Wall clock time and date at job start Tue Mar 31 2020 18:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.47212 * 2 1 4 4 N 1.46496 * 109.47165 * 239.99715 * 2 1 3 5 5 C 1.34782 * 119.99892 * 85.00111 * 4 2 1 6 6 O 1.21584 * 119.99831 * 0.02562 * 5 4 2 7 7 N 1.34769 * 120.00055 * 180.02562 * 5 4 2 8 8 C 1.40196 * 120.00338 * 180.02562 * 7 5 4 9 9 C 1.40403 * 125.96933 * 0.02562 * 8 7 5 10 10 C 1.35239 * 107.86695 * 179.97438 * 9 8 7 11 11 N 1.34965 * 107.86064 * 0.22301 * 10 9 8 12 12 C 1.46498 * 125.97612 * 179.77493 * 11 10 9 13 13 C 1.50700 * 109.47174 * 125.00144 * 12 11 10 14 14 H 1.07997 * 119.99976 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99885 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00178 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99706 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47276 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46754 * 120.00674 * 17 15 13 20 20 H 1.48493 * 109.47137 * 240.00038 * 17 15 13 21 21 N 1.31208 * 125.97482 * 179.97438 * 8 7 5 22 22 C 1.50702 * 109.46861 * 120.00146 * 2 1 3 23 23 O 1.21280 * 120.00103 * 93.10762 * 22 2 1 24 24 N 1.34779 * 119.99819 * 273.11025 * 22 2 1 25 25 C 1.47022 * 125.64916 * 4.85150 * 24 22 2 26 26 C 1.54313 * 107.27571 * 180.97034 * 25 24 22 27 27 C 1.55156 * 102.86384 * 22.52302 * 26 25 24 28 28 C 1.47422 * 125.64821 * 185.15654 * 24 22 2 29 29 H 1.09003 * 109.46969 * 294.50198 * 1 2 3 30 30 H 1.08997 * 109.46941 * 54.49951 * 1 2 3 31 31 H 1.08997 * 109.47459 * 174.50254 * 1 2 3 32 32 H 0.96999 * 120.00204 * 265.00395 * 4 2 1 33 33 H 0.97008 * 119.99751 * 0.02562 * 7 5 4 34 34 H 1.08007 * 126.06546 * 359.93988 * 9 8 7 35 35 H 1.07998 * 126.06777 * 179.97438 * 10 9 8 36 36 H 1.09008 * 109.46854 * 244.99826 * 12 11 10 37 37 H 1.08997 * 109.47376 * 4.99753 * 12 11 10 38 38 H 0.96993 * 120.00080 * 179.97438 * 16 15 13 39 39 H 1.08999 * 109.87823 * 300.51244 * 25 24 22 40 40 H 1.08999 * 109.88471 * 61.67715 * 25 24 22 41 41 H 1.09001 * 110.92234 * 264.10543 * 26 25 24 42 42 H 1.09002 * 110.59425 * 140.78201 * 26 25 24 43 43 H 1.09006 * 111.00013 * 206.23240 * 27 26 25 44 44 H 1.09002 * 111.00487 * 82.38323 * 27 26 25 45 45 H 1.09001 * 110.37169 * 274.67460 * 28 24 22 46 46 H 1.09006 * 110.36608 * 36.88881 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8584 1.1615 -2.4116 7 7 2.5959 -0.6538 -3.4576 8 6 2.7303 0.0457 -4.6652 9 6 2.4359 1.4033 -4.8691 10 6 2.6978 1.6948 -6.1634 11 7 3.1366 0.5671 -6.7611 12 6 3.5290 0.4346 -8.1664 13 6 4.9275 -0.1210 -8.2471 14 1 5.4696 -0.3527 -7.3423 15 6 5.5145 -0.3345 -9.4763 16 7 4.8542 -0.0529 -10.5783 17 14 7.2483 -1.0226 -9.5763 18 1 7.7694 -1.2528 -8.2050 19 1 7.2286 -2.3077 -10.3203 20 1 8.1249 -0.0548 -10.2835 21 7 3.1542 -0.4537 -5.8021 22 6 2.0323 -0.7105 1.2305 23 8 2.2881 -1.8951 1.1848 24 7 2.1972 -0.0293 2.3817 25 6 1.8329 1.3775 2.6048 26 6 2.2257 1.7282 4.0553 27 6 3.3117 0.6701 4.3845 28 6 2.7786 -0.5697 3.6240 29 1 -0.3633 0.4262 0.9352 30 1 -0.3633 0.5968 -0.8366 31 1 -0.3634 -1.0229 -0.0984 32 1 2.2490 -1.6318 -1.1525 33 1 2.8259 -1.5952 -3.4142 34 1 2.0654 2.0923 -4.1244 35 1 2.5738 2.6580 -6.6359 36 1 2.8399 -0.2406 -8.6739 37 1 3.4984 1.4129 -8.6459 38 1 5.2673 -0.2027 -11.4429 39 1 2.3751 2.0158 1.9072 40 1 0.7589 1.5078 2.4718 41 1 1.3720 1.6260 4.7253 42 1 2.6399 2.7351 4.1075 43 1 3.3596 0.4800 5.4567 44 1 4.2846 0.9760 3.9996 45 1 2.0131 -1.0755 4.2126 46 1 3.5942 -1.2555 3.3943 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439577853.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:26 Heat of formation + Delta-G solvation = 1.890173 kcal Electronic energy + Delta-G solvation = -28108.601307 eV Core-core repulsion = 24034.522288 eV Total energy + Delta-G solvation = -4074.079019 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.28254 -41.57516 -40.62463 -38.53540 -36.57602 -35.91771 -35.28598 -33.26464 -32.61932 -31.29240 -30.85399 -29.86051 -28.50266 -26.24120 -25.11519 -24.07744 -22.84268 -22.11353 -21.81545 -21.40406 -20.45159 -19.51532 -18.68877 -18.30207 -17.86058 -17.67486 -17.27540 -16.80555 -16.47016 -16.26576 -15.93385 -15.73820 -15.48586 -15.12478 -14.52724 -14.50073 -14.34346 -14.25256 -13.96776 -13.83815 -13.78882 -13.63292 -13.31622 -13.19931 -12.93248 -12.76146 -12.70341 -12.30668 -12.17751 -12.13524 -12.06274 -11.64315 -11.57646 -11.39054 -11.15988 -11.08640 -10.72019 -10.39688 -9.76873 -9.72533 -9.06241 -8.32688 -6.46460 0.92897 1.08582 1.36729 1.38373 1.38784 1.51381 1.67765 1.79824 2.16726 2.36147 2.38114 2.98704 3.07350 3.23090 3.66949 3.79046 3.94745 3.98002 4.01044 4.09984 4.29266 4.30962 4.47977 4.55036 4.65456 4.70638 4.77672 4.85016 4.90547 4.95125 4.96466 4.98796 5.03036 5.06005 5.13611 5.16634 5.22143 5.33209 5.39170 5.57288 5.71491 5.85225 5.96430 6.30829 6.31275 6.62248 6.69406 6.88553 7.12062 7.23390 7.32602 8.74916 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021077 B = 0.001977 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.153604 B =14159.781788 C =14664.430521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.152 3.848 3 H 0.114 0.886 4 N -0.719 5.719 5 C 0.721 3.279 6 O -0.589 6.589 7 N -0.637 5.637 8 C 0.284 3.716 9 C -0.290 4.290 10 C 0.057 3.943 11 N -0.345 5.345 12 C 0.272 3.728 13 C -0.546 4.546 14 H 0.051 0.949 15 C 0.018 3.982 16 N -0.920 5.920 17 Si 0.971 3.029 18 H -0.276 1.276 19 H -0.274 1.274 20 H -0.269 1.269 21 N -0.350 5.350 22 C 0.527 3.473 23 O -0.572 6.572 24 N -0.614 5.614 25 C 0.082 3.918 26 C -0.124 4.124 27 C -0.128 4.128 28 C 0.097 3.903 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.412 0.588 33 H 0.419 0.581 34 H 0.171 0.829 35 H 0.203 0.797 36 H 0.021 0.979 37 H 0.061 0.939 38 H 0.272 0.728 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.239 4.845 32.034 33.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.043 3.957 3 H 0.132 0.868 4 N -0.377 5.377 5 C 0.421 3.579 6 O -0.466 6.466 7 N -0.288 5.288 8 C 0.028 3.972 9 C -0.321 4.321 10 C -0.091 4.091 11 N -0.127 5.127 12 C 0.153 3.847 13 C -0.584 4.584 14 H 0.069 0.931 15 C -0.183 4.183 16 N -0.559 5.559 17 Si 0.796 3.204 18 H -0.201 1.201 19 H -0.199 1.199 20 H -0.194 1.194 21 N -0.181 5.181 22 C 0.315 3.685 23 O -0.452 6.452 24 N -0.348 5.348 25 C -0.040 4.040 26 C -0.162 4.162 27 C -0.166 4.166 28 C -0.025 4.025 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.249 0.751 33 H 0.256 0.744 34 H 0.189 0.811 35 H 0.220 0.780 36 H 0.039 0.961 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.123 0.877 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.926 4.202 31.024 32.295 hybrid contribution 0.813 -0.854 -0.230 1.201 sum -7.113 3.349 30.794 31.782 Atomic orbital electron populations 1.22085 0.91141 1.03434 1.04401 1.20691 0.96797 0.97218 0.80965 0.86801 1.44722 1.71127 1.14643 1.07163 1.15511 0.77972 0.84555 0.79895 1.90824 1.56916 1.14709 1.84182 1.41353 1.68186 1.13951 1.05351 1.19063 0.99802 0.92090 0.86219 1.21697 1.17890 0.95371 0.97121 1.23185 0.98577 0.93575 0.93793 1.48820 1.48503 1.05731 1.09620 1.19343 0.95369 0.98608 0.71349 1.21431 0.99603 1.44445 0.92940 0.93082 1.25735 1.02549 0.95256 0.94724 1.69997 1.39280 1.48339 0.98258 0.85303 0.78728 0.78378 0.78011 1.20085 1.19891 1.19395 1.77258 1.28918 1.14752 0.97145 1.20359 0.77361 0.86510 0.84258 1.90699 1.52991 1.16547 1.84936 1.48559 1.61027 1.13987 1.11180 1.22496 1.01938 0.80166 0.99387 1.22669 0.99499 1.00315 0.93713 1.22805 0.98876 0.93389 1.01522 1.22438 0.97954 0.97793 0.84346 0.88712 0.91063 0.91872 0.75061 0.74408 0.81145 0.78036 0.96076 0.92163 0.91850 0.90570 0.89243 0.88946 0.88240 0.87651 0.90851 0.90523 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.47 71.98 0.68 -1.66 16 2 C 0.15 2.86 2.47 44.25 0.11 2.97 16 3 H 0.11 2.12 6.63 -2.39 -0.02 2.10 16 4 N -0.72 -16.45 5.06 -461.41 -2.33 -18.78 16 5 C 0.72 21.32 8.50 179.06 1.52 22.84 16 6 O -0.59 -19.94 13.13 -3.98 -0.05 -19.99 16 7 N -0.64 -20.54 5.45 -321.24 -1.75 -22.30 16 8 C 0.28 11.63 8.11 133.31 1.08 12.71 16 9 C -0.29 -11.39 9.61 22.11 0.21 -11.18 16 10 C 0.06 2.26 11.44 83.52 0.96 3.22 16 11 N -0.34 -16.43 3.67 -351.85 -1.29 -17.72 16 12 C 0.27 14.28 6.26 85.63 0.54 14.82 16 13 C -0.55 -31.25 9.23 25.60 0.24 -31.01 16 14 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 15 C 0.02 0.99 5.46 84.65 0.46 1.45 16 16 N -0.92 -52.52 13.29 21.45 0.28 -52.23 16 17 Si 0.97 44.27 29.54 68.60 2.03 46.29 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 21 N -0.35 -16.68 12.42 -54.43 -0.68 -17.35 16 22 C 0.53 10.52 7.04 87.66 0.62 11.14 16 23 O -0.57 -15.36 16.33 -3.03 -0.05 -15.41 16 24 N -0.61 -8.69 3.33 -811.81 -2.70 -11.39 16 25 C 0.08 0.62 6.29 86.73 0.55 1.16 16 26 C -0.12 -0.41 6.95 31.78 0.22 -0.18 16 27 C -0.13 -0.69 7.08 31.99 0.23 -0.47 16 28 C 0.10 1.12 6.89 86.86 0.60 1.72 16 29 H 0.09 0.94 7.35 -2.39 -0.02 0.93 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.41 8.82 7.82 -92.71 -0.72 8.09 16 33 H 0.42 11.45 8.84 -92.70 -0.82 10.63 16 34 H 0.17 6.38 5.91 -2.91 -0.02 6.36 16 35 H 0.20 6.24 8.06 -2.91 -0.02 6.21 16 36 H 0.02 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.06 3.07 8.07 -2.39 -0.02 3.05 16 38 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 39 H 0.08 0.60 7.68 -2.39 -0.02 0.58 16 40 H 0.09 0.43 7.35 -2.39 -0.02 0.41 16 41 H 0.09 0.10 8.14 -2.39 -0.02 0.09 16 42 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 43 H 0.11 0.21 8.14 -2.38 -0.02 0.19 16 44 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.06 0.93 8.09 -2.38 -0.02 0.91 16 Total: -1.00 -75.45 385.37 0.94 -74.51 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: -0.52 Total: 26.84 kcal Atomic # 6 Polarization: 19.53 SS G_CDS: 8.00 Total: 27.53 kcal Atomic # 7 Polarization: -131.30 SS G_CDS: -8.47 Total: -139.77 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -0.10 Total: -35.40 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -75.45 0.94 -74.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439577853.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.401 kcal (2) G-P(sol) polarization free energy of solvation -75.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds