 C 0.051 3.949 11 N -0.320 5.320 12 C 0.258 3.742 13 C -0.527 4.527 14 H 0.069 0.931 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.907 3.093 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.282 1.282 21 N -0.306 5.306 22 C 0.530 3.470 23 O -0.533 6.533 24 N -0.617 5.617 25 C 0.092 3.908 26 C -0.132 4.132 27 C -0.135 4.135 28 C 0.105 3.895 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.407 0.593 33 H 0.408 0.592 34 H 0.161 0.839 35 H 0.167 0.833 36 H 0.045 0.955 37 H 0.057 0.943 38 H 0.266 0.734 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.243 3.762 30.013 31.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.044 3.956 3 H 0.129 0.871 4 N -0.390 5.390 5 C 0.418 3.582 6 O -0.444 6.444 7 N -0.291 5.291 8 C 0.022 3.978 9 C -0.317 4.317 10 C -0.099 4.099 11 N -0.102 5.102 12 C 0.141 3.859 13 C -0.565 4.565 14 H 0.088 0.912 15 C -0.142 4.142 16 N -0.534 5.534 17 Si 0.735 3.265 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.208 1.208 21 N -0.137 5.137 22 C 0.317 3.683 23 O -0.409 6.409 24 N -0.352 5.352 25 C -0.031 4.031 26 C -0.170 4.170 27 C -0.173 4.173 28 C -0.017 4.017 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.243 0.757 33 H 0.243 0.757 34 H 0.178 0.822 35 H 0.185 0.815 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.105 0.895 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.912 3.103 28.930 30.153 hybrid contribution 0.880 -0.553 0.229 1.064 sum -7.032 2.551 29.159 30.104 Atomic orbital electron populations 1.22137 0.92550 1.03649 1.03425 1.20511 0.95748 0.97480 0.81890 0.87087 1.44768 1.72158 1.14447 1.07656 1.15472 0.78316 0.84782 0.79604 1.90853 1.55967 1.13755 1.83786 1.41323 1.68086 1.13444 1.06210 1.18768 1.01733 0.91552 0.85779 1.21499 1.17882 0.95407 0.96959 1.22550 1.00452 0.93182 0.93745 1.49059 1.46489 1.04541 1.10125 1.19741 0.97007 0.99315 0.69885 1.21307 0.98392 1.43510 0.93299 0.91244 1.24952 0.98763 0.95253 0.95196 1.69928 1.37727 1.47990 0.97750 0.86276 0.83314 0.78637 0.78303 1.19576 1.20715 1.20785 1.77340 1.26608 1.13702 0.96095 1.20368 0.77432 0.86937 0.83532 1.90718 1.50959 1.15012 1.84231 1.48436 1.62318 1.12865 1.11602 1.22209 1.00937 0.81970 0.97941 1.22644 0.99321 1.00006 0.94984 1.22814 0.99034 0.94597 1.00860 1.22266 0.98229 0.96678 0.84567 0.91344 0.90031 0.91486 0.75689 0.75672 0.82158 0.81535 0.93733 0.92526 0.92412 0.90590 0.90716 0.90271 0.89603 0.89547 0.90333 0.91218 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.47 37.16 0.35 -0.99 16 2 C 0.15 1.52 2.47 -69.08 -0.17 1.35 16 3 H 0.11 1.11 6.63 -51.93 -0.34 0.76 16 4 N -0.73 -8.59 5.06 -59.81 -0.30 -8.89 16 5 C 0.72 10.86 8.50 -86.92 -0.74 10.13 16 6 O -0.57 -9.89 13.13 5.29 0.07 -9.82 16 7 N -0.64 -10.41 5.45 -15.51 -0.08 -10.50 16 8 C 0.28 5.65 8.11 -154.36 -1.25 4.40 16 9 C -0.29 -5.73 9.61 -39.84 -0.38 -6.11 16 10 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 11 N -0.32 -7.54 3.67 -62.56 -0.23 -7.77 16 12 C 0.26 6.62 6.26 -5.19 -0.03 6.59 16 13 C -0.53 -14.80 9.23 -34.44 -0.32 -15.12 16 14 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 16 N -0.90 -25.51 13.29 55.43 0.74 -24.78 16 17 Si 0.91 21.60 29.54 -169.99 -5.02 16.57 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 N -0.31 -7.18 12.42 31.44 0.39 -6.79 16 22 C 0.53 5.47 7.04 -10.98 -0.08 5.39 16 23 O -0.53 -7.13 16.33 5.56 0.09 -7.04 16 24 N -0.62 -4.76 3.33 -170.53 -0.57 -5.33 16 25 C 0.09 0.45 6.29 -3.07 -0.02 0.43 16 26 C -0.13 -0.41 6.95 -24.90 -0.17 -0.58 16 27 C -0.13 -0.51 7.08 -24.58 -0.17 -0.68 16 28 C 0.10 0.66 6.89 -2.53 -0.02 0.65 16 29 H 0.07 0.42 7.35 -51.93 -0.38 0.04 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.41 4.41 7.82 -40.82 -0.32 4.09 16 33 H 0.41 5.59 8.84 -40.82 -0.36 5.23 16 34 H 0.16 3.10 5.91 -52.48 -0.31 2.79 16 35 H 0.17 2.73 8.06 -52.49 -0.42 2.30 16 36 H 0.04 1.20 8.14 -51.92 -0.42 0.78 16 37 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 38 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.08 0.38 7.68 -51.93 -0.40 -0.02 16 40 H 0.07 0.29 7.35 -51.93 -0.38 -0.09 16 41 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 42 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.08 0.60 8.09 -51.93 -0.42 0.18 16 LS Contribution 385.37 15.07 5.81 5.81 Total: -1.00 -34.81 385.37 -9.09 -43.90 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -6.68 Total: 6.77 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: -3.30 Total: 7.87 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: -0.06 Total: -64.06 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: 0.16 Total: -16.86 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.81 -9.09 -43.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439577853.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.615 kcal (2) G-P(sol) polarization free energy of solvation -34.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds