Wall clock time and date at job start Tue Mar 31 2020 19:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.46767 * 124.34893 * 89.99904 * 3 2 1 5 5 C 1.54476 * 105.47856 * 197.01865 * 4 3 2 6 6 H 1.09000 * 110.97267 * 92.70046 * 5 4 3 7 7 C 1.52995 * 110.97297 * 216.42978 * 5 4 3 8 8 N 1.46506 * 109.47190 * 184.99673 * 7 5 4 9 9 C 1.34781 * 119.99735 * 180.02562 * 8 7 5 10 10 O 1.21587 * 120.00118 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99723 * 180.02562 * 9 8 7 12 12 C 1.40190 * 119.99937 * 179.97438 * 11 9 8 13 13 C 1.40398 * 125.97345 * 359.97438 * 12 11 9 14 14 C 1.35241 * 107.87115 * 179.97438 * 13 12 11 15 15 N 1.34970 * 107.85808 * 0.02562 * 14 13 12 16 16 C 1.46498 * 125.97958 * 180.02562 * 15 14 13 17 17 C 1.50705 * 109.46932 * 124.99719 * 16 15 14 18 18 H 1.07998 * 120.00038 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99652 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00115 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99925 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47267 * 59.99548 * 21 19 17 23 23 H 1.48498 * 109.47157 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47045 * 299.99877 * 21 19 17 25 25 N 1.31208 * 125.97379 * 179.68770 * 12 11 9 26 26 C 1.54629 * 101.76276 * 334.58799 * 5 4 3 27 27 C 1.34418 * 124.35246 * 269.70382 * 3 2 1 28 28 O 1.21277 * 124.94298 * 359.57164 * 27 3 2 29 29 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 34 34 H 1.08995 * 110.24667 * 316.02099 * 4 3 2 35 35 H 1.09005 * 110.24284 * 77.92952 * 4 3 2 36 36 H 1.09002 * 109.47429 * 305.00127 * 7 5 4 37 37 H 1.09005 * 109.46991 * 65.00266 * 7 5 4 38 38 H 0.96994 * 119.99805 * 0.02562 * 8 7 5 39 39 H 0.97003 * 119.99779 * 0.02562 * 11 9 8 40 40 H 1.08000 * 126.06657 * 0.02562 * 13 12 11 41 41 H 1.08006 * 126.07699 * 179.97438 * 14 13 12 42 42 H 1.08998 * 109.47518 * 244.99939 * 16 15 14 43 43 H 1.09000 * 109.46944 * 5.00078 * 16 15 14 44 44 H 0.96998 * 120.00001 * 179.97438 * 20 19 17 45 45 H 1.08996 * 110.48738 * 143.47716 * 26 5 4 46 46 H 1.09009 * 110.48328 * 265.98450 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1619 1.2117 5 6 2.3529 3.6346 0.7489 6 1 1.3781 4.1127 0.8449 7 6 3.4190 4.4105 1.5248 8 7 3.3657 5.8249 1.1466 9 6 4.2193 6.7048 1.7066 10 8 5.0338 6.3247 2.5254 11 7 4.1699 8.0060 1.3591 12 6 5.0574 8.9214 1.9420 13 6 6.0425 8.6216 2.8964 14 6 6.6854 9.7709 3.2044 15 7 6.1317 10.7630 2.4757 16 6 6.5277 12.1732 2.5005 17 6 6.8557 12.6275 1.1015 18 1 6.7774 11.9349 0.2766 19 6 7.2567 13.9270 0.8750 20 7 7.3535 14.7700 1.8798 21 14 7.6626 14.4904 -0.8591 22 1 6.4672 14.3277 -1.7251 23 1 8.0642 15.9198 -0.8340 24 1 8.7786 13.6716 -1.3971 25 7 5.1162 10.2072 1.6871 26 6 2.7503 3.4822 -0.7377 27 6 2.2766 2.0944 -1.1097 28 8 2.1462 1.6857 -2.2441 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.4933 2.0265 1.9383 35 1 3.2493 1.8627 1.6438 36 1 3.2329 4.3131 2.5944 37 1 4.4044 4.0084 1.2893 38 1 2.7162 6.1280 0.4931 39 1 3.5198 8.3093 0.7061 40 1 6.2506 7.6461 3.3106 41 1 7.4972 9.8764 3.9089 42 1 5.7081 12.7739 2.8949 43 1 7.4048 12.2931 3.1365 44 1 7.6360 15.6842 1.7205 45 1 2.2490 4.2352 -1.3457 46 1 3.8316 3.5580 -0.8531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593162761.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:23 Heat of formation + Delta-G solvation = 21.597401 kcal Electronic energy + Delta-G solvation = -27491.406447 eV Core-core repulsion = 23418.181998 eV Total energy + Delta-G solvation = -4073.224449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.07238 -40.66120 -39.55648 -37.24398 -35.75294 -34.68372 -33.76584 -33.25387 -31.04112 -30.21404 -29.28870 -28.56330 -26.79952 -25.86177 -23.71195 -23.08670 -21.82156 -21.49373 -20.44517 -19.87968 -19.71934 -18.01100 -17.52115 -17.01254 -16.58969 -16.51892 -15.77360 -15.73097 -15.64359 -14.90756 -14.65395 -14.48285 -14.32676 -14.19593 -14.15067 -13.85840 -13.72989 -13.08714 -12.84855 -12.81550 -12.64399 -12.34696 -12.31023 -12.20575 -11.89391 -11.75524 -11.61238 -11.51109 -11.06270 -10.86317 -10.45483 -10.25219 -10.18418 -10.11574 -9.71483 -9.51312 -9.33254 -9.23715 -8.62311 -8.10759 -7.42144 -6.23681 -4.28793 2.16100 2.25948 2.54956 2.64976 3.09215 3.26028 3.29320 3.33629 3.53514 3.76984 3.81984 3.87984 4.09370 4.26890 4.35475 4.42259 4.52687 4.65611 4.74566 4.85850 4.90181 5.01646 5.11392 5.15872 5.17625 5.24862 5.34804 5.40205 5.50723 5.58795 5.65232 5.80279 6.04396 6.13611 6.25254 6.52720 6.55136 6.62740 6.86185 6.99360 7.09798 7.48427 7.69722 7.73860 7.81270 7.95640 8.06771 8.54062 8.66130 8.81051 9.36778 10.84926 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023876 B = 0.001740 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.426549 B =16090.083785 C =16962.290951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.621 5.621 4 C 0.111 3.889 5 C -0.113 4.113 6 H 0.101 0.899 7 C 0.152 3.848 8 N -0.745 5.745 9 C 0.714 3.286 10 O -0.567 6.567 11 N -0.643 5.643 12 C 0.275 3.725 13 C -0.286 4.286 14 C 0.051 3.949 15 N -0.320 5.320 16 C 0.259 3.741 17 C -0.529 4.529 18 H 0.068 0.932 19 C 0.062 3.938 20 N -0.895 5.895 21 Si 0.908 3.092 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.275 1.275 25 N -0.307 5.307 26 C -0.154 4.154 27 C 0.518 3.482 28 O -0.531 6.531 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.398 0.602 39 H 0.407 0.593 40 H 0.161 0.839 41 H 0.167 0.833 42 H 0.045 0.955 43 H 0.057 0.943 44 H 0.268 0.732 45 H 0.105 0.895 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.825 -26.993 0.929 29.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.001 4.001 3 N -0.356 5.356 4 C -0.013 4.013 5 C -0.132 4.132 6 H 0.119 0.881 7 C 0.027 3.973 8 N -0.402 5.402 9 C 0.413 3.587 10 O -0.442 6.442 11 N -0.293 5.293 12 C 0.021 3.979 13 C -0.318 4.318 14 C -0.099 4.099 15 N -0.102 5.102 16 C 0.141 3.859 17 C -0.568 4.568 18 H 0.087 0.913 19 C -0.140 4.140 20 N -0.534 5.534 21 Si 0.735 3.265 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.201 1.201 25 N -0.138 5.138 26 C -0.194 4.194 27 C 0.306 3.694 28 O -0.408 6.408 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.232 0.768 39 H 0.242 0.758 40 H 0.178 0.822 41 H 0.185 0.815 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.123 0.877 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.569 -26.377 0.476 29.222 hybrid contribution -0.097 0.131 -1.002 1.016 sum -12.666 -26.245 -0.526 29.147 Atomic orbital electron populations 1.22160 0.95651 1.02479 1.02516 1.21355 0.94438 0.80991 1.03296 1.48349 1.66016 1.14055 1.07209 1.22017 1.02452 0.89330 0.87454 1.22400 1.00799 0.95451 0.94593 0.88096 1.21125 0.98228 0.78729 0.99179 1.44935 1.39456 1.07854 1.48003 1.15578 0.81657 0.80035 0.81418 1.90878 1.39377 1.77816 1.36114 1.41360 1.37285 1.05220 1.45400 1.18774 0.93527 0.88856 0.96781 1.21500 1.02737 1.00060 1.07477 1.22561 1.00131 0.88330 0.98884 1.49060 1.23588 1.09495 1.28060 1.19731 0.96372 0.70316 0.99447 1.21227 1.46249 0.96654 0.92629 0.91350 1.24940 0.95014 0.96101 0.97992 1.69907 1.46873 1.05618 1.30963 0.86386 0.78993 0.77444 0.83660 1.19960 1.21055 1.20053 1.77325 1.11941 1.05683 1.18892 1.22514 1.04442 0.95760 0.96654 1.20929 0.76279 0.87863 0.84343 1.90740 1.53285 1.75542 1.21184 0.92335 0.91324 0.92229 0.90190 0.89954 0.89763 0.90224 0.90522 0.90720 0.76829 0.75846 0.82196 0.81539 0.93755 0.92544 0.92286 0.87691 0.87168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 10.24 37.16 0.38 -0.41 16 2 C 0.12 0.62 6.66 -4.04 -0.03 0.59 16 3 N -0.62 -3.82 2.93 -172.42 -0.51 -4.33 16 4 C 0.11 0.39 6.91 -3.12 -0.02 0.37 16 5 C -0.11 -0.43 3.16 -88.99 -0.28 -0.71 16 6 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 7 C 0.15 0.90 4.98 -4.04 -0.02 0.88 16 8 N -0.75 -5.83 5.50 -65.22 -0.36 -6.19 16 9 C 0.71 9.45 8.53 -86.91 -0.74 8.71 16 10 O -0.57 -9.47 13.47 5.29 0.07 -9.40 16 11 N -0.64 -9.38 5.45 -15.51 -0.08 -9.46 16 12 C 0.27 5.39 8.11 -154.37 -1.25 4.14 16 13 C -0.29 -5.59 9.60 -39.84 -0.38 -5.98 16 14 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 15 N -0.32 -7.38 3.67 -62.56 -0.23 -7.61 16 16 C 0.26 6.54 6.26 -5.19 -0.03 6.51 16 17 C -0.53 -14.67 9.23 -34.44 -0.32 -14.98 16 18 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.90 -25.22 13.29 55.43 0.74 -24.48 16 21 Si 0.91 21.30 29.54 -169.99 -5.02 16.28 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 N -0.31 -6.97 12.41 31.44 0.39 -6.58 16 26 C -0.15 -0.87 6.36 -26.74 -0.17 -1.04 16 27 C 0.52 4.54 8.02 -10.86 -0.09 4.46 16 28 O -0.53 -7.02 17.59 5.56 0.10 -6.93 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.08 0.53 7.92 -51.93 -0.41 0.12 16 34 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.08 0.23 7.89 -51.93 -0.41 -0.18 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.51 7.93 -51.93 -0.41 0.10 16 38 H 0.40 2.04 8.49 -40.82 -0.35 1.69 16 39 H 0.41 4.71 8.84 -40.82 -0.36 4.35 16 40 H 0.16 3.05 5.91 -52.49 -0.31 2.74 16 41 H 0.17 2.68 8.06 -52.48 -0.42 2.26 16 42 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 44 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.11 0.64 7.76 -51.92 -0.40 0.24 16 LS Contribution 390.39 15.07 5.88 5.88 Total: -1.00 -36.29 390.39 -9.11 -45.41 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.84 Total: 2.45 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -3.25 Total: 4.96 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: -0.05 Total: -58.66 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: 0.17 Total: -16.32 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.29 -9.11 -45.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593162761.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.004 kcal (2) G-P(sol) polarization free energy of solvation -36.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds