Wall clock time and date at job start Tue Mar 31 2020 18:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46895 * 110.99749 * 58.95710 * 12 2 1 14 14 C 1.46901 * 110.99984 * 295.00215 * 12 2 1 15 15 N 1.46501 * 109.47101 * 204.99909 * 14 12 2 16 16 C 1.47057 * 125.40601 * 90.00210 * 15 14 12 17 17 C 1.54109 * 103.85946 * 180.02562 * 16 15 14 18 18 N 1.47055 * 103.86286 * 359.97438 * 17 16 15 19 19 C 1.46496 * 125.41317 * 179.97438 * 18 17 16 20 20 C 1.50705 * 109.47190 * 90.00048 * 19 18 17 21 21 C 1.38211 * 120.01486 * 105.00123 * 20 19 18 22 22 C 1.38217 * 120.03107 * 179.97438 * 21 20 19 23 23 C 1.38275 * 120.04993 * 0.02562 * 22 21 20 24 24 C 1.38182 * 120.02180 * 0.02562 * 23 22 21 25 25 C 1.38444 * 120.01003 * 284.73161 * 20 19 18 26 26 F 1.35094 * 120.02794 * 359.97438 * 25 20 19 27 27 C 1.33943 * 125.41139 * 269.69768 * 15 14 12 28 28 O 1.21582 * 123.04143 * 359.97438 * 27 15 14 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 31 31 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47176 * 60.00348 * 13 12 2 34 34 H 1.09001 * 109.46775 * 180.02562 * 13 12 2 35 35 H 1.09003 * 109.47375 * 299.99556 * 13 12 2 36 36 H 1.09007 * 109.47175 * 325.00101 * 14 12 2 37 37 H 1.08998 * 109.47286 * 84.99593 * 14 12 2 38 38 H 1.09000 * 110.54928 * 298.58782 * 16 15 14 39 39 H 1.08999 * 110.54902 * 61.26258 * 16 15 14 40 40 H 1.08998 * 110.55177 * 118.59420 * 17 16 15 41 41 H 1.09002 * 110.54384 * 241.26159 * 17 16 15 42 42 H 1.08998 * 109.47416 * 210.00092 * 19 18 17 43 43 H 1.09001 * 109.46819 * 330.00285 * 19 18 17 44 44 H 1.07999 * 119.98633 * 359.97438 * 21 20 19 45 45 H 1.07998 * 119.97919 * 180.02562 * 22 21 20 46 46 H 1.07995 * 119.98932 * 179.97438 * 23 22 21 47 47 H 1.07997 * 120.00667 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 7 2.5924 -0.2871 3.4901 16 6 3.8395 0.4375 3.7771 17 6 4.4335 -0.3139 4.9843 18 7 3.4577 -1.3816 5.2497 19 6 3.5642 -2.3840 6.3127 20 6 2.8974 -1.8654 7.5608 21 6 1.6630 -2.3575 7.9406 22 6 1.0514 -1.8825 9.0854 23 6 1.6734 -0.9142 9.8519 24 6 2.9071 -0.4200 9.4736 25 6 3.5238 -0.9000 8.3304 26 9 4.7331 -0.4226 7.9634 27 6 2.4536 -1.2891 4.3679 28 8 1.5040 -2.0484 4.3625 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.7088 1.1611 -3.4845 33 1 1.8764 -2.6150 0.3648 34 1 1.9053 -2.5654 2.1441 35 1 0.4385 -2.0742 1.2640 36 1 1.6784 1.1111 2.2216 37 1 0.6415 -0.2467 2.7212 38 1 4.5165 0.3865 2.9244 39 1 3.6283 1.4752 4.0352 40 1 5.4053 -0.7376 4.7309 41 1 4.5194 0.3507 5.8440 42 1 3.0744 -3.3043 5.9947 43 1 4.6156 -2.5845 6.5190 44 1 1.1760 -3.1135 7.3425 45 1 0.0870 -2.2679 9.3816 46 1 1.1945 -0.5435 10.7461 47 1 3.3926 0.3365 10.0722 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902115219.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:25 Heat of formation + Delta-G solvation = -7.736285 kcal Electronic energy + Delta-G solvation = -29559.117347 eV Core-core repulsion = 25464.700932 eV Total energy + Delta-G solvation = -4094.416415 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.17086 -40.84616 -39.20357 -37.14124 -36.00789 -34.70849 -32.71916 -31.61046 -30.75055 -29.16605 -28.31498 -26.98607 -25.89436 -25.12608 -23.60673 -23.08439 -22.57933 -21.65002 -19.83395 -19.01032 -17.87778 -16.93866 -16.82069 -16.60303 -16.16293 -15.95330 -15.71742 -15.63337 -15.01640 -14.49537 -14.31369 -14.21343 -14.02368 -13.81540 -13.50113 -13.26965 -13.21702 -12.89329 -12.56112 -12.48133 -12.38221 -12.24205 -11.90646 -11.65468 -11.48034 -11.29674 -11.05018 -10.97038 -10.76257 -10.66979 -10.52826 -10.01095 -9.93086 -9.81949 -9.28241 -9.00807 -8.96172 -8.78343 -8.38946 -8.25784 -7.18102 -6.01025 -4.04551 0.81738 0.93892 2.62451 3.32263 3.33493 3.37363 3.40870 3.46109 3.97119 3.97833 4.39318 4.42732 4.44654 4.58437 4.63969 4.84559 4.98291 5.00558 5.11379 5.20035 5.31280 5.38594 5.43518 5.51792 5.57418 5.69219 5.78878 5.83956 5.91670 5.99241 6.05197 6.13422 6.21896 6.42493 6.55618 6.60510 6.71073 6.78815 6.86377 7.02129 7.03361 7.15214 7.45582 7.72573 7.84183 7.86349 8.10150 8.38606 8.57498 8.86941 9.01130 9.60372 11.05969 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.025338 B = 0.002535 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.796383 B =11042.719284 C =11339.422201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.217 3.783 3 H 0.039 0.961 4 C -0.499 4.499 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.278 1.278 12 N -0.551 5.551 13 C 0.042 3.958 14 C 0.313 3.687 15 N -0.615 5.615 16 C 0.096 3.904 17 C 0.094 3.906 18 N -0.634 5.634 19 C 0.195 3.805 20 C -0.141 4.141 21 C -0.066 4.066 22 C -0.133 4.133 23 C -0.090 4.090 24 C -0.160 4.160 25 C 0.111 3.889 26 F -0.137 7.137 27 C 0.702 3.298 28 O -0.586 6.586 29 H 0.033 0.967 30 H 0.006 0.994 31 H 0.089 0.911 32 H 0.261 0.739 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.019 0.981 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.136 0.864 45 H 0.129 0.871 46 H 0.131 0.869 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.343 -1.673 24.642 25.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.110 3.890 3 H 0.057 0.943 4 C -0.538 4.538 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.214 1.214 10 H -0.203 1.203 11 H -0.204 1.204 12 N -0.276 5.276 13 C -0.107 4.107 14 C 0.102 3.898 15 N -0.353 5.353 16 C -0.028 4.028 17 C -0.029 4.029 18 N -0.372 5.372 19 C 0.072 3.928 20 C -0.143 4.143 21 C -0.084 4.084 22 C -0.151 4.151 23 C -0.109 4.109 24 C -0.179 4.179 25 C 0.091 3.909 26 F -0.116 7.116 27 C 0.404 3.596 28 O -0.464 6.464 29 H 0.052 0.948 30 H 0.025 0.975 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.037 0.963 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.115 0.885 43 H 0.107 0.893 44 H 0.154 0.846 45 H 0.147 0.853 46 H 0.149 0.851 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.246 -1.993 24.383 25.020 hybrid contribution -0.247 -0.107 -0.865 0.906 sum 4.999 -2.100 23.517 24.134 Atomic orbital electron populations 1.22448 1.00625 0.99676 1.00534 1.19284 0.89811 0.94314 0.85560 0.94277 1.21059 1.30629 1.12486 0.89577 0.92010 1.24918 0.95218 0.95135 0.98968 1.69871 1.36984 1.23053 1.23528 0.86569 0.79172 0.79645 0.82057 1.21399 1.20274 1.20373 1.62028 1.60449 1.02847 1.02312 1.22204 0.97202 0.90258 1.01007 1.21568 0.88282 0.97356 0.82633 1.47487 1.24217 1.31849 1.31752 1.22301 0.87097 0.96288 0.97097 1.22420 0.93282 0.89524 0.97711 1.47140 1.23949 1.33121 1.33007 1.19891 1.00609 0.90322 0.81930 1.20451 0.97059 0.98825 0.97998 1.21094 0.92874 0.98786 0.95673 1.21253 1.00524 0.97892 0.95412 1.21040 0.94135 0.96095 0.99580 1.21121 0.97144 1.02608 0.97003 1.17556 0.81942 0.96103 0.95301 1.91468 1.41875 1.86904 1.91319 1.15867 0.82594 0.81519 0.79648 1.90878 1.33398 1.46140 1.75944 0.94808 0.97514 0.89213 0.92940 0.91444 0.93214 0.96272 0.89785 0.92677 0.89521 0.90601 0.90319 0.90448 0.88485 0.89305 0.84574 0.85265 0.85132 0.84861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 8.34 37.16 0.31 -3.91 16 2 C 0.22 5.40 2.27 -68.87 -0.16 5.25 16 3 H 0.04 1.05 7.93 -51.92 -0.41 0.63 16 4 C -0.50 -13.64 7.94 -34.44 -0.27 -13.91 16 5 H 0.06 1.71 6.75 -52.49 -0.35 1.36 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.27 11.32 55.43 0.63 -24.64 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.39 16 9 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.55 -12.19 4.84 -240.19 -1.16 -13.35 16 13 C 0.04 0.92 8.68 60.06 0.52 1.44 16 14 C 0.31 6.00 4.84 -63.31 -0.31 5.70 16 15 N -0.62 -10.42 3.17 -182.32 -0.58 -11.00 16 16 C 0.10 1.23 7.68 -3.16 -0.02 1.20 16 17 C 0.09 1.04 7.38 -3.16 -0.02 1.01 16 18 N -0.63 -8.60 2.94 -180.19 -0.53 -9.13 16 19 C 0.20 2.18 5.81 -5.19 -0.03 2.15 16 20 C -0.14 -1.52 5.47 -104.55 -0.57 -2.09 16 21 C -0.07 -0.67 9.67 -39.60 -0.38 -1.05 16 22 C -0.13 -1.13 10.04 -39.58 -0.40 -1.52 16 23 C -0.09 -0.70 10.04 -39.59 -0.40 -1.10 16 24 C -0.16 -1.38 10.03 -39.51 -0.40 -1.77 16 25 C 0.11 1.13 7.25 -39.42 -0.29 0.85 16 26 F -0.14 -1.41 14.89 2.25 0.03 -1.38 16 27 C 0.70 12.25 7.62 -88.40 -0.67 11.58 16 28 O -0.59 -12.03 15.60 5.29 0.08 -11.95 16 29 H 0.03 0.82 6.38 -51.93 -0.33 0.48 16 30 H 0.01 0.13 7.13 -51.93 -0.37 -0.24 16 31 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 33 H 0.07 1.55 6.53 -51.93 -0.34 1.21 16 34 H 0.05 1.09 5.93 -51.93 -0.31 0.78 16 35 H 0.02 0.43 6.27 -51.93 -0.33 0.10 16 36 H 0.08 1.52 7.72 -51.93 -0.40 1.12 16 37 H 0.06 1.13 7.33 -51.93 -0.38 0.75 16 38 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.77 6.57 -51.93 -0.34 0.43 16 42 H 0.10 1.12 7.73 -51.93 -0.40 0.72 16 43 H 0.09 0.80 8.07 -51.93 -0.42 0.38 16 44 H 0.14 1.38 8.00 -52.49 -0.42 0.96 16 45 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 46 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 47 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 377.31 15.07 5.69 5.69 Total: -1.00 -31.96 377.31 -10.83 -42.79 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.79 Total: 1.24 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -3.18 Total: 5.33 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -1.64 Total: -58.12 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.08 Total: -11.95 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.03 Total: -1.38 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.96 -10.83 -42.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902115219.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.056 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds