Wall clock time and date at job start Tue Mar 31 2020 19:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46503 * 109.47422 * 2 1 4 4 N 1.40067 * 126.09865 * 90.02270 * 3 2 1 5 5 C 1.30855 * 108.42538 * 179.97438 * 4 3 2 6 6 C 1.39693 * 108.45355 * 0.26593 * 5 4 3 7 7 C 1.35852 * 126.09780 * 270.00181 * 3 2 1 8 8 N 1.39205 * 126.27207 * 0.02562 * 7 3 2 9 9 C 1.34771 * 120.00138 * 179.97438 * 8 7 3 10 10 O 1.21399 * 119.99878 * 359.97438 * 9 8 7 11 11 C 1.49302 * 120.00370 * 179.97438 * 9 8 7 12 12 O 1.21366 * 119.99712 * 353.51202 * 11 9 8 13 13 N 1.34784 * 120.00462 * 173.50286 * 11 9 8 14 14 C 1.47071 * 120.88403 * 181.20037 * 13 11 9 15 15 C 1.53701 * 108.27803 * 128.75726 * 14 13 11 16 16 N 1.46902 * 109.25189 * 54.08466 * 15 14 13 17 17 C 1.46898 * 110.99792 * 172.61162 * 16 15 14 18 18 C 1.50700 * 109.46858 * 294.30245 * 17 16 15 19 19 H 1.07996 * 120.00232 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99942 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99907 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99986 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.47202 * 90.00383 * 22 20 18 24 24 H 1.48499 * 109.46950 * 210.00463 * 22 20 18 25 25 H 1.48499 * 109.47175 * 330.00146 * 22 20 18 26 26 C 1.46904 * 111.26606 * 296.75474 * 16 15 14 27 27 C 1.47078 * 120.87633 * 1.48522 * 13 11 9 28 28 H 1.08998 * 109.47463 * 60.00042 * 1 2 3 29 29 H 1.09001 * 109.47119 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47094 * 299.99944 * 1 2 3 31 31 H 1.09001 * 109.47094 * 240.00056 * 2 1 3 32 32 H 1.08998 * 109.47463 * 119.99958 * 2 1 3 33 33 H 1.08000 * 125.77301 * 180.02562 * 5 4 3 34 34 H 1.08006 * 126.06690 * 179.69937 * 6 5 4 35 35 H 0.96994 * 119.99912 * 359.97438 * 8 7 3 36 36 H 1.08994 * 109.63133 * 248.52915 * 14 13 11 37 37 H 1.08999 * 109.62850 * 9.11124 * 14 13 11 38 38 H 1.09003 * 109.64706 * 294.08652 * 15 14 13 39 39 H 1.08989 * 109.41988 * 173.94859 * 15 14 13 40 40 H 1.09000 * 109.47550 * 54.29950 * 17 16 15 41 41 H 1.08996 * 109.47090 * 174.29977 * 17 16 15 42 42 H 0.97001 * 119.99394 * 179.97438 * 21 20 18 43 43 H 1.08995 * 109.49596 * 303.14772 * 26 16 15 44 44 H 1.08999 * 109.48869 * 183.06772 * 26 16 15 45 45 H 1.09004 * 109.63234 * 350.89369 * 27 13 11 46 46 H 1.09005 * 109.63051 * 111.47250 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2939 2.1591 1.1318 5 6 2.7099 3.3344 0.7345 6 6 2.7103 3.3545 -0.6623 7 6 2.2851 2.1358 -1.0977 8 7 2.1441 1.7385 -2.4244 9 6 2.4464 2.5949 -3.4201 10 8 2.8413 3.7131 -3.1600 11 6 2.2957 2.1687 -4.8430 12 8 2.0150 1.0174 -5.1050 13 7 2.4711 3.0624 -5.8365 14 6 2.3017 2.6698 -7.2437 15 6 1.3454 3.6707 -7.9116 16 7 1.8497 5.0348 -7.7043 17 6 1.0636 6.0091 -8.4728 18 6 1.2632 5.7652 -9.9464 19 1 1.9097 4.9665 -10.2789 20 6 0.6213 6.5623 -10.8703 21 7 0.7959 6.3497 -12.1564 22 14 -0.4965 7.9442 -10.2953 23 1 0.2963 9.1902 -10.1406 24 1 -1.5702 8.1619 -11.2977 25 1 -1.1042 7.5789 -8.9905 26 6 1.8713 5.3838 -6.2775 27 6 2.8431 4.4546 -5.5424 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.9999 4.1521 1.3777 34 1 2.9987 4.1876 -1.2862 35 1 1.8282 0.8453 -2.6321 36 1 3.2677 2.6892 -7.7482 37 1 1.8784 1.6667 -7.2956 38 1 0.3526 3.5791 -7.4709 39 1 1.2903 3.4617 -8.9799 40 1 0.0075 5.8994 -8.2262 41 1 1.3919 7.0182 -8.2237 42 1 0.3439 6.9103 -12.8063 43 1 0.8713 5.2683 -5.8596 44 1 2.1975 6.4172 -6.1608 45 1 2.7782 4.6321 -4.4689 46 1 3.8603 4.6424 -5.8865 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602078668.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:07 Heat of formation + Delta-G solvation = 34.941334 kcal Electronic energy + Delta-G solvation = -29050.990390 eV Core-core repulsion = 24978.344577 eV Total energy + Delta-G solvation = -4072.645813 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.86299 -41.82408 -40.08880 -39.12831 -36.82697 -35.82894 -35.27561 -34.40188 -32.20669 -30.85499 -30.59205 -30.15076 -27.83535 -26.13031 -24.86003 -24.60713 -23.47436 -22.92558 -21.95784 -21.28156 -20.62786 -19.31583 -18.91054 -18.33734 -18.05894 -17.51187 -16.95114 -16.51377 -16.45643 -16.20974 -16.08232 -15.80077 -15.62039 -15.32498 -15.17531 -15.02031 -14.86498 -14.45963 -14.33290 -14.02755 -13.70881 -13.53409 -13.29460 -12.99228 -12.88814 -12.84054 -12.45940 -12.41937 -12.28182 -12.25194 -12.17766 -11.96500 -11.85656 -11.67407 -11.46274 -10.77809 -10.34308 -10.06685 -9.99504 -9.30355 -9.08579 -8.27571 -6.30857 -0.16061 0.60336 0.89255 1.36125 1.36986 1.46960 1.54938 1.76399 2.01004 2.18601 2.34728 2.88349 3.04953 3.16340 3.51161 3.88298 3.99366 4.01495 4.04632 4.13526 4.19690 4.22356 4.29215 4.36613 4.38378 4.53500 4.61858 4.71526 4.78892 4.81360 4.82617 4.93801 4.95902 5.00312 5.04309 5.13650 5.15266 5.23684 5.52433 5.62896 5.73344 5.86818 5.92842 6.07332 6.27688 6.40823 6.60165 6.61833 6.67407 6.75572 7.32820 8.88509 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022078 B = 0.002357 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.898629 B =11874.253065 C =12302.217821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.115 3.885 3 N -0.384 5.384 4 N -0.308 5.308 5 C 0.059 3.941 6 C -0.289 4.289 7 C 0.291 3.709 8 N -0.608 5.608 9 C 0.527 3.473 10 O -0.478 6.478 11 C 0.515 3.485 12 O -0.540 6.540 13 N -0.570 5.570 14 C 0.123 3.877 15 C 0.055 3.945 16 N -0.541 5.541 17 C 0.171 3.829 18 C -0.515 4.515 19 H 0.043 0.957 20 C 0.009 3.991 21 N -0.946 5.946 22 Si 0.945 3.055 23 H -0.264 1.264 24 H -0.284 1.284 25 H -0.253 1.253 26 C 0.038 3.962 27 C 0.069 3.931 28 H 0.051 0.949 29 H 0.103 0.897 30 H 0.054 0.946 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.215 0.785 34 H 0.170 0.830 35 H 0.431 0.569 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.024 0.976 39 H 0.078 0.922 40 H -0.015 1.015 41 H 0.033 0.967 42 H 0.266 0.734 43 H 0.027 0.973 44 H 0.095 0.905 45 H 0.162 0.838 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.897 -11.332 27.138 29.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.005 4.005 3 N -0.173 5.173 4 N -0.130 5.130 5 C -0.126 4.126 6 C -0.320 4.320 7 C 0.071 3.929 8 N -0.257 5.257 9 C 0.310 3.690 10 O -0.352 6.352 11 C 0.297 3.703 12 O -0.418 6.418 13 N -0.302 5.302 14 C 0.001 3.999 15 C -0.074 4.074 16 N -0.266 5.266 17 C 0.044 3.956 18 C -0.553 4.553 19 H 0.062 0.938 20 C -0.188 4.188 21 N -0.587 5.587 22 Si 0.769 3.231 23 H -0.189 1.189 24 H -0.210 1.210 25 H -0.177 1.177 26 C -0.091 4.091 27 C -0.052 4.052 28 H 0.070 0.930 29 H 0.122 0.878 30 H 0.073 0.927 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.232 0.768 34 H 0.187 0.813 35 H 0.271 0.729 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.042 0.958 39 H 0.096 0.904 40 H 0.003 0.997 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.045 0.955 44 H 0.114 0.886 45 H 0.178 0.822 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.150 -11.959 27.766 30.308 hybrid contribution -1.346 0.734 -1.257 1.983 sum 0.804 -11.225 26.509 28.799 Atomic orbital electron populations 1.22185 0.93538 1.04536 1.02237 1.22052 0.95854 0.76453 1.06157 1.49203 1.53743 1.13117 1.01261 1.77414 1.23860 1.05358 1.06367 1.24247 0.97486 0.95984 0.94883 1.21840 1.16251 0.98141 0.95787 1.18146 1.01818 0.92858 0.80072 1.42242 1.63527 1.18456 1.01470 1.20033 0.78125 0.84673 0.86191 1.90348 1.43293 1.19187 1.82363 1.19552 0.79407 0.85611 0.85753 1.90767 1.48643 1.18389 1.84035 1.48176 1.64195 1.11652 1.06158 1.21996 1.00812 0.98614 0.78492 1.22363 0.95103 0.88820 1.01105 1.61858 1.54560 1.02264 1.07894 1.19943 0.90731 0.92279 0.92598 1.21242 1.27413 1.16372 0.90304 0.93832 1.25808 0.98141 1.00158 0.94733 1.70043 1.45284 1.41431 1.01918 0.85753 0.78881 0.79735 0.78778 1.18915 1.21015 1.17737 1.22588 0.98166 1.00731 0.87572 1.23397 0.98697 0.77106 1.05993 0.93014 0.87838 0.92672 0.87353 0.87000 0.76843 0.81296 0.72929 0.89483 0.87924 0.95766 0.90376 0.99716 0.94869 0.92468 0.95500 0.88637 0.82198 0.89850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 10.24 71.98 0.74 -0.75 16 2 C 0.11 1.12 6.99 86.38 0.60 1.73 16 3 N -0.38 -6.64 3.64 -344.67 -1.25 -7.90 16 4 N -0.31 -6.16 12.56 -57.13 -0.72 -6.88 16 5 C 0.06 1.05 12.00 85.19 1.02 2.07 16 6 C -0.29 -5.84 9.65 22.15 0.21 -5.62 16 7 C 0.29 5.59 7.68 131.25 1.01 6.59 16 8 N -0.61 -10.56 5.40 -309.58 -1.67 -12.24 16 9 C 0.53 11.15 7.76 87.22 0.68 11.83 16 10 O -0.48 -10.85 10.16 -3.40 -0.03 -10.89 16 11 C 0.51 12.60 7.77 87.22 0.68 13.28 16 12 O -0.54 -14.52 15.95 -3.30 -0.05 -14.57 16 13 N -0.57 -15.10 3.00 -818.80 -2.46 -17.56 16 14 C 0.12 3.56 6.62 86.51 0.57 4.14 16 15 C 0.05 1.99 5.47 86.54 0.47 2.46 16 16 N -0.54 -21.04 4.62 -898.88 -4.15 -25.20 16 17 C 0.17 7.90 3.79 85.56 0.32 8.22 16 18 C -0.51 -28.77 8.96 25.60 0.23 -28.54 16 19 H 0.04 2.69 7.37 -2.91 -0.02 2.67 16 20 C 0.01 0.52 5.47 84.65 0.46 0.98 16 21 N -0.95 -58.05 13.96 21.45 0.30 -57.75 16 22 Si 0.94 43.15 27.47 68.60 1.88 45.04 16 23 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 25 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 26 C 0.04 1.16 5.62 86.38 0.49 1.64 16 27 C 0.07 1.75 6.35 86.35 0.55 2.29 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.10 0.43 8.14 -2.39 -0.02 0.42 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.11 0.61 7.52 -2.39 -0.02 0.59 16 32 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.22 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.17 3.57 5.83 -2.91 -0.02 3.55 16 35 H 0.43 5.80 7.48 -92.71 -0.69 5.11 16 36 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.10 2.80 7.07 -2.39 -0.02 2.78 16 38 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 3.24 6.67 -2.39 -0.02 3.23 16 40 H -0.01 -0.69 7.18 -2.39 -0.02 -0.71 16 41 H 0.03 1.49 7.40 -2.39 -0.02 1.47 16 42 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 43 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.10 2.70 7.99 -2.39 -0.02 2.68 16 45 H 0.16 3.72 3.92 -75.61 -0.30 3.43 16 46 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 Total: -1.00 -70.47 371.81 -0.14 -70.61 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -0.02 Total: 17.00 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: 8.04 Total: 20.33 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -9.96 Total: -127.53 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.09 Total: -25.45 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.88 Total: 45.04 kcal Total: -70.47 -0.14 -70.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602078668.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.553 kcal (2) G-P(sol) polarization free energy of solvation -70.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds