Wall clock time and date at job start Tue Mar 31 2020 19:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46899 * 109.47519 * 2 1 4 4 C 1.46903 * 110.99811 * 75.73712 * 3 2 1 5 5 C 1.53237 * 109.35890 * 187.26847 * 4 3 2 6 6 N 1.47081 * 108.52146 * 306.15832 * 5 4 3 7 7 C 1.34784 * 120.87886 * 231.20442 * 6 5 4 8 8 O 1.21368 * 119.99531 * 174.44535 * 7 6 5 9 9 C 1.49305 * 119.99788 * 354.44778 * 7 6 5 10 10 O 1.21399 * 120.00563 * 353.29664 * 9 7 6 11 11 N 1.34779 * 119.99596 * 173.30536 * 9 7 6 12 12 C 1.40299 * 119.99994 * 180.02562 * 11 9 7 13 13 C 1.40719 * 126.09755 * 359.68028 * 12 11 9 14 14 N 1.30876 * 108.37641 * 179.85332 * 13 12 11 15 15 N 1.40066 * 108.43314 * 0.41085 * 14 13 12 16 16 C 1.37292 * 126.05381 * 179.75580 * 15 14 13 17 17 H 1.07999 * 119.99655 * 179.97438 * 16 15 14 18 18 C 1.39003 * 120.00166 * 359.97438 * 16 15 14 19 19 N 1.31281 * 119.99933 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00086 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47248 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47141 * 119.99975 * 20 18 16 23 23 H 1.48505 * 109.47186 * 240.00016 * 20 18 16 24 24 C 1.35780 * 126.10141 * 179.97438 * 12 11 9 25 25 C 1.47078 * 118.23772 * 51.18693 * 6 5 4 26 26 C 1.46947 * 111.03709 * 200.03113 * 3 2 1 27 27 H 1.09002 * 109.51159 * 292.73097 * 26 3 2 28 28 C 1.52999 * 109.48745 * 52.79613 * 26 3 2 29 29 H 1.09005 * 109.47451 * 60.00114 * 1 2 3 30 30 H 1.09003 * 109.47712 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47092 * 300.00354 * 1 2 3 32 32 H 1.09000 * 109.47092 * 239.99646 * 2 1 3 33 33 H 1.09004 * 109.47493 * 120.00438 * 2 1 3 34 34 H 1.09001 * 109.49318 * 67.29916 * 4 3 2 35 35 H 1.08992 * 109.49236 * 307.24139 * 4 3 2 36 36 H 1.09006 * 109.63008 * 65.86942 * 5 4 3 37 37 H 1.08996 * 109.62843 * 186.25511 * 5 4 3 38 38 H 0.97000 * 120.00292 * 359.97438 * 11 9 7 39 39 H 1.08006 * 125.81506 * 359.97438 * 13 12 11 40 40 H 0.97002 * 120.00047 * 179.97438 * 19 18 16 41 41 H 1.07998 * 126.25185 * 359.97218 * 24 12 11 42 42 H 1.08995 * 109.62994 * 68.52452 * 25 6 5 43 43 H 1.09000 * 109.62611 * 188.90653 * 25 6 5 44 44 H 1.09005 * 109.46888 * 180.89754 * 28 26 3 45 45 H 1.09001 * 109.46942 * 300.89488 * 28 26 3 46 46 H 1.09000 * 109.47155 * 60.89708 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8766 1.9939 1.3292 5 6 2.2258 3.4836 1.2457 6 7 3.5598 3.6176 0.6410 7 6 4.5165 4.3596 1.2335 8 8 5.6403 4.3784 0.7756 9 6 4.1936 5.1581 2.4530 10 8 3.0459 5.2372 2.8406 11 7 5.1764 5.7914 3.1235 12 6 4.8732 6.5414 4.2698 13 6 3.5939 6.7237 4.8268 14 7 3.7103 7.4789 5.8893 15 7 5.0606 7.8155 6.0477 16 6 5.5864 8.5998 7.0444 17 1 6.6479 8.7969 7.0731 18 6 4.7526 9.1400 8.0165 19 7 3.4623 8.9007 7.9813 20 14 5.4681 10.2064 9.3731 21 1 6.9372 10.3217 9.1893 22 1 4.8541 11.5574 9.3165 23 1 5.1819 9.5875 10.6923 24 6 5.7610 7.2253 5.0364 25 6 3.8224 2.9203 -0.6270 26 6 3.4104 1.4527 -0.4698 27 1 4.0636 0.9672 0.2553 28 6 3.5284 0.7419 -1.8195 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.5509 1.5010 2.0296 35 1 0.8485 1.8800 1.6727 36 1 1.4901 3.9980 0.6273 37 1 2.2291 3.9155 2.2464 38 1 6.0935 5.7281 2.8140 39 1 2.6729 6.3093 4.4439 40 1 2.8804 9.2774 8.6600 41 1 6.8269 7.2903 4.8751 42 1 3.2402 3.3805 -1.4253 43 1 4.8841 2.9820 -0.8658 44 1 4.5632 0.7784 -2.1601 45 1 3.2180 -0.2974 -1.7112 46 1 2.8880 1.2382 -2.5487 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754509871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:14 Heat of formation + Delta-G solvation = 28.030842 kcal Electronic energy + Delta-G solvation = -28989.954655 eV Core-core repulsion = 24917.009181 eV Total energy + Delta-G solvation = -4072.945474 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.25074 -41.41547 -40.09035 -39.19452 -36.71996 -35.74114 -34.95529 -33.85899 -32.29817 -31.71416 -29.95578 -28.47771 -28.29447 -26.94239 -25.07837 -23.83257 -23.04808 -22.81528 -21.58745 -21.29578 -20.63697 -19.43255 -18.63345 -18.05895 -17.45994 -17.16836 -16.95599 -16.75511 -16.38096 -16.11594 -15.75655 -15.66051 -15.62214 -15.15862 -15.07622 -14.89879 -14.67609 -14.33155 -13.54059 -13.50791 -13.35683 -13.17373 -13.10659 -13.04495 -12.94483 -12.75697 -12.71427 -12.45202 -12.23733 -12.07708 -12.03034 -11.96564 -11.87554 -11.44091 -11.08794 -10.86977 -10.17308 -10.14072 -9.99295 -9.32771 -8.63129 -8.49320 -6.26740 0.21952 1.20547 1.27938 1.41645 1.59813 1.70515 1.99498 2.09719 2.38685 2.50397 2.78781 2.87195 3.07343 3.36642 3.71789 3.82826 3.96762 4.13070 4.19959 4.29151 4.39085 4.46176 4.50672 4.52615 4.53820 4.62509 4.71302 4.74660 4.86801 4.94202 4.94748 4.96595 4.98470 5.08574 5.14622 5.16898 5.26353 5.34487 5.40621 5.45536 5.87924 5.91973 6.03720 6.11839 6.19686 6.36766 6.65348 6.72251 7.04035 7.40737 7.62747 8.50020 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027056 B = 0.002241 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.631513 B =12492.742514 C =13302.656794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.039 3.961 3 N -0.537 5.537 4 C 0.047 3.953 5 C 0.074 3.926 6 N -0.578 5.578 7 C 0.520 3.480 8 O -0.544 6.544 9 C 0.488 3.512 10 O -0.527 6.527 11 N -0.579 5.579 12 C -0.057 4.057 13 C -0.045 4.045 14 N -0.307 5.307 15 N -0.163 5.163 16 C -0.352 4.352 17 H 0.141 0.859 18 C -0.005 4.005 19 N -0.820 5.820 20 Si 1.019 2.981 21 H -0.242 1.242 22 H -0.272 1.272 23 H -0.272 1.272 24 C -0.075 4.075 25 C 0.116 3.884 26 C 0.070 3.930 27 H 0.033 0.967 28 C -0.141 4.141 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.029 0.971 34 H 0.026 0.974 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.131 0.869 38 H 0.422 0.578 39 H 0.179 0.821 40 H 0.278 0.722 41 H 0.187 0.813 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.596 -15.810 -16.201 22.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.088 4.088 3 N -0.263 5.263 4 C -0.082 4.082 5 C -0.048 4.048 6 N -0.311 5.311 7 C 0.303 3.697 8 O -0.423 6.423 9 C 0.271 3.729 10 O -0.406 6.406 11 N -0.223 5.223 12 C -0.164 4.164 13 C -0.220 4.220 14 N -0.139 5.139 15 N 0.069 4.931 16 C -0.483 4.483 17 H 0.158 0.842 18 C -0.217 4.217 19 N -0.448 5.448 20 Si 0.838 3.162 21 H -0.165 1.165 22 H -0.197 1.197 23 H -0.197 1.197 24 C -0.226 4.226 25 C -0.006 4.006 26 C -0.039 4.039 27 H 0.051 0.949 28 C -0.199 4.199 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.148 0.852 38 H 0.260 0.740 39 H 0.196 0.804 40 H 0.088 0.912 41 H 0.204 0.796 42 H 0.109 0.891 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.906 -14.882 -15.448 21.534 hybrid contribution 1.287 -0.358 0.440 1.407 sum -0.619 -15.240 -15.008 21.398 Atomic orbital electron populations 1.21728 0.94057 1.02038 1.02143 1.22341 0.96860 0.87829 1.01729 1.62106 1.19741 1.19305 1.25111 1.22497 1.02333 0.93720 0.89640 1.23008 0.81666 0.96816 1.03293 1.48081 1.13093 1.46230 1.23660 1.19733 0.84941 0.80780 0.84288 1.90715 1.21078 1.64921 1.65542 1.20178 0.85397 0.82201 0.85159 1.90378 1.20221 1.61659 1.68328 1.42112 1.11274 1.45297 1.23657 1.17278 0.93761 1.09820 0.95497 1.24285 0.98011 1.03276 0.96441 1.78165 0.95856 1.20481 1.19381 1.44842 1.04083 1.28104 1.16104 1.20676 0.95924 1.27710 1.04006 0.84164 1.26868 0.95259 0.98369 1.01220 1.70375 1.04959 1.37048 1.32394 0.84536 0.79615 0.76545 0.75528 1.16477 1.19726 1.19707 1.21992 0.98631 1.06849 0.95087 1.22070 1.02913 0.91385 0.84188 1.21980 0.88777 0.94726 0.98440 0.94931 1.21897 1.03159 1.00592 0.94256 0.92079 0.91155 0.93349 0.88548 0.95254 0.95600 0.87989 0.90041 0.85239 0.74004 0.80417 0.91232 0.79633 0.89111 0.88741 0.90802 0.90650 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 10.02 71.98 0.72 -0.99 16 2 C 0.04 0.53 5.54 86.30 0.48 1.01 16 3 N -0.54 -9.20 4.40 -869.92 -3.83 -13.03 16 4 C 0.05 0.94 5.45 86.38 0.47 1.41 16 5 C 0.07 1.79 6.17 86.35 0.53 2.32 16 6 N -0.58 -14.90 3.01 -819.67 -2.47 -17.36 16 7 C 0.52 16.10 7.75 87.22 0.68 16.78 16 8 O -0.54 -17.91 15.95 -3.30 -0.05 -17.96 16 9 C 0.49 17.42 7.73 87.22 0.67 18.09 16 10 O -0.53 -20.47 10.28 -3.40 -0.03 -20.51 16 11 N -0.58 -21.34 5.45 -305.34 -1.66 -23.01 16 12 C -0.06 -2.61 6.90 37.82 0.26 -2.35 16 13 C -0.04 -2.32 10.84 85.44 0.93 -1.40 16 14 N -0.31 -17.99 10.39 -56.43 -0.59 -18.58 16 15 N -0.16 -8.92 3.73 -189.99 -0.71 -9.63 16 16 C -0.35 -18.34 10.25 84.02 0.86 -17.48 16 17 H 0.14 6.36 7.83 -2.91 -0.02 6.34 16 18 C -0.01 -0.26 5.50 84.96 0.47 0.21 16 19 N -0.82 -46.32 11.81 21.66 0.26 -46.06 16 20 Si 1.02 37.95 29.55 68.60 2.03 39.98 16 21 H -0.24 -8.11 7.11 99.48 0.71 -7.40 16 22 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 23 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 24 C -0.07 -3.44 11.50 83.41 0.96 -2.48 16 25 C 0.12 2.33 5.90 86.35 0.51 2.84 16 26 C 0.07 1.17 2.61 44.99 0.12 1.29 16 27 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 28 C -0.14 -1.54 8.85 71.98 0.64 -0.91 16 29 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.65 6.82 -2.39 -0.02 0.63 16 32 H 0.10 1.02 5.20 -2.39 -0.01 1.01 16 33 H 0.03 0.43 8.00 -2.38 -0.02 0.41 16 34 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.10 1.82 6.69 -2.39 -0.02 1.80 16 36 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.13 3.84 4.30 -51.21 -0.22 3.62 16 38 H 0.42 13.25 8.31 -92.71 -0.77 12.48 16 39 H 0.18 8.98 5.92 -2.91 -0.02 8.96 16 40 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 41 H 0.19 6.87 8.06 -2.91 -0.02 6.85 16 42 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.09 1.97 7.04 -2.39 -0.02 1.96 16 44 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.07 0.67 5.87 -2.39 -0.01 0.66 16 46 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -69.23 368.36 1.28 -67.95 By element: Atomic # 1 Polarization: 39.82 SS G_CDS: 0.05 Total: 39.86 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 8.29 Total: 18.35 kcal Atomic # 7 Polarization: -118.67 SS G_CDS: -9.00 Total: -127.67 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -0.09 Total: -38.47 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Total: -69.23 1.28 -67.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754509871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.980 kcal (2) G-P(sol) polarization free energy of solvation -69.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds