Wall clock time and date at job start Tue Mar 31 2020 19:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46503 * 109.47422 * 2 1 4 4 N 1.40067 * 126.09865 * 90.02270 * 3 2 1 5 5 C 1.30855 * 108.42538 * 179.97438 * 4 3 2 6 6 C 1.39693 * 108.45355 * 0.26593 * 5 4 3 7 7 C 1.35852 * 126.09780 * 270.00181 * 3 2 1 8 8 N 1.39205 * 126.27207 * 0.02562 * 7 3 2 9 9 C 1.34771 * 120.00138 * 179.97438 * 8 7 3 10 10 O 1.21399 * 119.99878 * 359.97438 * 9 8 7 11 11 C 1.49302 * 120.00370 * 179.97438 * 9 8 7 12 12 O 1.21366 * 119.99712 * 353.51202 * 11 9 8 13 13 N 1.34784 * 120.00462 * 173.50286 * 11 9 8 14 14 C 1.47071 * 120.88403 * 181.20037 * 13 11 9 15 15 C 1.53701 * 108.27803 * 128.75726 * 14 13 11 16 16 N 1.46902 * 109.25189 * 54.08466 * 15 14 13 17 17 C 1.46898 * 110.99792 * 172.61162 * 16 15 14 18 18 C 1.50700 * 109.46858 * 294.30245 * 17 16 15 19 19 H 1.07996 * 120.00232 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99942 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99907 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99986 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47202 * 90.00383 * 22 20 18 24 24 H 1.48499 * 109.46950 * 210.00463 * 22 20 18 25 25 H 1.48499 * 109.47175 * 330.00146 * 22 20 18 26 26 C 1.46904 * 111.26606 * 296.75474 * 16 15 14 27 27 C 1.47078 * 120.87633 * 1.48522 * 13 11 9 28 28 H 1.08998 * 109.47463 * 60.00042 * 1 2 3 29 29 H 1.09001 * 109.47119 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47094 * 299.99944 * 1 2 3 31 31 H 1.09001 * 109.47094 * 240.00056 * 2 1 3 32 32 H 1.08998 * 109.47463 * 119.99958 * 2 1 3 33 33 H 1.08000 * 125.77301 * 180.02562 * 5 4 3 34 34 H 1.08006 * 126.06690 * 179.69937 * 6 5 4 35 35 H 0.96994 * 119.99912 * 359.97438 * 8 7 3 36 36 H 1.08994 * 109.63133 * 248.52915 * 14 13 11 37 37 H 1.08999 * 109.62850 * 9.11124 * 14 13 11 38 38 H 1.09003 * 109.64706 * 294.08652 * 15 14 13 39 39 H 1.08989 * 109.41988 * 173.94859 * 15 14 13 40 40 H 1.09000 * 109.47550 * 54.29950 * 17 16 15 41 41 H 1.08996 * 109.47090 * 174.29977 * 17 16 15 42 42 H 0.97001 * 119.99394 * 179.97438 * 21 20 18 43 43 H 1.08995 * 109.49596 * 303.14772 * 26 16 15 44 44 H 1.08999 * 109.48869 * 183.06772 * 26 16 15 45 45 H 1.09004 * 109.63234 * 350.89369 * 27 13 11 46 46 H 1.09005 * 109.63051 * 111.47250 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2939 2.1591 1.1318 5 6 2.7099 3.3344 0.7345 6 6 2.7103 3.3545 -0.6623 7 6 2.2851 2.1358 -1.0977 8 7 2.1441 1.7385 -2.4244 9 6 2.4464 2.5949 -3.4201 10 8 2.8413 3.7131 -3.1600 11 6 2.2957 2.1687 -4.8430 12 8 2.0150 1.0174 -5.1050 13 7 2.4711 3.0624 -5.8365 14 6 2.3017 2.6698 -7.2437 15 6 1.3454 3.6707 -7.9116 16 7 1.8497 5.0348 -7.7043 17 6 1.0636 6.0091 -8.4728 18 6 1.2632 5.7652 -9.9464 19 1 1.9097 4.9665 -10.2789 20 6 0.6213 6.5623 -10.8703 21 7 0.7959 6.3497 -12.1564 22 14 -0.4965 7.9442 -10.2953 23 1 0.2963 9.1902 -10.1406 24 1 -1.5702 8.1619 -11.2977 25 1 -1.1042 7.5789 -8.9905 26 6 1.8713 5.3838 -6.2775 27 6 2.8431 4.4546 -5.5424 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.9999 4.1521 1.3777 34 1 2.9987 4.1876 -1.2862 35 1 1.8282 0.8453 -2.6321 36 1 3.2677 2.6892 -7.7482 37 1 1.8784 1.6667 -7.2956 38 1 0.3526 3.5791 -7.4709 39 1 1.2903 3.4617 -8.9799 40 1 0.0075 5.8994 -8.2262 41 1 1.3919 7.0182 -8.2237 42 1 0.3439 6.9103 -12.8063 43 1 0.8713 5.2683 -5.8596 44 1 2.1975 6.4172 -6.1608 45 1 2.7782 4.6321 -4.4689 46 1 3.8603 4.6424 -5.8865 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602078668.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:08 Heat of formation + Delta-G solvation = 58.430852 kcal Electronic energy + Delta-G solvation = -29049.971808 eV Core-core repulsion = 24978.344577 eV Total energy + Delta-G solvation = -4071.627231 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.03108 -40.88318 -39.02369 -37.85971 -35.82566 -34.87460 -34.33443 -32.41544 -30.93919 -30.04908 -29.53331 -28.93094 -26.39471 -24.90578 -24.21574 -23.46812 -22.21994 -21.62047 -20.88525 -20.37553 -19.52681 -18.39368 -17.47287 -17.06487 -16.75494 -16.56882 -15.96152 -15.67928 -15.40219 -14.84909 -14.67581 -14.67402 -14.49649 -14.21444 -14.10234 -14.04955 -13.54888 -13.33116 -13.10945 -12.95874 -12.61812 -12.47036 -12.40867 -11.85477 -11.67642 -11.58227 -11.54331 -11.19905 -11.02358 -10.88744 -10.86880 -10.60459 -10.47554 -9.98544 -9.45400 -9.37224 -9.21600 -8.80192 -8.62700 -8.49792 -7.51801 -6.11347 -4.09539 0.77926 1.46942 1.70532 2.30975 2.57886 2.93647 3.11269 3.24451 3.32324 3.33627 3.86396 4.03076 4.36573 4.45474 4.61140 4.63238 4.66991 4.90521 4.99201 5.12873 5.18425 5.20739 5.26660 5.28441 5.42402 5.49603 5.54842 5.56438 5.67307 5.74013 5.76334 6.05560 6.09887 6.23411 6.32423 6.38457 6.45662 6.48659 6.68125 6.76265 6.87797 7.09850 7.30216 7.41294 7.49553 7.65233 7.76543 7.90810 8.56815 8.95727 9.49989 11.01438 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022078 B = 0.002357 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.898629 B =11874.253065 C =12302.217821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.125 3.875 3 N -0.386 5.386 4 N -0.287 5.287 5 C 0.060 3.940 6 C -0.273 4.273 7 C 0.300 3.700 8 N -0.622 5.622 9 C 0.521 3.479 10 O -0.471 6.471 11 C 0.510 3.490 12 O -0.530 6.530 13 N -0.563 5.563 14 C 0.111 3.889 15 C 0.051 3.949 16 N -0.528 5.528 17 C 0.162 3.838 18 C -0.513 4.513 19 H 0.082 0.918 20 C 0.069 3.931 21 N -0.898 5.898 22 Si 0.875 3.125 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.269 1.269 26 C 0.039 3.961 27 C 0.058 3.942 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.188 0.812 34 H 0.175 0.825 35 H 0.422 0.578 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.027 0.973 39 H 0.106 0.894 40 H -0.011 1.011 41 H 0.027 0.973 42 H 0.264 0.736 43 H 0.026 0.974 44 H 0.084 0.916 45 H 0.147 0.853 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.201 -11.299 24.554 27.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.004 3.996 3 N -0.175 5.175 4 N -0.109 5.109 5 C -0.126 4.126 6 C -0.304 4.304 7 C 0.081 3.919 8 N -0.271 5.271 9 C 0.304 3.696 10 O -0.344 6.344 11 C 0.291 3.709 12 O -0.408 6.408 13 N -0.295 5.295 14 C -0.011 4.011 15 C -0.078 4.078 16 N -0.253 5.253 17 C 0.036 3.964 18 C -0.551 4.551 19 H 0.100 0.900 20 C -0.133 4.133 21 N -0.537 5.537 22 Si 0.702 3.298 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.193 1.193 26 C -0.091 4.091 27 C -0.063 4.063 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.120 0.880 33 H 0.205 0.795 34 H 0.192 0.808 35 H 0.260 0.740 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.045 0.955 39 H 0.125 0.875 40 H 0.007 0.993 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.044 0.956 44 H 0.103 0.897 45 H 0.164 0.836 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.452 -11.883 25.134 27.909 hybrid contribution -1.483 0.852 -0.489 1.779 sum 0.969 -11.031 24.645 27.018 Atomic orbital electron populations 1.22224 0.94013 1.03396 1.03460 1.21695 0.95465 0.77864 1.04599 1.48933 1.54321 1.12281 1.01966 1.77450 1.23212 1.04706 1.05496 1.23798 0.98292 0.95606 0.94944 1.21735 1.15631 0.97963 0.95115 1.18088 1.01486 0.92494 0.79816 1.42462 1.64303 1.18374 1.01947 1.20477 0.77819 0.84585 0.86706 1.90365 1.42657 1.18833 1.82526 1.19376 0.80268 0.86032 0.85265 1.90770 1.48410 1.17918 1.83671 1.48187 1.63683 1.11248 1.06419 1.22221 1.01552 0.99361 0.77918 1.22464 0.94231 0.88695 1.02402 1.61946 1.55202 1.02354 1.05796 1.20180 0.90487 0.91007 0.94693 1.21003 1.28607 1.17720 0.87754 0.90045 1.24899 0.96339 0.97232 0.94789 1.69889 1.43569 1.39774 1.00451 0.86868 0.81021 0.83106 0.78787 1.20071 1.21184 1.19336 1.22469 0.97328 0.99346 0.89913 1.23398 0.99345 0.77904 1.05628 0.92073 0.90144 0.91279 0.89370 0.88037 0.79495 0.80755 0.74019 0.89694 0.88830 0.95526 0.87546 0.99344 0.95529 0.92586 0.95570 0.89727 0.83627 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 10.24 37.15 0.38 -0.55 16 2 C 0.12 0.74 6.99 -4.04 -0.03 0.72 16 3 N -0.39 -3.68 3.64 -60.29 -0.22 -3.90 16 4 N -0.29 -3.10 12.56 30.59 0.38 -2.71 16 5 C 0.06 0.58 12.00 -17.42 -0.21 0.37 16 6 C -0.27 -2.97 9.65 -39.77 -0.38 -3.35 16 7 C 0.30 3.15 7.68 -152.85 -1.17 1.97 16 8 N -0.62 -6.03 5.40 -11.80 -0.06 -6.09 16 9 C 0.52 6.03 7.76 -11.66 -0.09 5.94 16 10 O -0.47 -5.82 10.16 5.45 0.06 -5.76 16 11 C 0.51 6.71 7.77 -11.65 -0.09 6.62 16 12 O -0.53 -7.62 15.95 5.48 0.09 -7.53 16 13 N -0.56 -7.91 3.00 -172.75 -0.52 -8.43 16 14 C 0.11 1.65 6.62 -3.37 -0.02 1.62 16 15 C 0.05 0.91 5.47 -3.46 -0.02 0.89 16 16 N -0.53 -10.37 4.62 -235.47 -1.09 -11.46 16 17 C 0.16 3.77 3.79 -4.98 -0.02 3.75 16 18 C -0.51 -13.98 8.96 -34.44 -0.31 -14.29 16 19 H 0.08 2.40 7.37 -52.49 -0.39 2.01 16 20 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 21 N -0.90 -26.84 13.96 55.43 0.77 -26.06 16 22 Si 0.87 20.99 27.47 -169.99 -4.67 16.32 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 26 C 0.04 0.62 5.62 -3.70 -0.02 0.60 16 27 C 0.06 0.80 6.35 -3.60 -0.02 0.77 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.37 7.52 -51.93 -0.39 -0.02 16 32 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.19 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.18 1.96 5.83 -52.48 -0.31 1.66 16 35 H 0.42 3.31 7.48 -40.82 -0.31 3.01 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.09 1.32 7.07 -51.93 -0.37 0.95 16 38 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.11 2.10 6.67 -51.94 -0.35 1.76 16 40 H -0.01 -0.27 7.18 -51.93 -0.37 -0.64 16 41 H 0.03 0.62 7.40 -51.93 -0.38 0.23 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.08 1.29 7.99 -51.93 -0.41 0.87 16 45 H 0.15 1.87 3.92 -56.55 -0.22 1.65 16 46 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 371.81 15.07 5.60 5.60 Total: -1.00 -32.50 371.81 -8.23 -40.72 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -6.47 Total: 2.37 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -2.11 Total: 6.93 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: -0.73 Total: -58.65 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.14 Total: -13.29 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.50 -8.23 -40.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602078668.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.154 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds