Wall clock time and date at job start Tue Mar 31 2020 18:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47356 * 2 1 4 4 C 1.50693 * 109.47500 * 239.99350 * 2 1 3 5 5 H 1.07994 * 120.00218 * 240.00717 * 4 2 1 6 6 C 1.37881 * 120.00001 * 59.99983 * 4 2 1 7 7 N 1.31520 * 119.99782 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00368 * 180.02562 * 6 4 2 9 9 H 1.48509 * 109.47134 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47163 * 120.00096 * 8 6 4 11 11 H 1.48498 * 109.47522 * 240.00493 * 8 6 4 12 12 N 1.46904 * 109.46601 * 119.99366 * 2 1 3 13 13 C 1.46903 * 111.00155 * 287.54901 * 12 2 1 14 14 C 1.46893 * 110.99994 * 51.50515 * 12 2 1 15 15 N 1.46504 * 109.47250 * 154.74138 * 14 12 2 16 16 C 1.47392 * 125.37382 * 269.93131 * 15 14 12 17 17 C 1.54109 * 103.69815 * 179.97438 * 16 15 14 18 18 N 1.47049 * 103.99095 * 0.10743 * 17 16 15 19 19 C 1.46503 * 125.41076 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.47483 * 89.99770 * 19 18 17 21 21 C 1.38268 * 119.98697 * 269.73428 * 20 19 18 22 22 C 1.38225 * 120.04686 * 179.72547 * 21 20 19 23 23 C 1.38220 * 120.02649 * 0.54159 * 22 21 20 24 24 C 1.38438 * 119.97261 * 359.72670 * 23 22 21 25 25 F 1.35102 * 120.02521 * 180.02562 * 24 23 22 26 26 C 1.38180 * 119.98465 * 89.99926 * 20 19 18 27 27 C 1.33945 * 125.41147 * 90.02161 * 15 14 12 28 28 O 1.21589 * 123.04201 * 0.02562 * 27 15 14 29 29 H 1.09006 * 109.46911 * 53.74580 * 1 2 3 30 30 H 1.08998 * 109.47347 * 173.73803 * 1 2 3 31 31 H 1.09000 * 109.47497 * 293.74509 * 1 2 3 32 32 H 0.96998 * 119.99820 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47130 * 183.95683 * 13 12 2 34 34 H 1.09004 * 109.46718 * 303.95451 * 13 12 2 35 35 H 1.08994 * 109.47265 * 63.95390 * 13 12 2 36 36 H 1.08998 * 109.47596 * 34.73466 * 14 12 2 37 37 H 1.09009 * 109.47183 * 274.73809 * 14 12 2 38 38 H 1.08989 * 110.59184 * 61.43854 * 16 15 14 39 39 H 1.09000 * 110.65581 * 298.51659 * 16 15 14 40 40 H 1.09002 * 110.54234 * 241.44277 * 17 16 15 41 41 H 1.08994 * 110.54974 * 118.77619 * 17 16 15 42 42 H 1.09003 * 109.47213 * 210.00354 * 19 18 17 43 43 H 1.09002 * 109.46919 * 329.99517 * 19 18 17 44 44 H 1.07992 * 119.97596 * 359.96845 * 21 20 19 45 45 H 1.08001 * 119.98558 * 180.26877 * 22 21 20 46 46 H 1.08001 * 120.01368 * 179.75110 * 23 22 21 47 47 H 1.08001 * 120.01023 * 359.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1311 6 6 1.6994 -0.2396 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3215 -1.1206 -4.0078 9 1 3.1456 -2.2880 -3.6035 10 1 1.1662 -1.5870 -4.8159 11 1 3.1468 -0.1878 -4.8164 12 7 2.0195 -0.6924 1.1996 13 6 1.8051 0.1231 2.4025 14 6 1.3902 -2.0123 1.3392 15 7 2.2672 -2.8918 2.1162 16 6 3.3117 -3.7673 1.5550 17 6 3.9167 -4.4545 2.7946 18 7 3.1502 -3.8977 3.9193 19 6 3.3456 -4.2381 5.3308 20 6 4.3583 -3.3017 5.9379 21 6 5.7015 -3.6290 5.9177 22 6 6.6320 -2.7684 6.4691 23 6 6.2195 -1.5847 7.0514 24 6 4.8743 -1.2585 7.0772 25 9 4.4700 -0.1015 7.6456 26 6 3.9435 -2.1188 6.5195 27 6 2.2459 -3.0290 3.4484 28 8 1.4749 -2.4208 4.1653 29 1 -0.3633 0.6078 -0.8288 30 1 -0.3634 -1.0215 -0.1121 31 1 -0.3634 0.4138 0.9406 32 1 0.7096 1.1615 -3.4845 33 1 2.2392 -0.3815 3.2657 34 1 2.2814 1.0949 2.2723 35 1 0.7358 0.2610 2.5621 36 1 1.2262 -2.4431 0.3515 37 1 0.4344 -1.9066 1.8527 38 1 4.0680 -3.1781 1.0367 39 1 2.8742 -4.5061 0.8835 40 1 4.9736 -4.2064 2.8918 41 1 3.7820 -5.5346 2.7373 42 1 2.3985 -4.1430 5.8619 43 1 3.7055 -5.2639 5.4107 44 1 6.0242 -4.5559 5.4672 45 1 7.6813 -3.0231 6.4489 46 1 6.9463 -0.9142 7.4858 47 1 2.8939 -1.8652 6.5386 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902114047.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:17 Heat of formation + Delta-G solvation = -11.421824 kcal Electronic energy + Delta-G solvation = -29723.349176 eV Core-core repulsion = 25628.772944 eV Total energy + Delta-G solvation = -4094.576232 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.95847 -40.84934 -39.17067 -37.13648 -35.98286 -34.54440 -32.71392 -31.56288 -30.68005 -29.15134 -28.57076 -26.96122 -25.75438 -25.19136 -23.47683 -23.00502 -22.41774 -21.72116 -19.90682 -18.97550 -17.60363 -16.87150 -16.61494 -16.45732 -16.34392 -15.90819 -15.81205 -15.63546 -15.06015 -14.41529 -14.26753 -14.25270 -13.90741 -13.74725 -13.43342 -13.27075 -13.15828 -12.89239 -12.41327 -12.28807 -12.11447 -12.08240 -11.94208 -11.83264 -11.66775 -11.36382 -11.25341 -10.97489 -10.79715 -10.70145 -10.46907 -10.16815 -9.93767 -9.79098 -9.20400 -8.99243 -8.89145 -8.81000 -8.46474 -8.17142 -7.20922 -6.04958 -4.09295 0.89559 1.03561 2.65082 3.26523 3.34827 3.37274 3.43446 3.46655 4.01772 4.08167 4.37786 4.47565 4.51209 4.60198 4.82341 4.88883 4.95691 5.01507 5.20518 5.21871 5.28104 5.33808 5.45206 5.57180 5.62886 5.80795 5.86549 5.96661 5.97569 6.06924 6.13011 6.17142 6.29719 6.35823 6.39236 6.66705 6.71237 6.74919 6.82621 6.87561 7.01335 7.20810 7.39206 7.65873 7.80588 7.91989 8.10319 8.34225 8.55070 8.88624 8.97689 9.56233 11.02420 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.015402 B = 0.003072 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.554447 B = 9112.924366 C = 9616.790911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.215 3.785 3 H 0.042 0.958 4 C -0.502 4.502 5 H 0.062 0.938 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.551 5.551 13 C 0.033 3.967 14 C 0.320 3.680 15 N -0.614 5.614 16 C 0.097 3.903 17 C 0.096 3.904 18 N -0.636 5.636 19 C 0.193 3.807 20 C -0.081 4.081 21 C -0.116 4.116 22 C -0.096 4.096 23 C -0.152 4.152 24 C 0.096 3.904 25 F -0.140 7.140 26 C -0.125 4.125 27 C 0.700 3.300 28 O -0.589 6.589 29 H 0.086 0.914 30 H 0.030 0.970 31 H 0.010 0.990 32 H 0.260 0.740 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.018 0.982 36 H 0.103 0.897 37 H 0.051 0.949 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.128 0.872 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.635 -12.767 15.895 22.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.108 3.892 3 H 0.059 0.941 4 C -0.541 4.541 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.276 5.276 13 C -0.115 4.115 14 C 0.109 3.891 15 N -0.352 5.352 16 C -0.027 4.027 17 C -0.028 4.028 18 N -0.374 5.374 19 C 0.071 3.929 20 C -0.082 4.082 21 C -0.135 4.135 22 C -0.114 4.114 23 C -0.171 4.171 24 C 0.077 3.923 25 F -0.118 7.118 26 C -0.145 4.145 27 C 0.402 3.598 28 O -0.467 6.467 29 H 0.104 0.896 30 H 0.049 0.951 31 H 0.029 0.971 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.121 0.879 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.146 0.854 45 H 0.149 0.851 46 H 0.151 0.849 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.534 -12.297 16.098 22.389 hybrid contribution -0.386 0.114 -0.807 0.902 sum 9.147 -12.183 15.292 21.585 Atomic orbital electron populations 1.22430 1.00502 1.00296 0.99703 1.19310 0.89840 0.94555 0.85447 0.94062 1.21109 1.30792 1.12605 0.89600 0.92007 1.24940 0.95139 0.95094 0.99008 1.69914 1.36860 1.22923 1.23371 0.86475 0.78508 0.79626 0.82960 1.19756 1.21184 1.21093 1.61973 1.59084 1.02759 1.03781 1.22277 0.98516 0.97415 0.93341 1.21636 0.87143 0.85708 0.94574 1.47646 1.38309 1.44028 1.05181 1.22346 0.91581 0.93437 0.95346 1.22361 0.96728 0.98484 0.85228 1.47165 1.38188 1.46610 1.05476 1.19986 0.98017 0.96083 0.78828 1.20193 0.95005 0.95693 0.97340 1.21089 0.92222 1.00197 1.00008 1.20964 0.99912 0.93323 0.97203 1.21170 0.94118 0.98982 1.02875 1.17744 0.93132 0.83408 0.98025 1.91510 1.91332 1.46474 1.82523 1.21213 1.00599 0.93983 0.98673 1.15926 0.81093 0.79802 0.83026 1.90877 1.43916 1.51860 1.60044 0.89569 0.95112 0.97091 0.92999 0.92536 0.92870 0.96374 0.87886 0.93124 0.89521 0.90284 0.90640 0.90501 0.88869 0.89235 0.85444 0.85054 0.84908 0.84181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.15 37.16 0.30 -3.78 16 2 C 0.21 5.34 2.28 -68.87 -0.16 5.18 16 3 H 0.04 1.14 7.97 -51.93 -0.41 0.73 16 4 C -0.50 -13.16 7.67 -34.44 -0.26 -13.42 16 5 H 0.06 1.60 7.56 -52.49 -0.40 1.20 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -24.85 11.39 55.43 0.63 -24.21 16 8 Si 0.90 20.55 29.54 -169.99 -5.02 15.52 16 9 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.55 -12.16 4.78 -240.20 -1.15 -13.31 16 13 C 0.03 0.70 9.06 60.07 0.54 1.25 16 14 C 0.32 6.40 4.29 -63.32 -0.27 6.13 16 15 N -0.61 -10.56 3.18 -182.05 -0.58 -11.14 16 16 C 0.10 1.25 7.71 -2.98 -0.02 1.23 16 17 C 0.10 0.94 7.67 -3.16 -0.02 0.92 16 18 N -0.64 -8.07 2.94 -180.19 -0.53 -8.60 16 19 C 0.19 1.94 6.12 -5.19 -0.03 1.91 16 20 C -0.08 -0.86 5.46 -104.63 -0.57 -1.43 16 21 C -0.12 -1.01 9.70 -39.58 -0.38 -1.39 16 22 C -0.10 -0.81 10.04 -39.59 -0.40 -1.21 16 23 C -0.15 -1.54 10.03 -39.51 -0.40 -1.94 16 24 C 0.10 1.21 7.30 -39.42 -0.29 0.92 16 25 F -0.14 -1.93 17.27 2.25 0.04 -1.89 16 26 C -0.13 -1.60 9.68 -39.52 -0.38 -1.99 16 27 C 0.70 12.05 7.64 -88.40 -0.68 11.38 16 28 O -0.59 -12.02 15.68 5.29 0.08 -11.94 16 29 H 0.09 2.26 6.27 -51.93 -0.33 1.94 16 30 H 0.03 0.70 7.00 -51.93 -0.36 0.34 16 31 H 0.01 0.23 6.65 -51.93 -0.35 -0.11 16 32 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.06 1.21 6.18 -51.93 -0.32 0.89 16 34 H 0.05 1.10 8.03 -51.93 -0.42 0.68 16 35 H 0.02 0.38 6.68 -51.93 -0.35 0.04 16 36 H 0.10 2.12 6.44 -51.93 -0.33 1.78 16 37 H 0.05 1.07 7.40 -51.92 -0.38 0.69 16 38 H 0.09 1.20 8.14 -51.94 -0.42 0.77 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 1.01 7.86 -51.93 -0.41 0.61 16 43 H 0.09 0.59 8.08 -51.93 -0.42 0.17 16 44 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 46 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 47 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 383.43 15.07 5.78 5.78 Total: -1.00 -31.67 383.43 -10.85 -42.52 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.99 Total: 2.03 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -3.11 Total: 5.24 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -1.63 Total: -57.27 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.08 Total: -11.94 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.67 -10.85 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902114047.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.100 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds