Wall clock time and date at job start Tue Mar 31 2020 18:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46895 * 110.99749 * 58.95710 * 12 2 1 14 14 C 1.46901 * 110.99984 * 295.00215 * 12 2 1 15 15 N 1.46501 * 109.47101 * 204.99909 * 14 12 2 16 16 C 1.47057 * 125.40601 * 90.00210 * 15 14 12 17 17 C 1.54109 * 103.85946 * 180.02562 * 16 15 14 18 18 N 1.47055 * 103.86286 * 359.97438 * 17 16 15 19 19 C 1.46496 * 125.41317 * 179.97438 * 18 17 16 20 20 C 1.50705 * 109.47190 * 90.00048 * 19 18 17 21 21 C 1.38211 * 120.01486 * 105.00123 * 20 19 18 22 22 C 1.38217 * 120.03107 * 179.97438 * 21 20 19 23 23 C 1.38275 * 120.04993 * 0.02562 * 22 21 20 24 24 C 1.38182 * 120.02180 * 0.02562 * 23 22 21 25 25 C 1.38444 * 120.01003 * 284.73161 * 20 19 18 26 26 F 1.35094 * 120.02794 * 359.97438 * 25 20 19 27 27 C 1.33943 * 125.41139 * 269.69768 * 15 14 12 28 28 O 1.21582 * 123.04143 * 359.97438 * 27 15 14 29 29 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 31 31 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47176 * 60.00348 * 13 12 2 34 34 H 1.09001 * 109.46775 * 180.02562 * 13 12 2 35 35 H 1.09003 * 109.47375 * 299.99556 * 13 12 2 36 36 H 1.09007 * 109.47175 * 325.00101 * 14 12 2 37 37 H 1.08998 * 109.47286 * 84.99593 * 14 12 2 38 38 H 1.09000 * 110.54928 * 298.58782 * 16 15 14 39 39 H 1.08999 * 110.54902 * 61.26258 * 16 15 14 40 40 H 1.08998 * 110.55177 * 118.59420 * 17 16 15 41 41 H 1.09002 * 110.54384 * 241.26159 * 17 16 15 42 42 H 1.08998 * 109.47416 * 210.00092 * 19 18 17 43 43 H 1.09001 * 109.46819 * 330.00285 * 19 18 17 44 44 H 1.07999 * 119.98633 * 359.97438 * 21 20 19 45 45 H 1.07998 * 119.97919 * 180.02562 * 22 21 20 46 46 H 1.07995 * 119.98932 * 179.97438 * 23 22 21 47 47 H 1.07997 * 120.00667 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 7 2.5924 -0.2871 3.4901 16 6 3.8395 0.4375 3.7771 17 6 4.4335 -0.3139 4.9843 18 7 3.4577 -1.3816 5.2497 19 6 3.5642 -2.3840 6.3127 20 6 2.8974 -1.8654 7.5608 21 6 1.6630 -2.3575 7.9406 22 6 1.0514 -1.8825 9.0854 23 6 1.6734 -0.9142 9.8519 24 6 2.9071 -0.4200 9.4736 25 6 3.5238 -0.9000 8.3304 26 9 4.7331 -0.4226 7.9634 27 6 2.4536 -1.2891 4.3679 28 8 1.5040 -2.0484 4.3625 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.7088 1.1611 -3.4845 33 1 1.8764 -2.6150 0.3648 34 1 1.9053 -2.5654 2.1441 35 1 0.4385 -2.0742 1.2640 36 1 1.6784 1.1111 2.2216 37 1 0.6415 -0.2467 2.7212 38 1 4.5165 0.3865 2.9244 39 1 3.6283 1.4752 4.0352 40 1 5.4053 -0.7376 4.7309 41 1 4.5194 0.3507 5.8440 42 1 3.0744 -3.3043 5.9947 43 1 4.6156 -2.5845 6.5190 44 1 1.1760 -3.1135 7.3425 45 1 0.0870 -2.2679 9.3816 46 1 1.1945 -0.5435 10.7461 47 1 3.3926 0.3365 10.0722 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902115219.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:24 Heat of formation + Delta-G solvation = -26.278863 kcal Electronic energy + Delta-G solvation = -29559.921413 eV Core-core repulsion = 25464.700932 eV Total energy + Delta-G solvation = -4095.220482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.91166 -42.05570 -39.94087 -38.88444 -37.33417 -35.92664 -34.54266 -32.69910 -31.46194 -30.62511 -29.82994 -28.34119 -27.32759 -26.98000 -25.16125 -23.92555 -23.48902 -22.63889 -21.43264 -20.49848 -18.64507 -18.37158 -17.90714 -17.85865 -17.39047 -17.05224 -16.96753 -16.60947 -16.48509 -15.96738 -15.68046 -15.34707 -15.16841 -14.93261 -14.72260 -14.55767 -14.37222 -14.24269 -14.21695 -13.43289 -13.39938 -13.28815 -13.17224 -12.99818 -12.85145 -12.78597 -12.64343 -12.58618 -12.37377 -12.32879 -12.02923 -11.99258 -11.85182 -11.22927 -10.98102 -10.49207 -10.16442 -9.98880 -9.68273 -9.44688 -8.96660 -8.10722 -6.21193 0.10445 0.24565 1.43444 1.44548 1.47856 1.52660 2.10505 2.43550 2.60152 2.89507 3.18342 3.26877 3.44180 3.59584 3.63494 3.68083 3.89183 4.05550 4.14736 4.22843 4.36430 4.36818 4.45435 4.54281 4.57679 4.61154 4.64520 4.71578 4.75610 4.85913 4.89944 4.96585 5.05195 5.08792 5.10129 5.12793 5.19815 5.38318 5.47366 5.48531 5.67176 5.69100 5.74355 5.84957 5.94030 6.11135 6.40150 6.64371 6.66068 6.89852 7.47071 7.55022 8.94926 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.025338 B = 0.002535 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.796383 B =11042.719284 C =11339.422201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.223 3.777 3 H 0.021 0.979 4 C -0.516 4.516 5 H 0.053 0.947 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.957 3.043 9 H -0.283 1.283 10 H -0.272 1.272 11 H -0.276 1.276 12 N -0.553 5.553 13 C 0.058 3.942 14 C 0.320 3.680 15 N -0.623 5.623 16 C 0.092 3.908 17 C 0.099 3.901 18 N -0.629 5.629 19 C 0.192 3.808 20 C -0.155 4.155 21 C -0.085 4.085 22 C -0.135 4.135 23 C -0.085 4.085 24 C -0.161 4.161 25 C 0.098 3.902 26 F -0.139 7.139 27 C 0.692 3.308 28 O -0.626 6.626 29 H 0.026 0.974 30 H 0.025 0.975 31 H 0.067 0.933 32 H 0.262 0.738 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.011 0.989 36 H 0.096 0.904 37 H 0.040 0.960 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.112 0.888 44 H 0.126 0.874 45 H 0.148 0.852 46 H 0.162 0.838 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.435 -1.083 26.344 27.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.116 3.884 3 H 0.039 0.961 4 C -0.555 4.555 5 H 0.071 0.929 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.783 3.217 9 H -0.208 1.208 10 H -0.197 1.197 11 H -0.202 1.202 12 N -0.279 5.279 13 C -0.091 4.091 14 C 0.108 3.892 15 N -0.361 5.361 16 C -0.030 4.030 17 C -0.023 4.023 18 N -0.366 5.366 19 C 0.070 3.930 20 C -0.158 4.158 21 C -0.103 4.103 22 C -0.153 4.153 23 C -0.103 4.103 24 C -0.180 4.180 25 C 0.078 3.922 26 F -0.118 7.118 27 C 0.394 3.606 28 O -0.507 6.507 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.029 0.971 36 H 0.114 0.886 37 H 0.058 0.942 38 H 0.103 0.897 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.130 0.870 44 H 0.144 0.856 45 H 0.166 0.834 46 H 0.180 0.820 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.390 -1.393 26.133 26.939 hybrid contribution -0.588 -0.278 -1.277 1.433 sum 5.802 -1.671 24.856 25.578 Atomic orbital electron populations 1.22257 1.00295 0.99064 1.00316 1.19054 0.89906 0.93251 0.86189 0.96098 1.21286 1.30829 1.12475 0.90895 0.92925 1.25622 0.95346 0.95784 1.01589 1.69980 1.37587 1.23986 1.24153 0.85627 0.78761 0.78535 0.78770 1.20821 1.19744 1.20157 1.61987 1.60484 1.02765 1.02667 1.22002 0.96485 0.90314 1.00263 1.21391 0.88373 0.97507 0.81884 1.47409 1.25279 1.32402 1.30960 1.22567 0.85292 0.97331 0.97847 1.22590 0.93275 0.88960 0.97504 1.47252 1.23150 1.33698 1.32457 1.20051 1.01948 0.89380 0.81589 1.20403 0.97510 0.99765 0.98097 1.21177 0.93172 0.99308 0.96674 1.21542 1.01238 0.97830 0.94719 1.21427 0.93691 0.95087 1.00128 1.21451 0.97385 1.02682 0.96466 1.17699 0.82102 0.96386 0.95998 1.91453 1.41970 1.86925 1.91441 1.16135 0.82940 0.81237 0.80299 1.90837 1.35191 1.47577 1.77081 0.95513 0.95553 0.91441 0.92853 0.92761 0.93105 0.97081 0.88585 0.94199 0.89667 0.88406 0.88198 0.88752 0.89664 0.87043 0.85588 0.83382 0.82049 0.82773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.87 8.34 71.98 0.60 -7.27 16 2 C 0.22 11.27 2.27 44.17 0.10 11.37 16 3 H 0.02 1.14 7.93 -2.38 -0.02 1.12 16 4 C -0.52 -28.51 7.94 25.60 0.20 -28.30 16 5 H 0.05 2.95 6.75 -2.91 -0.02 2.93 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -52.06 11.32 21.45 0.24 -51.82 16 8 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 9 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 N -0.55 -24.71 4.84 -913.83 -4.42 -29.13 16 13 C 0.06 2.61 8.68 127.69 1.11 3.72 16 14 C 0.32 12.29 4.84 170.81 0.83 13.12 16 15 N -0.62 -20.78 3.17 -849.47 -2.69 -23.47 16 16 C 0.09 2.19 7.68 86.65 0.67 2.86 16 17 C 0.10 1.96 7.38 86.65 0.64 2.60 16 18 N -0.63 -16.45 2.94 -842.72 -2.48 -18.93 16 19 C 0.19 4.18 5.81 85.64 0.50 4.68 16 20 C -0.16 -3.24 5.47 -19.82 -0.11 -3.35 16 21 C -0.08 -1.71 9.67 22.26 0.22 -1.50 16 22 C -0.14 -2.09 10.04 22.27 0.22 -1.86 16 23 C -0.09 -1.08 10.04 22.27 0.22 -0.86 16 24 C -0.16 -2.36 10.03 22.31 0.22 -2.14 16 25 C 0.10 1.83 7.25 22.38 0.16 1.99 16 26 F -0.14 -2.57 14.89 44.97 0.67 -1.90 16 27 C 0.69 24.13 7.62 179.57 1.37 25.49 16 28 O -0.63 -26.34 15.60 -3.97 -0.06 -26.40 16 29 H 0.03 1.30 6.38 -2.39 -0.02 1.29 16 30 H 0.03 1.14 7.13 -2.39 -0.02 1.13 16 31 H 0.07 3.64 6.07 -2.39 -0.01 3.62 16 32 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 33 H 0.05 2.55 6.53 -2.39 -0.02 2.53 16 34 H 0.05 2.27 5.93 -2.39 -0.01 2.26 16 35 H 0.01 0.50 6.27 -2.39 -0.01 0.48 16 36 H 0.10 3.42 7.72 -2.38 -0.02 3.40 16 37 H 0.04 1.66 7.33 -2.39 -0.02 1.64 16 38 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.09 1.60 6.57 -2.39 -0.02 1.59 16 42 H 0.08 2.03 7.73 -2.39 -0.02 2.01 16 43 H 0.11 1.86 8.07 -2.39 -0.02 1.84 16 44 H 0.13 2.70 8.00 -2.91 -0.02 2.68 16 45 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 46 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 47 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -69.17 377.31 1.67 -67.51 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.98 Total: 16.39 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: 7.40 Total: 21.85 kcal Atomic # 7 Polarization: -114.00 SS G_CDS: -9.35 Total: -123.35 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.06 Total: -26.40 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.67 Total: -1.90 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -69.17 1.67 -67.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902115219.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.228 kcal (2) G-P(sol) polarization free energy of solvation -69.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds