Wall clock time and date at job start Tue Mar 31 2020 18:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47245 * 2 1 4 4 C 1.50701 * 109.47451 * 239.99612 * 2 1 3 5 5 H 1.07994 * 119.99825 * 275.00705 * 4 2 1 6 6 C 1.37879 * 119.99722 * 94.99803 * 4 2 1 7 7 N 1.31512 * 119.99597 * 184.91979 * 6 4 2 8 8 Si 1.86800 * 120.00229 * 4.92035 * 6 4 2 9 9 H 1.48499 * 109.47194 * 84.82620 * 8 6 4 10 10 H 1.48494 * 109.47018 * 204.82791 * 8 6 4 11 11 H 1.48504 * 109.46777 * 324.82695 * 8 6 4 12 12 N 1.46909 * 109.47176 * 119.99495 * 2 1 3 13 13 C 1.46897 * 111.00076 * 274.99917 * 12 2 1 14 14 C 1.50701 * 109.46768 * 179.97438 * 13 12 2 15 15 O 1.21275 * 120.00401 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99784 * 179.97438 * 14 13 12 17 17 C 1.47079 * 120.88123 * 179.97438 * 16 14 13 18 18 C 1.53238 * 108.52155 * 128.79585 * 17 16 14 19 19 N 1.46897 * 109.36023 * 53.81602 * 18 17 16 20 20 C 1.39853 * 110.99844 * 172.76274 * 19 18 17 21 21 C 1.38831 * 120.07684 * 299.72453 * 20 19 18 22 22 C 1.38153 * 119.94594 * 179.70232 * 21 20 19 23 23 C 1.38274 * 120.11419 * 0.57134 * 22 21 20 24 24 C 1.38288 * 120.15917 * 359.72891 * 23 22 21 25 25 C 1.38287 * 120.05053 * 359.97438 * 24 23 22 26 26 F 1.35093 * 120.05801 * 180.02562 * 25 24 23 27 27 C 1.46898 * 111.27324 * 296.93678 * 19 18 17 28 28 C 1.47083 * 120.88285 * 359.97438 * 16 14 13 29 29 H 1.09000 * 109.46761 * 55.05142 * 1 2 3 30 30 H 1.08994 * 109.46780 * 175.05962 * 1 2 3 31 31 H 1.09004 * 109.46872 * 295.05599 * 1 2 3 32 32 H 0.97000 * 119.99612 * 180.02562 * 7 6 4 33 33 H 1.00900 * 110.99573 * 151.04467 * 12 2 1 34 34 H 1.08997 * 109.47096 * 59.99989 * 13 12 2 35 35 H 1.08996 * 109.47188 * 299.99649 * 13 12 2 36 36 H 1.08998 * 109.62699 * 9.08682 * 17 16 14 37 37 H 1.08999 * 109.63297 * 248.50453 * 17 16 14 38 38 H 1.08998 * 109.49484 * 173.79200 * 18 17 16 39 39 H 1.08997 * 109.49374 * 293.84500 * 18 17 16 40 40 H 1.08000 * 120.02348 * 359.97438 * 21 20 19 41 41 H 1.07998 * 119.94205 * 180.27785 * 22 21 20 42 42 H 1.07996 * 119.92473 * 179.74558 * 23 22 21 43 43 H 1.07999 * 119.97885 * 179.97438 * 24 23 22 44 44 H 1.09000 * 109.47160 * 303.10254 * 27 19 18 45 45 H 1.08997 * 109.51355 * 183.05347 * 27 19 18 46 46 H 1.09000 * 109.62259 * 350.91601 * 28 16 14 47 47 H 1.09000 * 109.62783 * 111.49007 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.1355 -1.7855 -1.2289 6 6 2.3603 0.0120 -2.3580 7 7 2.7060 -0.6133 -3.4621 8 14 2.3136 1.8790 -2.3175 9 1 3.5991 2.3948 -1.7821 10 1 2.1059 2.3989 -3.6929 11 1 1.1985 2.3274 -1.4452 12 7 2.0197 -0.6924 1.1996 13 6 2.0825 0.2227 2.3469 14 6 2.5874 -0.5217 3.5561 15 8 2.8669 -1.6987 3.4706 16 7 2.7284 0.1207 4.7325 17 6 3.2189 -0.5869 5.9249 18 6 4.3746 0.2186 6.5280 19 7 3.9347 1.6004 6.7627 20 6 4.9064 2.3238 7.4615 21 6 5.3070 1.9105 8.7249 22 6 6.2716 2.6236 9.4101 23 6 6.8302 3.7551 8.8449 24 6 6.4301 4.1745 7.5893 25 6 5.4695 3.4622 6.8948 26 9 5.0789 3.8714 5.6681 27 6 3.5842 2.2695 5.5028 28 6 2.3957 1.5479 4.8580 29 1 -0.3633 0.5887 -0.8424 30 1 -0.3633 -1.0238 -0.0885 31 1 -0.3633 0.4352 0.9310 32 1 2.9370 -0.1050 -4.2553 33 1 2.9173 -1.1204 1.0288 34 1 1.0872 0.6165 2.5525 35 1 2.7589 1.0462 2.1182 36 1 3.5720 -1.5788 5.6427 37 1 2.4143 -0.6756 6.6550 38 1 4.6780 -0.2321 7.4729 39 1 5.2178 0.2178 5.8373 40 1 4.8680 1.0297 9.1697 41 1 6.5864 2.2995 10.3911 42 1 7.5811 4.3126 9.3850 43 1 6.8681 5.0589 7.1507 44 1 4.4383 2.2405 4.8262 45 1 3.3146 3.3062 5.7040 46 1 2.2046 1.9674 3.8703 47 1 1.5121 1.6641 5.4855 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602868556.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:41 Heat of formation + Delta-G solvation = -32.961804 kcal Electronic energy + Delta-G solvation = -29087.198927 eV Core-core repulsion = 24991.688652 eV Total energy + Delta-G solvation = -4095.510276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.29057 -41.50918 -40.36732 -38.64130 -37.50665 -35.77491 -34.49963 -32.71270 -31.81430 -31.39595 -30.94179 -28.16513 -27.37658 -26.51947 -25.15326 -23.30477 -23.23865 -22.44078 -21.55903 -20.28099 -19.21566 -18.74804 -18.26583 -17.64947 -17.34706 -17.21281 -17.09378 -16.62304 -16.45915 -16.15614 -15.70990 -15.53267 -15.30057 -15.25600 -14.92968 -14.73445 -14.52316 -14.26466 -14.20104 -13.92852 -13.36849 -13.29494 -13.21497 -12.94609 -12.89103 -12.68609 -12.61938 -12.54428 -12.44838 -12.28992 -12.16862 -11.82590 -11.81697 -11.11796 -10.89319 -10.89137 -10.70663 -9.83435 -9.74240 -9.15381 -8.91711 -8.32515 -6.39667 0.15902 0.25178 1.32241 1.34052 1.45557 1.55529 1.80980 2.31137 2.46024 2.71388 2.99801 3.20908 3.38669 3.59908 3.66054 3.76585 3.85964 4.00761 4.10314 4.15705 4.20407 4.31064 4.34434 4.35728 4.37187 4.40843 4.53464 4.54148 4.61483 4.73670 4.78444 4.87660 4.90499 4.96104 5.02259 5.06988 5.08947 5.28745 5.40582 5.47852 5.48612 5.64051 5.69006 5.74695 5.95374 6.12732 6.26179 6.44710 6.63960 6.75477 7.13348 7.29166 8.84650 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.017107 B = 0.002632 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.383256 B =10634.077156 C =11634.955157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.185 3.815 3 H 0.014 0.986 4 C -0.526 4.526 5 H 0.029 0.971 6 C 0.012 3.988 7 N -0.946 5.946 8 Si 0.946 3.054 9 H -0.268 1.268 10 H -0.285 1.285 11 H -0.237 1.237 12 N -0.680 5.680 13 C 0.041 3.959 14 C 0.517 3.483 15 O -0.567 6.567 16 N -0.616 5.616 17 C 0.116 3.884 18 C 0.052 3.948 19 N -0.484 5.484 20 C 0.065 3.935 21 C -0.114 4.114 22 C -0.100 4.100 23 C -0.115 4.115 24 C -0.138 4.138 25 C 0.021 3.979 26 F -0.148 7.148 27 C 0.033 3.967 28 C 0.105 3.895 29 H 0.043 0.957 30 H 0.037 0.963 31 H 0.055 0.945 32 H 0.267 0.733 33 H 0.336 0.664 34 H 0.117 0.883 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.119 0.881 39 H 0.030 0.970 40 H 0.152 0.848 41 H 0.161 0.839 42 H 0.158 0.842 43 H 0.144 0.856 44 H 0.042 0.958 45 H 0.112 0.888 46 H 0.102 0.898 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.254 13.968 32.184 35.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.077 3.923 3 H 0.032 0.968 4 C -0.564 4.564 5 H 0.048 0.952 6 C -0.186 4.186 7 N -0.586 5.586 8 Si 0.769 3.231 9 H -0.193 1.193 10 H -0.211 1.211 11 H -0.160 1.160 12 N -0.313 5.313 13 C -0.091 4.091 14 C 0.306 3.694 15 O -0.446 6.446 16 N -0.351 5.351 17 C -0.007 4.007 18 C -0.074 4.074 19 N -0.201 5.201 20 C -0.033 4.033 21 C -0.134 4.134 22 C -0.119 4.119 23 C -0.134 4.134 24 C -0.157 4.157 25 C -0.001 4.001 26 F -0.126 7.126 27 C -0.094 4.094 28 C -0.018 4.018 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.154 0.846 34 H 0.135 0.865 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.137 0.863 39 H 0.048 0.952 40 H 0.169 0.831 41 H 0.179 0.821 42 H 0.176 0.824 43 H 0.162 0.838 44 H 0.061 0.939 45 H 0.130 0.870 46 H 0.120 0.880 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.329 13.049 32.308 35.249 hybrid contribution 1.422 0.977 -1.843 2.524 sum 6.751 14.026 30.465 34.212 Atomic orbital electron populations 1.21765 0.96247 1.00395 0.99594 1.19507 0.93757 0.92104 0.86949 0.96826 1.21268 1.43789 0.94084 0.97295 0.95238 1.25995 0.93866 1.04144 0.94559 1.70068 1.47578 1.38235 1.02672 0.85762 0.80135 0.79245 0.77963 1.19345 1.21125 1.16013 1.60402 1.33691 1.32478 1.04705 1.21986 1.02870 0.94546 0.89725 1.20923 0.76778 0.87035 0.84668 1.90666 1.51324 1.17722 1.84841 1.48270 1.65889 1.11707 1.09252 1.21740 0.96885 0.95897 0.86141 1.22655 0.95817 0.86909 1.02058 1.59293 1.37150 1.02949 1.20660 1.19258 0.93378 0.94614 0.96026 1.21032 0.98623 1.02131 0.91638 1.21516 0.94982 0.94321 1.01032 1.21360 1.00661 0.97242 0.94106 1.21350 0.96902 1.00954 0.96524 1.18188 1.00546 0.99264 0.82099 1.91440 1.89612 1.90495 1.41085 1.23327 0.97650 0.99211 0.89253 1.22208 0.98159 0.78464 1.02966 0.93812 0.94403 0.92586 0.92355 0.84573 0.86541 0.91856 0.89737 0.88970 0.86281 0.95179 0.83066 0.82130 0.82421 0.83801 0.93922 0.87043 0.87955 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.12 9.42 71.98 0.68 -4.44 16 2 C 0.19 8.68 2.26 44.17 0.10 8.78 16 3 H 0.01 0.63 4.95 -2.38 -0.01 0.62 16 4 C -0.53 -30.62 8.84 25.60 0.23 -30.39 16 5 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 6 C 0.01 0.72 5.47 84.66 0.46 1.18 16 7 N -0.95 -59.61 13.96 21.45 0.30 -59.31 16 8 Si 0.95 43.25 26.99 68.60 1.85 45.10 16 9 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 10 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.24 -9.73 6.82 99.48 0.68 -9.05 16 12 N -0.68 -29.74 5.93 -499.45 -2.96 -32.70 16 13 C 0.04 1.34 4.33 85.56 0.37 1.71 16 14 C 0.52 17.06 7.75 87.66 0.68 17.74 16 15 O -0.57 -23.67 15.66 -3.01 -0.05 -23.72 16 16 N -0.62 -15.06 3.01 -817.89 -2.46 -17.52 16 17 C 0.12 2.39 6.60 86.35 0.57 2.96 16 18 C 0.05 0.89 5.46 86.38 0.47 1.36 16 19 N -0.48 -8.47 4.66 -694.06 -3.24 -11.70 16 20 C 0.07 1.08 5.56 38.20 0.21 1.29 16 21 C -0.11 -1.30 9.17 22.39 0.21 -1.10 16 22 C -0.10 -0.81 10.04 22.26 0.22 -0.58 16 23 C -0.12 -1.02 10.04 22.29 0.22 -0.80 16 24 C -0.14 -1.85 10.02 22.29 0.22 -1.63 16 25 C 0.02 0.37 6.96 22.48 0.16 0.53 16 26 F -0.15 -3.08 12.25 44.97 0.55 -2.53 16 27 C 0.03 0.62 3.98 86.39 0.34 0.97 16 28 C 0.10 1.93 6.51 86.36 0.56 2.49 16 29 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 1.94 7.36 -2.38 -0.02 1.92 16 32 H 0.27 15.69 8.31 -92.71 -0.77 14.91 16 33 H 0.34 16.17 8.05 -89.69 -0.72 15.45 16 34 H 0.12 3.27 7.22 -2.39 -0.02 3.25 16 35 H 0.06 1.92 7.57 -2.39 -0.02 1.90 16 36 H 0.08 2.06 7.06 -2.39 -0.02 2.04 16 37 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.12 1.41 6.92 -2.39 -0.02 1.39 16 39 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.15 1.18 7.43 -2.91 -0.02 1.16 16 41 H 0.16 0.34 8.06 -2.91 -0.02 0.32 16 42 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 43 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 44 H 0.04 0.97 6.89 -2.39 -0.02 0.96 16 45 H 0.11 1.98 6.40 -2.39 -0.02 1.96 16 46 H 0.10 1.75 6.02 -2.39 -0.01 1.74 16 47 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -75.94 372.99 -0.05 -75.99 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.24 Total: 26.33 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: 5.71 Total: 0.07 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -8.36 Total: -121.24 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.05 Total: -23.72 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.55 Total: -2.53 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.85 Total: 45.10 kcal Total: -75.94 -0.05 -75.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602868556.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.033 kcal (2) G-P(sol) polarization free energy of solvation -75.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds