Wall clock time and date at job start Tue Mar 31 2020 19:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.46767 * 124.34893 * 89.99904 * 3 2 1 5 5 C 1.54476 * 105.47856 * 197.01865 * 4 3 2 6 6 H 1.09000 * 110.97267 * 92.70046 * 5 4 3 7 7 C 1.52995 * 110.97297 * 216.42978 * 5 4 3 8 8 N 1.46506 * 109.47190 * 184.99673 * 7 5 4 9 9 C 1.34781 * 119.99735 * 180.02562 * 8 7 5 10 10 O 1.21587 * 120.00118 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99723 * 180.02562 * 9 8 7 12 12 C 1.40190 * 119.99937 * 179.97438 * 11 9 8 13 13 C 1.40398 * 125.97345 * 359.97438 * 12 11 9 14 14 C 1.35241 * 107.87115 * 179.97438 * 13 12 11 15 15 N 1.34970 * 107.85808 * 0.02562 * 14 13 12 16 16 C 1.46498 * 125.97958 * 180.02562 * 15 14 13 17 17 C 1.50705 * 109.46932 * 124.99719 * 16 15 14 18 18 H 1.07998 * 120.00038 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99652 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00115 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99925 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47267 * 59.99548 * 21 19 17 23 23 H 1.48498 * 109.47157 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47045 * 299.99877 * 21 19 17 25 25 N 1.31208 * 125.97379 * 179.68770 * 12 11 9 26 26 C 1.54629 * 101.76276 * 334.58799 * 5 4 3 27 27 C 1.34418 * 124.35246 * 269.70382 * 3 2 1 28 28 O 1.21277 * 124.94298 * 359.57164 * 27 3 2 29 29 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 34 34 H 1.08995 * 110.24667 * 316.02099 * 4 3 2 35 35 H 1.09005 * 110.24284 * 77.92952 * 4 3 2 36 36 H 1.09002 * 109.47429 * 305.00127 * 7 5 4 37 37 H 1.09005 * 109.46991 * 65.00266 * 7 5 4 38 38 H 0.96994 * 119.99805 * 0.02562 * 8 7 5 39 39 H 0.97003 * 119.99779 * 0.02562 * 11 9 8 40 40 H 1.08000 * 126.06657 * 0.02562 * 13 12 11 41 41 H 1.08006 * 126.07699 * 179.97438 * 14 13 12 42 42 H 1.08998 * 109.47518 * 244.99939 * 16 15 14 43 43 H 1.09000 * 109.46944 * 5.00078 * 16 15 14 44 44 H 0.96998 * 120.00001 * 179.97438 * 20 19 17 45 45 H 1.08996 * 110.48738 * 143.47716 * 26 5 4 46 46 H 1.09009 * 110.48328 * 265.98450 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1619 1.2117 5 6 2.3529 3.6346 0.7489 6 1 1.3781 4.1127 0.8449 7 6 3.4190 4.4105 1.5248 8 7 3.3657 5.8249 1.1466 9 6 4.2193 6.7048 1.7066 10 8 5.0338 6.3247 2.5254 11 7 4.1699 8.0060 1.3591 12 6 5.0574 8.9214 1.9420 13 6 6.0425 8.6216 2.8964 14 6 6.6854 9.7709 3.2044 15 7 6.1317 10.7630 2.4757 16 6 6.5277 12.1732 2.5005 17 6 6.8557 12.6275 1.1015 18 1 6.7774 11.9349 0.2766 19 6 7.2567 13.9270 0.8750 20 7 7.3535 14.7700 1.8798 21 14 7.6626 14.4904 -0.8591 22 1 6.4672 14.3277 -1.7251 23 1 8.0642 15.9198 -0.8340 24 1 8.7786 13.6716 -1.3971 25 7 5.1162 10.2072 1.6871 26 6 2.7503 3.4822 -0.7377 27 6 2.2766 2.0944 -1.1097 28 8 2.1462 1.6857 -2.2441 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.4933 2.0265 1.9383 35 1 3.2493 1.8627 1.6438 36 1 3.2329 4.3131 2.5944 37 1 4.4044 4.0084 1.2893 38 1 2.7162 6.1280 0.4931 39 1 3.5198 8.3093 0.7061 40 1 6.2506 7.6461 3.3106 41 1 7.4972 9.8764 3.9089 42 1 5.7081 12.7739 2.8949 43 1 7.4048 12.2931 3.1365 44 1 7.6360 15.6842 1.7205 45 1 2.2490 4.2352 -1.3457 46 1 3.8316 3.5580 -0.8531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593162761.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:22 Heat of formation + Delta-G solvation = -3.968577 kcal Electronic energy + Delta-G solvation = -27492.515071 eV Core-core repulsion = 23418.181998 eV Total energy + Delta-G solvation = -4074.333073 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.17819 -41.56343 -40.72916 -37.94889 -36.50468 -36.00285 -35.24452 -34.30917 -32.66523 -30.97800 -30.75326 -29.09171 -28.49574 -26.60410 -24.90991 -24.13207 -22.99393 -22.01149 -21.91832 -21.12488 -20.37644 -19.07047 -18.66615 -18.23885 -17.97754 -17.41742 -16.97975 -16.71663 -16.33311 -16.29635 -15.89431 -15.57676 -15.36548 -15.13461 -14.88804 -14.64589 -14.43212 -14.23379 -14.18837 -13.75692 -13.74680 -13.50680 -13.32204 -13.10617 -12.92636 -12.76174 -12.70207 -12.29542 -12.25727 -12.06276 -11.99349 -11.91956 -11.59021 -11.36543 -11.07153 -10.86448 -10.70099 -10.14016 -9.73551 -9.67490 -9.00332 -8.30711 -6.44921 1.12140 1.18940 1.39715 1.41403 1.50262 1.53115 1.76462 2.01398 2.19873 2.37986 2.47832 3.00723 3.16895 3.29073 3.50738 3.74455 3.99108 4.03812 4.14726 4.27136 4.32807 4.33978 4.49823 4.61673 4.66583 4.71703 4.74539 4.82848 4.87471 4.91553 4.95269 4.98951 4.99615 5.05665 5.16052 5.22117 5.27368 5.50882 5.58918 5.62140 5.80259 5.93552 6.02946 6.11166 6.33049 6.66336 6.81575 7.12981 7.20706 7.24942 7.50128 8.76279 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023876 B = 0.001740 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.426549 B =16090.083785 C =16962.290951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.617 5.617 4 C 0.108 3.892 5 C -0.094 4.094 6 H 0.120 0.880 7 C 0.152 3.848 8 N -0.721 5.721 9 C 0.712 3.288 10 O -0.601 6.601 11 N -0.637 5.637 12 C 0.285 3.715 13 C -0.291 4.291 14 C 0.054 3.946 15 N -0.346 5.346 16 C 0.273 3.727 17 C -0.548 4.548 18 H 0.053 0.947 19 C 0.019 3.981 20 N -0.920 5.920 21 Si 0.970 3.030 22 H -0.273 1.273 23 H -0.274 1.274 24 H -0.270 1.270 25 N -0.350 5.350 26 C -0.150 4.150 27 C 0.505 3.495 28 O -0.588 6.588 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.033 0.967 32 H 0.108 0.892 33 H 0.062 0.938 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.414 0.586 39 H 0.421 0.579 40 H 0.169 0.831 41 H 0.199 0.801 42 H 0.021 0.979 43 H 0.058 0.942 44 H 0.272 0.728 45 H 0.112 0.888 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.427 -28.169 1.437 31.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.007 4.007 3 N -0.350 5.350 4 C -0.014 4.014 5 C -0.113 4.113 6 H 0.138 0.862 7 C 0.028 3.972 8 N -0.378 5.378 9 C 0.411 3.589 10 O -0.479 6.479 11 N -0.289 5.289 12 C 0.029 3.971 13 C -0.323 4.323 14 C -0.094 4.094 15 N -0.128 5.128 16 C 0.154 3.846 17 C -0.586 4.586 18 H 0.071 0.929 19 C -0.181 4.181 20 N -0.559 5.559 21 Si 0.795 3.205 22 H -0.199 1.199 23 H -0.198 1.198 24 H -0.196 1.196 25 N -0.181 5.181 26 C -0.190 4.190 27 C 0.294 3.706 28 O -0.469 6.469 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.053 0.947 32 H 0.126 0.874 33 H 0.080 0.920 34 H 0.127 0.873 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.251 0.749 39 H 0.258 0.742 40 H 0.186 0.814 41 H 0.216 0.784 42 H 0.039 0.961 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.130 0.870 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.225 -27.601 1.003 30.623 hybrid contribution 0.034 0.312 -1.101 1.144 sum -13.191 -27.289 -0.097 30.310 Atomic orbital electron populations 1.22104 0.95112 1.03150 1.01797 1.21497 0.94875 0.80663 1.03672 1.48521 1.64596 1.14418 1.07471 1.22239 1.04073 0.88456 0.86641 1.22279 1.00810 0.95604 0.92615 0.86174 1.21263 0.98730 0.77321 0.99880 1.44819 1.38092 1.07851 1.47086 1.15763 0.81998 0.79826 0.81277 1.90847 1.41034 1.78217 1.37762 1.41399 1.36825 1.05184 1.45519 1.19091 0.93478 0.88605 0.95884 1.21692 1.02789 1.00197 1.07585 1.23163 1.00306 0.87572 0.98355 1.48797 1.25037 1.09139 1.29837 1.19310 0.95352 0.71715 0.98198 1.21391 1.46934 0.96965 0.93350 0.92919 1.25723 0.94594 0.96000 1.01825 1.69986 1.47146 1.05987 1.32761 0.85420 0.78722 0.77446 0.78951 1.19859 1.19849 1.19557 1.77241 1.13075 1.07247 1.20523 1.22519 1.04311 0.94113 0.98086 1.21485 0.75849 0.89157 0.84078 1.90703 1.55945 1.76845 1.23439 0.91077 0.90069 0.94738 0.87425 0.91968 0.87287 0.89101 0.89871 0.91315 0.74884 0.74211 0.81402 0.78382 0.96094 0.92432 0.91876 0.86990 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 10.24 71.98 0.74 -0.56 16 2 C 0.11 1.03 6.66 86.38 0.57 1.60 16 3 N -0.62 -6.58 2.93 -817.99 -2.40 -8.98 16 4 C 0.11 0.41 6.91 86.83 0.60 1.01 16 5 C -0.09 -0.41 3.16 -9.74 -0.03 -0.44 16 6 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 7 C 0.15 1.33 4.98 86.38 0.43 1.76 16 8 N -0.72 -9.27 5.50 -478.52 -2.63 -11.90 16 9 C 0.71 17.43 8.53 179.05 1.53 18.96 16 10 O -0.60 -19.07 13.47 -3.99 -0.05 -19.12 16 11 N -0.64 -17.69 5.45 -321.24 -1.75 -19.44 16 12 C 0.29 11.02 8.11 133.31 1.08 12.10 16 13 C -0.29 -11.13 9.60 22.10 0.21 -10.92 16 14 C 0.05 2.12 11.44 83.52 0.96 3.07 16 15 N -0.35 -16.12 3.67 -351.83 -1.29 -17.41 16 16 C 0.27 14.12 6.26 85.63 0.54 14.65 16 17 C -0.55 -30.86 9.23 25.60 0.24 -30.63 16 18 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 19 C 0.02 1.05 5.46 84.66 0.46 1.51 16 20 N -0.92 -52.00 13.29 21.45 0.28 -51.72 16 21 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 25 N -0.35 -15.99 12.41 -54.44 -0.68 -16.67 16 26 C -0.15 -1.45 6.36 30.59 0.19 -1.25 16 27 C 0.51 8.64 8.02 87.90 0.71 9.34 16 28 O -0.59 -16.23 17.59 -3.02 -0.05 -16.28 16 29 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.03 0.45 8.14 -2.38 -0.02 0.43 16 32 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.06 0.82 7.92 -2.39 -0.02 0.80 16 34 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.09 0.22 7.89 -2.38 -0.02 0.20 16 36 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.07 0.76 7.93 -2.38 -0.02 0.74 16 38 H 0.41 2.90 8.49 -92.71 -0.79 2.11 16 39 H 0.42 9.06 8.84 -92.71 -0.82 8.24 16 40 H 0.17 6.19 5.91 -2.91 -0.02 6.17 16 41 H 0.20 6.10 8.06 -2.91 -0.02 6.08 16 42 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.06 2.91 8.07 -2.39 -0.02 2.89 16 44 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 45 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.11 1.11 7.76 -2.38 -0.02 1.09 16 Total: -1.00 -80.93 390.39 1.09 -79.84 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -0.59 Total: 15.94 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 8.22 Total: 20.21 kcal Atomic # 7 Polarization: -117.65 SS G_CDS: -8.47 Total: -126.12 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.11 Total: -35.40 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -80.93 1.09 -79.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593162761.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.876 kcal (2) G-P(sol) polarization free energy of solvation -80.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds