Wall clock time and date at job start Tue Mar 31 2020 18:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47709 * 2 1 4 4 C 1.47840 * 110.99758 * 55.08431 * 3 2 1 5 5 C 1.54906 * 104.79755 * 146.36828 * 4 3 2 6 6 C 1.55141 * 101.64865 * 322.92979 * 5 4 3 7 7 C 1.47436 * 111.00464 * 175.93012 * 3 2 1 8 8 H 1.08998 * 109.89329 * 117.17323 * 7 3 2 9 9 C 1.53002 * 109.88602 * 356.14981 * 7 3 2 10 10 N 1.46506 * 109.47077 * 176.34159 * 9 7 3 11 11 C 1.34772 * 120.00139 * 174.97447 * 10 9 7 12 12 O 1.21370 * 119.99929 * 0.02562 * 11 10 9 13 13 C 1.49310 * 120.00233 * 179.97438 * 11 10 9 14 14 O 1.21406 * 119.99762 * 0.02562 * 13 11 10 15 15 N 1.34772 * 120.00233 * 179.97438 * 13 11 10 16 16 C 1.40294 * 119.99998 * 179.72745 * 15 13 11 17 17 C 1.40722 * 126.09858 * 0.02852 * 16 15 13 18 18 N 1.30873 * 108.37194 * 179.97438 * 17 16 15 19 19 N 1.40061 * 108.43764 * 359.97438 * 18 17 16 20 20 C 1.37299 * 126.05414 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99924 * 179.97438 * 20 19 18 22 22 C 1.39013 * 120.00065 * 359.97246 * 20 19 18 23 23 N 1.31278 * 119.99758 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99789 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47309 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.46932 * 120.00402 * 24 22 20 27 27 H 1.48507 * 109.46534 * 239.99609 * 24 22 20 28 28 C 1.35790 * 126.09743 * 179.71463 * 16 15 13 29 29 H 1.09006 * 109.46945 * 299.99959 * 1 2 3 30 30 H 1.09000 * 109.47403 * 59.99524 * 1 2 3 31 31 H 1.08994 * 109.47699 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46945 * 240.00041 * 2 1 3 33 33 H 1.09000 * 109.47403 * 120.00476 * 2 1 3 34 34 H 1.09001 * 110.37829 * 265.19791 * 4 3 2 35 35 H 1.09004 * 110.37428 * 27.53716 * 4 3 2 36 36 H 1.09003 * 110.99214 * 81.01977 * 5 4 3 37 37 H 1.08999 * 110.99047 * 204.80447 * 5 4 3 38 38 H 1.09002 * 110.70832 * 277.26793 * 6 5 4 39 39 H 1.09007 * 110.70208 * 154.03711 * 6 5 4 40 40 H 1.08998 * 109.47135 * 56.33776 * 9 7 3 41 41 H 1.08998 * 109.46946 * 296.33668 * 9 7 3 42 42 H 0.96997 * 119.99578 * 354.96892 * 10 9 7 43 43 H 0.97006 * 119.99977 * 359.97438 * 15 13 11 44 44 H 1.07994 * 125.81478 * 359.93444 * 17 16 15 45 45 H 0.97007 * 119.99843 * 180.02562 * 23 22 20 46 46 H 1.07995 * 126.25153 * 0.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.4516 2.1478 1.1318 5 6 2.5701 3.1374 1.5430 6 6 3.8430 2.2748 1.3368 7 6 3.4903 1.4254 0.0977 8 1 3.9092 1.8818 -0.7992 9 6 4.0400 0.0074 0.2651 10 7 5.5045 0.0491 0.2735 11 6 6.2093 -1.0747 0.5115 12 8 5.6309 -2.1214 0.7184 13 6 7.7018 -1.0323 0.5195 14 8 8.2804 0.0147 0.3121 15 7 8.4066 -2.1560 0.7580 16 6 9.8090 -2.1172 0.7599 17 6 10.6074 -0.9814 0.5301 18 7 11.8641 -1.3369 0.6132 19 7 11.9190 -2.7070 0.8986 20 6 13.0598 -3.4532 1.0627 21 1 12.9880 -4.5083 1.2820 22 6 14.3071 -2.8507 0.9465 23 7 14.3943 -1.5682 0.6804 24 14 15.8592 -3.8662 1.1690 25 1 15.4914 -5.2751 1.4600 26 1 16.6687 -3.8121 -0.0748 27 1 16.6513 -3.3182 2.2993 28 6 10.6381 -3.1678 0.9897 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.5618 2.6915 0.8144 35 1 1.2137 1.4789 1.9589 36 1 2.5795 4.0097 0.8894 37 1 2.4641 3.4348 2.5863 38 1 4.0212 1.6375 2.2030 39 1 4.7086 2.9067 1.1373 40 1 3.6990 -0.6145 -0.5626 41 1 3.6831 -0.4119 1.2057 42 1 5.9667 0.8856 0.1077 43 1 7.9443 -2.9923 0.9248 44 1 10.2448 0.0140 0.3202 45 1 15.2648 -1.1478 0.5989 46 1 10.3382 -4.1831 1.2034 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746407752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:10 Heat of formation + Delta-G solvation = 3.035677 kcal Electronic energy + Delta-G solvation = -28153.324717 eV Core-core repulsion = 24079.295371 eV Total energy + Delta-G solvation = -4074.029346 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.07464 -41.34127 -40.54150 -39.32246 -36.51451 -35.70435 -34.93698 -34.26330 -32.30552 -31.43389 -29.90918 -29.51029 -27.48524 -26.54759 -24.74209 -24.19379 -22.91136 -22.00711 -21.72218 -21.26817 -20.68039 -19.50104 -19.10705 -17.95350 -17.46187 -17.28995 -16.95896 -16.91244 -16.60974 -16.13504 -15.83701 -15.64320 -15.59408 -15.15267 -15.01819 -14.86117 -14.62715 -14.16789 -13.86463 -13.52525 -13.39134 -13.34231 -13.22488 -12.95776 -12.94489 -12.54747 -12.41711 -12.22460 -12.08021 -12.02951 -12.01051 -11.99441 -11.79246 -11.63639 -11.08910 -10.88017 -10.63305 -10.36457 -10.14793 -9.30655 -8.63110 -8.49515 -6.27139 0.25689 1.24990 1.28027 1.41771 1.59932 1.71360 2.02564 2.10899 2.52070 2.52651 2.85046 3.06682 3.07158 3.45477 3.52081 3.65446 3.75710 4.11703 4.17818 4.22038 4.34634 4.39136 4.39850 4.51745 4.54229 4.60603 4.67673 4.87743 4.92318 4.94969 4.97748 4.98707 5.00317 5.05951 5.09662 5.20570 5.21767 5.29828 5.30308 5.34873 5.88109 5.94981 5.95785 6.05856 6.23679 6.46041 6.66226 6.76341 7.05314 7.40728 7.62348 8.49908 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.035938 B = 0.001864 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.926064 B =15019.579025 C =15590.973210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.031 3.969 3 N -0.524 5.524 4 C 0.039 3.961 5 C -0.126 4.126 6 C -0.143 4.143 7 C 0.065 3.935 8 H 0.099 0.901 9 C 0.106 3.894 10 N -0.683 5.683 11 C 0.526 3.474 12 O -0.541 6.541 13 C 0.487 3.513 14 O -0.542 6.542 15 N -0.582 5.582 16 C -0.057 4.057 17 C -0.047 4.047 18 N -0.308 5.308 19 N -0.163 5.163 20 C -0.353 4.353 21 H 0.142 0.858 22 C -0.006 4.006 23 N -0.821 5.821 24 Si 1.020 2.980 25 H -0.241 1.241 26 H -0.272 1.272 27 H -0.272 1.272 28 C -0.074 4.074 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.038 0.962 34 H 0.089 0.911 35 H 0.049 0.951 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.420 0.580 43 H 0.423 0.577 44 H 0.177 0.823 45 H 0.278 0.722 46 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.454 4.027 1.047 24.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.097 4.097 3 N -0.249 5.249 4 C -0.088 4.088 5 C -0.164 4.164 6 C -0.181 4.181 7 C -0.043 4.043 8 H 0.116 0.884 9 C -0.017 4.017 10 N -0.337 5.337 11 C 0.306 3.694 12 O -0.419 6.419 13 C 0.268 3.732 14 O -0.420 6.420 15 N -0.227 5.227 16 C -0.164 4.164 17 C -0.223 4.223 18 N -0.139 5.139 19 N 0.069 4.931 20 C -0.484 4.484 21 H 0.159 0.841 22 C -0.218 4.218 23 N -0.449 5.449 24 Si 0.838 3.162 25 H -0.164 1.164 26 H -0.197 1.197 27 H -0.197 1.197 28 C -0.225 4.225 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.258 0.742 43 H 0.261 0.739 44 H 0.193 0.807 45 H 0.088 0.912 46 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -23.325 4.810 0.461 23.820 hybrid contribution 0.175 -0.856 0.778 1.170 sum -23.150 3.954 1.239 23.518 Atomic orbital electron populations 1.21806 0.93730 1.02422 1.02508 1.22439 0.97014 0.89107 1.01100 1.63935 1.04154 1.13307 1.43478 1.23157 0.98556 0.95595 0.91526 1.22703 0.93142 0.98022 1.02486 1.22933 0.99666 0.98638 0.96903 1.22656 0.88833 0.92889 0.99943 0.88355 1.22258 0.77614 0.99047 1.02786 1.45597 1.07671 1.11197 1.69228 1.19653 0.87067 0.84703 0.78016 1.90741 1.71507 1.30635 1.48977 1.20223 0.88618 0.84116 0.80219 1.90650 1.71322 1.30730 1.49275 1.42079 1.03328 1.11835 1.65428 1.17294 0.82495 0.94766 1.21799 1.24257 0.90307 0.99745 1.07974 1.78158 1.18012 0.91857 1.25911 1.44849 1.04543 1.05450 1.38306 1.20698 0.81911 0.94515 1.51245 0.84080 1.26886 1.03557 0.97112 0.94205 1.70380 1.26838 1.11786 1.35846 0.84527 0.74737 0.78644 0.78252 1.16415 1.19720 1.19723 1.22003 0.84084 0.99780 1.16660 0.92240 0.92013 0.91435 0.90442 0.94389 0.89242 0.93262 0.90114 0.89720 0.91691 0.89690 0.90292 0.91033 0.74246 0.73921 0.80675 0.91233 0.79512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.71 71.98 0.70 -0.88 16 2 C 0.03 0.42 4.45 86.30 0.38 0.80 16 3 N -0.52 -7.34 5.27 -860.58 -4.54 -11.87 16 4 C 0.04 0.45 5.34 86.77 0.46 0.91 16 5 C -0.13 -1.34 7.08 31.98 0.23 -1.12 16 6 C -0.14 -1.87 6.16 31.77 0.20 -1.67 16 7 C 0.07 0.94 3.49 45.26 0.16 1.10 16 8 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 9 C 0.11 1.87 3.71 86.38 0.32 2.19 16 10 N -0.68 -14.79 5.34 -464.54 -2.48 -17.27 16 11 C 0.53 14.98 7.88 87.23 0.69 15.67 16 12 O -0.54 -16.83 16.47 -3.31 -0.05 -16.88 16 13 C 0.49 17.03 7.85 87.23 0.69 17.71 16 14 O -0.54 -21.49 13.62 -3.42 -0.05 -21.54 16 15 N -0.58 -21.27 5.45 -305.33 -1.66 -22.93 16 16 C -0.06 -2.62 6.90 37.83 0.26 -2.36 16 17 C -0.05 -2.50 10.85 85.44 0.93 -1.58 16 18 N -0.31 -18.18 10.39 -56.44 -0.59 -18.77 16 19 N -0.16 -8.97 3.73 -189.98 -0.71 -9.68 16 20 C -0.35 -18.43 10.25 84.02 0.86 -17.56 16 21 H 0.14 6.40 7.83 -2.91 -0.02 6.38 16 22 C -0.01 -0.28 5.50 84.96 0.47 0.18 16 23 N -0.82 -46.58 11.81 21.67 0.26 -46.32 16 24 Si 1.02 38.02 29.55 68.60 2.03 40.04 16 25 H -0.24 -8.08 7.11 99.48 0.71 -7.37 16 26 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 27 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 28 C -0.07 -3.44 11.50 83.41 0.96 -2.48 16 29 H 0.06 0.58 6.80 -2.38 -0.02 0.57 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.08 1.09 6.90 -2.38 -0.02 1.07 16 33 H 0.04 0.55 6.35 -2.39 -0.02 0.53 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.05 0.56 7.38 -2.39 -0.02 0.54 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.06 0.96 7.79 -2.39 -0.02 0.94 16 39 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.08 1.43 6.46 -2.39 -0.02 1.42 16 41 H 0.07 1.35 6.79 -2.39 -0.02 1.33 16 42 H 0.42 8.36 7.84 -92.71 -0.73 7.63 16 43 H 0.42 13.01 8.29 -92.70 -0.77 12.24 16 44 H 0.18 9.07 5.92 -2.91 -0.02 9.05 16 45 H 0.28 14.42 8.31 -92.70 -0.77 13.65 16 46 H 0.19 6.90 8.06 -2.91 -0.02 6.87 16 Total: -1.00 -70.89 375.33 -0.96 -71.85 By element: Atomic # 1 Polarization: 42.93 SS G_CDS: -0.46 Total: 42.47 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 7.29 Total: 10.91 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -9.72 Total: -126.85 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -0.10 Total: -38.42 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.04 kcal Total: -70.89 -0.96 -71.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746407752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.887 kcal (2) G-P(sol) polarization free energy of solvation -70.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds