Wall clock time and date at job start Tue Mar 31 2020 19:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47601 * 2 1 4 4 C 1.46768 * 124.34879 * 89.99607 * 3 2 1 5 5 C 1.54480 * 105.55098 * 197.08340 * 4 3 2 6 6 H 1.09001 * 110.96924 * 216.42557 * 5 4 3 7 7 C 1.53001 * 110.96983 * 92.65987 * 5 4 3 8 8 N 1.46500 * 109.46956 * 175.00184 * 7 5 4 9 9 C 1.34776 * 120.00068 * 180.02562 * 8 7 5 10 10 O 1.21590 * 119.99684 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00259 * 180.02562 * 9 8 7 12 12 C 1.40197 * 120.00072 * 180.02562 * 11 9 8 13 13 C 1.40402 * 125.97214 * 359.97438 * 12 11 9 14 14 C 1.35245 * 107.86926 * 180.02562 * 13 12 11 15 15 N 1.34968 * 107.85564 * 359.97438 * 14 13 12 16 16 C 1.46502 * 125.97377 * 180.02562 * 15 14 13 17 17 C 1.50704 * 109.46989 * 125.00408 * 16 15 14 18 18 H 1.08000 * 119.99944 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00086 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00101 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99891 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47054 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47000 * 120.00060 * 21 19 17 24 24 H 1.48499 * 109.46823 * 240.00160 * 21 19 17 25 25 N 1.31206 * 125.97143 * 179.68913 * 12 11 9 26 26 C 1.54631 * 101.76472 * 334.54015 * 5 4 3 27 27 C 1.34621 * 124.47196 * 270.02849 * 3 2 1 28 28 O 1.21286 * 124.90539 * 359.55259 * 27 3 2 29 29 H 1.08994 * 109.46756 * 299.99998 * 1 2 3 30 30 H 1.08998 * 109.46730 * 59.99602 * 1 2 3 31 31 H 1.08999 * 109.46773 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47341 * 240.00121 * 2 1 3 33 33 H 1.08998 * 109.47560 * 120.00001 * 2 1 3 34 34 H 1.09002 * 110.24468 * 78.03845 * 4 3 2 35 35 H 1.09002 * 110.24463 * 316.12602 * 4 3 2 36 36 H 1.09001 * 109.46982 * 295.00095 * 7 5 4 37 37 H 1.08998 * 109.47052 * 55.00265 * 7 5 4 38 38 H 0.96999 * 120.00025 * 359.97438 * 8 7 5 39 39 H 0.96999 * 119.99834 * 359.97438 * 11 9 8 40 40 H 1.07997 * 126.06490 * 359.97438 * 13 12 11 41 41 H 1.07992 * 126.07660 * 179.97438 * 14 13 12 42 42 H 1.09005 * 109.47284 * 245.00197 * 16 15 14 43 43 H 1.08992 * 109.47161 * 5.00262 * 16 15 14 44 44 H 0.96993 * 120.00411 * 180.02562 * 20 19 17 45 45 H 1.09000 * 110.48694 * 143.47575 * 26 5 4 46 46 H 1.08994 * 110.49106 * 266.12244 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2117 5 6 2.3518 3.6353 0.7510 6 1 3.1112 4.1878 1.3043 7 6 0.9829 4.3050 0.8864 8 7 1.1003 5.7273 0.5555 9 6 0.0136 6.5230 0.6066 10 8 -1.0642 6.0602 0.9269 11 7 0.1215 7.8314 0.3017 12 6 -1.0088 8.6591 0.3554 13 6 -2.3076 8.2596 0.7085 14 6 -3.1096 9.3463 0.6382 15 7 -2.3518 10.3959 0.2564 16 6 -2.8216 11.7691 0.0568 17 6 -1.9985 12.7091 0.8995 18 1 -1.2051 12.3222 1.5218 19 6 -2.2583 14.0629 0.8760 20 7 -3.2248 14.5340 0.1186 21 14 -1.2376 15.2281 1.9200 22 1 -0.2212 14.4535 2.6764 23 1 -0.5570 16.2129 1.0412 24 1 -2.1235 15.9440 2.8728 25 7 -1.0366 9.9437 0.0896 26 6 2.7499 3.4854 -0.7357 27 6 2.2720 2.0997 -1.1098 28 8 2.1363 1.6946 -2.2449 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.2503 1.8640 1.6428 35 1 1.4942 2.0251 1.9391 36 1 0.2772 3.8304 0.2047 37 1 0.6261 4.1986 1.9109 38 1 1.9602 6.0966 0.3004 39 1 0.9812 8.2004 0.0459 40 1 -2.6124 7.2613 0.9860 41 1 -4.1683 9.3701 0.8501 42 1 -2.7191 12.0391 -0.9943 43 1 -3.8690 11.8410 0.3498 44 1 -3.4073 15.4864 0.1018 45 1 2.2481 4.2389 -1.3428 46 1 3.8312 3.5599 -0.8505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593162766.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:26 Heat of formation + Delta-G solvation = -4.254854 kcal Electronic energy + Delta-G solvation = -27834.593138 eV Core-core repulsion = 23760.247651 eV Total energy + Delta-G solvation = -4074.345487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.21385 -41.60340 -40.73957 -37.93981 -36.47467 -36.02024 -35.26355 -34.31822 -32.67963 -30.97368 -30.71881 -29.04477 -28.51411 -26.73232 -24.92319 -24.27343 -23.04331 -21.95142 -21.94477 -21.17069 -20.36184 -19.14746 -18.68225 -18.27020 -17.65748 -17.54061 -17.00668 -16.78047 -16.48735 -16.24352 -15.94052 -15.55755 -15.43922 -15.11163 -14.83525 -14.52471 -14.44025 -14.20715 -14.18461 -14.00849 -13.78244 -13.65737 -13.18423 -13.08582 -12.91726 -12.72058 -12.65474 -12.37662 -12.28757 -12.02893 -12.01854 -11.96348 -11.62215 -11.36974 -11.11777 -10.83814 -10.71299 -10.20827 -9.71731 -9.69398 -9.03243 -8.31506 -6.45733 1.09027 1.15917 1.38535 1.39798 1.52989 1.55180 1.72623 2.07607 2.15130 2.37324 2.43829 2.99965 3.14081 3.38637 3.50326 3.65550 3.95924 4.00336 4.14304 4.26090 4.30029 4.42576 4.48943 4.61604 4.67030 4.72210 4.73610 4.81334 4.86214 4.89249 4.93021 4.96509 4.97455 5.03968 5.12854 5.18886 5.26433 5.46736 5.58556 5.63768 5.78652 5.91053 5.99972 6.14120 6.30891 6.65517 6.79337 7.15209 7.17895 7.24269 7.46306 8.76144 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026678 B = 0.001823 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.310559 B =15357.352272 C =15723.831938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.118 3.882 3 N -0.620 5.620 4 C 0.107 3.893 5 C -0.096 4.096 6 H 0.148 0.852 7 C 0.147 3.853 8 N -0.719 5.719 9 C 0.710 3.290 10 O -0.604 6.604 11 N -0.636 5.636 12 C 0.285 3.715 13 C -0.293 4.293 14 C 0.055 3.945 15 N -0.346 5.346 16 C 0.272 3.728 17 C -0.545 4.545 18 H 0.053 0.947 19 C 0.017 3.983 20 N -0.921 5.921 21 Si 0.973 3.027 22 H -0.273 1.273 23 H -0.274 1.274 24 H -0.271 1.271 25 N -0.347 5.347 26 C -0.149 4.149 27 C 0.500 3.500 28 O -0.592 6.592 29 H 0.066 0.934 30 H 0.027 0.973 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.043 0.957 37 H 0.080 0.920 38 H 0.417 0.583 39 H 0.422 0.578 40 H 0.166 0.834 41 H 0.200 0.800 42 H 0.021 0.979 43 H 0.058 0.942 44 H 0.272 0.728 45 H 0.096 0.904 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.640 -27.501 5.729 31.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.004 4.004 3 N -0.354 5.354 4 C -0.015 4.015 5 C -0.115 4.115 6 H 0.165 0.835 7 C 0.023 3.977 8 N -0.377 5.377 9 C 0.410 3.590 10 O -0.482 6.482 11 N -0.288 5.288 12 C 0.029 3.971 13 C -0.324 4.324 14 C -0.093 4.093 15 N -0.128 5.128 16 C 0.153 3.847 17 C -0.583 4.583 18 H 0.072 0.928 19 C -0.184 4.184 20 N -0.560 5.560 21 Si 0.798 3.202 22 H -0.198 1.198 23 H -0.199 1.199 24 H -0.196 1.196 25 N -0.178 5.178 26 C -0.189 4.189 27 C 0.290 3.710 28 O -0.473 6.473 29 H 0.085 0.915 30 H 0.047 0.953 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.115 0.885 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.254 0.746 39 H 0.259 0.741 40 H 0.183 0.817 41 H 0.216 0.784 42 H 0.039 0.961 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.114 0.886 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.136 -26.978 5.031 30.869 hybrid contribution 0.193 0.500 -0.120 0.550 sum 14.329 -26.477 4.911 30.504 Atomic orbital electron populations 1.22133 0.95943 1.03045 1.01426 1.21459 0.94192 0.80884 1.03837 1.48605 1.64716 1.14318 1.07714 1.22354 1.04416 0.88255 0.86449 1.22427 0.97153 0.96418 0.95456 0.83465 1.21312 0.97265 0.77789 1.01345 1.44797 1.09799 1.09298 1.73762 1.15811 0.85048 0.79958 0.78230 1.90847 1.27745 1.74437 1.55126 1.41368 1.09606 1.06744 1.71058 1.19086 0.88573 0.89214 1.00218 1.21680 0.91283 1.01091 1.18392 1.23147 0.99930 0.86670 0.99586 1.48811 1.03927 1.09527 1.50489 1.19337 0.95428 0.72997 0.96926 1.21434 1.17975 0.92316 1.26622 0.92838 1.25765 0.96418 0.99439 0.96748 1.70002 1.31176 1.15049 1.39808 0.85273 0.78468 0.78112 0.78387 1.19759 1.19905 1.19599 1.77239 1.00826 1.09438 1.30319 1.22513 1.05205 0.93442 0.97716 1.21686 0.75947 0.89312 0.84070 1.90702 1.55979 1.77036 1.23541 0.91535 0.95343 0.89928 0.91822 0.86963 0.87099 0.88471 0.93815 0.90138 0.74565 0.74083 0.81662 0.78357 0.96138 0.92425 0.91881 0.88583 0.84810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 10.24 71.98 0.74 -1.24 16 2 C 0.12 1.22 6.66 86.38 0.58 1.79 16 3 N -0.62 -7.11 2.94 -817.66 -2.40 -9.52 16 4 C 0.11 0.35 6.89 86.83 0.60 0.95 16 5 C -0.10 -0.36 3.16 -9.73 -0.03 -0.39 16 6 H 0.15 -0.40 8.14 -2.39 -0.02 -0.42 16 7 C 0.15 1.72 4.96 86.38 0.43 2.15 16 8 N -0.72 -10.43 5.35 -478.54 -2.56 -12.99 16 9 C 0.71 18.75 8.53 179.06 1.53 20.28 16 10 O -0.60 -20.73 13.47 -4.00 -0.05 -20.78 16 11 N -0.64 -18.39 5.45 -321.24 -1.75 -20.14 16 12 C 0.28 11.32 8.11 133.31 1.08 12.40 16 13 C -0.29 -11.62 9.61 22.11 0.21 -11.41 16 14 C 0.06 2.20 11.44 83.52 0.96 3.16 16 15 N -0.35 -16.35 3.67 -351.84 -1.29 -17.64 16 16 C 0.27 14.20 6.26 85.63 0.54 14.73 16 17 C -0.55 -30.78 9.23 25.60 0.24 -30.54 16 18 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 19 C 0.02 0.91 5.46 84.65 0.46 1.37 16 20 N -0.92 -52.30 13.29 21.45 0.28 -52.02 16 21 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 N -0.35 -16.12 12.42 -54.43 -0.68 -16.79 16 26 C -0.15 -1.33 6.36 30.59 0.19 -1.13 16 27 C 0.50 9.04 8.03 87.87 0.71 9.74 16 28 O -0.59 -17.27 17.60 -3.05 -0.05 -17.33 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.90 7.93 -2.39 -0.02 0.88 16 33 H 0.11 0.42 8.14 -2.39 -0.02 0.41 16 34 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 35 H 0.10 0.17 7.88 -2.39 -0.02 0.15 16 36 H 0.04 0.78 8.12 -2.39 -0.02 0.76 16 37 H 0.08 0.95 8.10 -2.39 -0.02 0.93 16 38 H 0.42 3.05 8.49 -92.71 -0.79 2.27 16 39 H 0.42 9.35 8.84 -92.71 -0.82 8.53 16 40 H 0.17 6.41 5.91 -2.91 -0.02 6.39 16 41 H 0.20 6.31 8.06 -2.91 -0.02 6.29 16 42 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 43 H 0.06 2.94 8.07 -2.39 -0.02 2.92 16 44 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 45 H 0.10 1.11 7.76 -2.39 -0.02 1.09 16 46 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -84.16 390.39 1.15 -83.01 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -0.59 Total: 16.87 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 8.22 Total: 21.87 kcal Atomic # 7 Polarization: -120.70 SS G_CDS: -8.40 Total: -129.09 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -0.11 Total: -38.11 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -84.16 1.15 -83.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593162766.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.753 kcal (2) G-P(sol) polarization free energy of solvation -84.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds