Wall clock time and date at job start Tue Mar 31 2020 19:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47601 * 2 1 4 4 C 1.46768 * 124.34879 * 89.99607 * 3 2 1 5 5 C 1.54480 * 105.55098 * 197.08340 * 4 3 2 6 6 H 1.09001 * 110.96924 * 216.42557 * 5 4 3 7 7 C 1.53001 * 110.96983 * 92.65987 * 5 4 3 8 8 N 1.46500 * 109.46956 * 175.00184 * 7 5 4 9 9 C 1.34776 * 120.00068 * 180.02562 * 8 7 5 10 10 O 1.21590 * 119.99684 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00259 * 180.02562 * 9 8 7 12 12 C 1.40197 * 120.00072 * 180.02562 * 11 9 8 13 13 C 1.40402 * 125.97214 * 359.97438 * 12 11 9 14 14 C 1.35245 * 107.86926 * 180.02562 * 13 12 11 15 15 N 1.34968 * 107.85564 * 359.97438 * 14 13 12 16 16 C 1.46502 * 125.97377 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.46989 * 125.00408 * 16 15 14 18 18 H 1.08000 * 119.99944 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00086 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00101 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99891 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47054 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47000 * 120.00060 * 21 19 17 24 24 H 1.48499 * 109.46823 * 240.00160 * 21 19 17 25 25 N 1.31206 * 125.97143 * 179.68913 * 12 11 9 26 26 C 1.54631 * 101.76472 * 334.54015 * 5 4 3 27 27 C 1.34621 * 124.47196 * 270.02849 * 3 2 1 28 28 O 1.21286 * 124.90539 * 359.55259 * 27 3 2 29 29 H 1.08994 * 109.46756 * 299.99998 * 1 2 3 30 30 H 1.08998 * 109.46730 * 59.99602 * 1 2 3 31 31 H 1.08999 * 109.46773 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47341 * 240.00121 * 2 1 3 33 33 H 1.08998 * 109.47560 * 120.00001 * 2 1 3 34 34 H 1.09002 * 110.24468 * 78.03845 * 4 3 2 35 35 H 1.09002 * 110.24463 * 316.12602 * 4 3 2 36 36 H 1.09001 * 109.46982 * 295.00095 * 7 5 4 37 37 H 1.08998 * 109.47052 * 55.00265 * 7 5 4 38 38 H 0.96999 * 120.00025 * 359.97438 * 8 7 5 39 39 H 0.96999 * 119.99834 * 359.97438 * 11 9 8 40 40 H 1.07997 * 126.06490 * 359.97438 * 13 12 11 41 41 H 1.07992 * 126.07660 * 179.97438 * 14 13 12 42 42 H 1.09005 * 109.47284 * 245.00197 * 16 15 14 43 43 H 1.08992 * 109.47161 * 5.00262 * 16 15 14 44 44 H 0.96993 * 120.00411 * 180.02562 * 20 19 17 45 45 H 1.09000 * 110.48694 * 143.47575 * 26 5 4 46 46 H 1.08994 * 110.49106 * 266.12244 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2117 5 6 2.3518 3.6353 0.7510 6 1 3.1112 4.1878 1.3043 7 6 0.9829 4.3050 0.8864 8 7 1.1003 5.7273 0.5555 9 6 0.0136 6.5230 0.6066 10 8 -1.0642 6.0602 0.9269 11 7 0.1215 7.8314 0.3017 12 6 -1.0088 8.6591 0.3554 13 6 -2.3076 8.2596 0.7085 14 6 -3.1096 9.3463 0.6382 15 7 -2.3518 10.3959 0.2564 16 6 -2.8216 11.7691 0.0568 17 6 -1.9985 12.7091 0.8995 18 1 -1.2051 12.3222 1.5218 19 6 -2.2583 14.0629 0.8760 20 7 -3.2248 14.5340 0.1186 21 14 -1.2376 15.2281 1.9200 22 1 -0.2212 14.4535 2.6764 23 1 -0.5570 16.2129 1.0412 24 1 -2.1235 15.9440 2.8728 25 7 -1.0366 9.9437 0.0896 26 6 2.7499 3.4854 -0.7357 27 6 2.2720 2.0997 -1.1098 28 8 2.1363 1.6946 -2.2449 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.2503 1.8640 1.6428 35 1 1.4942 2.0251 1.9391 36 1 0.2772 3.8304 0.2047 37 1 0.6261 4.1986 1.9109 38 1 1.9602 6.0966 0.3004 39 1 0.9812 8.2004 0.0459 40 1 -2.6124 7.2613 0.9860 41 1 -4.1683 9.3701 0.8501 42 1 -2.7191 12.0391 -0.9943 43 1 -3.8690 11.8410 0.3498 44 1 -3.4073 15.4864 0.1018 45 1 2.2481 4.2389 -1.3428 46 1 3.8312 3.5599 -0.8505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593162766.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:27 Heat of formation + Delta-G solvation = 22.194241 kcal Electronic energy + Delta-G solvation = -27833.446219 eV Core-core repulsion = 23760.247651 eV Total energy + Delta-G solvation = -4073.198568 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.10523 -40.63775 -39.52115 -37.20622 -35.65510 -34.66952 -33.73326 -33.24439 -30.99926 -30.12348 -29.27800 -28.50272 -26.82686 -25.91417 -23.77703 -23.09909 -21.81076 -21.40069 -20.43254 -19.88615 -19.68197 -18.04812 -17.18433 -17.10073 -16.57600 -16.47681 -16.02115 -15.77843 -15.47141 -14.86282 -14.54699 -14.50341 -14.33426 -14.11089 -14.01348 -13.71934 -13.67182 -13.44169 -12.82810 -12.68216 -12.56054 -12.33023 -12.22366 -12.18586 -11.95339 -11.73763 -11.54513 -11.50074 -11.05245 -10.88197 -10.42615 -10.26161 -10.15286 -10.10315 -9.69990 -9.48451 -9.32954 -9.17722 -8.63331 -8.09582 -7.40989 -6.23821 -4.28721 2.18111 2.32899 2.55595 2.66311 3.10571 3.22193 3.29685 3.35799 3.53999 3.80791 3.84611 3.89917 4.05110 4.26345 4.34665 4.41633 4.58518 4.70978 4.82364 4.93501 4.94972 5.02768 5.11323 5.14610 5.21017 5.28175 5.39334 5.45160 5.51796 5.59818 5.78222 5.81322 6.10216 6.14703 6.26421 6.54020 6.56416 6.66527 6.87340 7.00447 7.10664 7.49597 7.70257 7.77750 7.81987 7.96627 8.07527 8.55799 8.67095 8.81862 9.36850 10.84927 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026678 B = 0.001823 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.310559 B =15357.352272 C =15723.831938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.123 3.877 3 N -0.622 5.622 4 C 0.111 3.889 5 C -0.114 4.114 6 H 0.109 0.891 7 C 0.149 3.851 8 N -0.745 5.745 9 C 0.714 3.286 10 O -0.566 6.566 11 N -0.643 5.643 12 C 0.275 3.725 13 C -0.286 4.286 14 C 0.051 3.949 15 N -0.320 5.320 16 C 0.258 3.742 17 C -0.527 4.527 18 H 0.069 0.931 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.908 3.092 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.282 1.282 25 N -0.307 5.307 26 C -0.154 4.154 27 C 0.518 3.482 28 O -0.530 6.530 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.398 0.602 39 H 0.407 0.593 40 H 0.160 0.840 41 H 0.167 0.833 42 H 0.045 0.955 43 H 0.057 0.943 44 H 0.266 0.734 45 H 0.107 0.893 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.634 -26.842 3.426 29.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.001 3.999 3 N -0.358 5.358 4 C -0.013 4.013 5 C -0.133 4.133 6 H 0.127 0.873 7 C 0.024 3.976 8 N -0.402 5.402 9 C 0.413 3.587 10 O -0.441 6.441 11 N -0.293 5.293 12 C 0.021 3.979 13 C -0.318 4.318 14 C -0.099 4.099 15 N -0.102 5.102 16 C 0.140 3.860 17 C -0.565 4.565 18 H 0.088 0.912 19 C -0.142 4.142 20 N -0.534 5.534 21 Si 0.735 3.265 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.208 1.208 25 N -0.138 5.138 26 C -0.195 4.195 27 C 0.306 3.694 28 O -0.406 6.406 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.232 0.768 39 H 0.241 0.759 40 H 0.178 0.822 41 H 0.185 0.815 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.125 0.875 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 12.069 -26.281 2.692 29.045 hybrid contribution 0.815 0.482 0.587 1.114 sum 12.884 -25.799 3.279 29.023 Atomic orbital electron populations 1.22174 0.95499 1.02497 1.02839 1.21346 0.94584 0.80873 1.03093 1.48402 1.66175 1.14013 1.07178 1.22052 1.02316 0.89221 0.87669 1.22444 0.98518 0.95993 0.96374 0.87291 1.21166 0.95452 0.79046 1.01895 1.44946 1.10451 1.09271 1.75577 1.15584 0.84326 0.80246 0.78570 1.90879 1.25848 1.73936 1.53479 1.41355 1.10217 1.06649 1.71037 1.18775 0.87041 0.89630 1.02467 1.21503 0.91083 1.00975 1.18207 1.22556 0.98516 0.87619 1.01215 1.49056 1.03140 1.09741 1.48285 1.19743 0.95647 0.71796 0.98771 1.21302 1.17814 0.91276 1.26148 0.91246 1.24952 0.95420 0.98061 0.95728 1.69923 1.30156 1.14363 1.38916 0.86276 0.80005 0.80334 0.79895 1.19586 1.20716 1.20789 1.77321 1.00531 1.07893 1.28074 1.22492 1.03926 0.96210 0.96827 1.20956 0.76400 0.87707 0.84377 1.90745 1.53124 1.75585 1.21107 0.92155 0.92091 0.91344 0.90050 0.90286 0.90249 0.89665 0.91213 0.90587 0.76837 0.75860 0.82226 0.81538 0.93738 0.92534 0.92394 0.87488 0.87315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 10.24 37.16 0.38 -0.65 16 2 C 0.12 0.70 6.66 -4.04 -0.03 0.67 16 3 N -0.62 -4.04 2.94 -172.35 -0.51 -4.54 16 4 C 0.11 0.39 6.89 -3.12 -0.02 0.37 16 5 C -0.11 -0.43 3.16 -88.99 -0.28 -0.71 16 6 H 0.11 0.18 8.14 -51.93 -0.42 -0.25 16 7 C 0.15 1.04 4.96 -4.04 -0.02 1.02 16 8 N -0.75 -6.29 5.35 -65.23 -0.35 -6.63 16 9 C 0.71 9.91 8.53 -86.92 -0.74 9.16 16 10 O -0.57 -9.92 13.47 5.29 0.07 -9.85 16 11 N -0.64 -9.64 5.45 -15.51 -0.08 -9.73 16 12 C 0.27 5.50 8.11 -154.36 -1.25 4.24 16 13 C -0.29 -5.72 9.61 -39.83 -0.38 -6.10 16 14 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 15 N -0.32 -7.46 3.67 -62.56 -0.23 -7.69 16 16 C 0.26 6.57 6.26 -5.19 -0.03 6.53 16 17 C -0.53 -14.64 9.23 -34.44 -0.32 -14.96 16 18 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.90 -25.32 13.29 55.43 0.74 -24.58 16 21 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 25 N -0.31 -7.05 12.42 31.44 0.39 -6.66 16 26 C -0.15 -0.85 6.36 -26.74 -0.17 -1.02 16 27 C 0.52 4.75 8.03 -10.77 -0.09 4.66 16 28 O -0.53 -7.30 17.60 5.55 0.10 -7.20 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.55 7.93 -51.93 -0.41 0.14 16 33 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 35 H 0.09 0.24 7.88 -51.93 -0.41 -0.17 16 36 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 37 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 38 H 0.40 2.12 8.49 -40.82 -0.35 1.77 16 39 H 0.41 4.81 8.84 -40.82 -0.36 4.45 16 40 H 0.16 3.13 5.91 -52.49 -0.31 2.82 16 41 H 0.17 2.74 8.06 -52.49 -0.42 2.31 16 42 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 44 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.11 0.68 7.76 -51.93 -0.40 0.28 16 46 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 390.39 15.07 5.88 5.88 Total: -1.00 -36.89 390.39 -9.11 -46.00 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.85 Total: 3.13 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -3.25 Total: 5.62 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.04 Total: -59.84 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: 0.17 Total: -17.05 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.89 -9.11 -46.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593162766.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.194 kcal (2) G-P(sol) polarization free energy of solvation -36.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds