Wall clock time and date at job start Tue Mar 31 2020 18:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.46944 * 2 1 4 4 C 1.50698 * 109.47057 * 120.00206 * 2 1 3 5 5 H 1.07997 * 120.00355 * 119.99586 * 4 2 1 6 6 C 1.37879 * 120.00052 * 300.00159 * 4 2 1 7 7 N 1.31517 * 119.99856 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00286 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47293 * 89.99629 * 8 6 4 10 10 H 1.48499 * 109.47489 * 209.99786 * 8 6 4 11 11 H 1.48497 * 109.47045 * 329.99916 * 8 6 4 12 12 N 1.46894 * 109.46977 * 239.99815 * 2 1 3 13 13 C 1.46893 * 111.00578 * 306.04851 * 12 2 1 14 14 C 1.46911 * 111.00030 * 70.00203 * 12 2 1 15 15 N 1.46493 * 109.47219 * 154.99269 * 14 12 2 16 16 C 1.47062 * 125.40573 * 90.00320 * 15 14 12 17 17 C 1.54102 * 103.98842 * 180.02562 * 16 15 14 18 18 N 1.47047 * 103.86597 * 359.92478 * 17 16 15 19 19 C 1.46495 * 125.41333 * 179.97438 * 18 17 16 20 20 C 1.50704 * 109.47348 * 90.00407 * 19 18 17 21 21 C 1.38217 * 120.01502 * 104.99732 * 20 19 18 22 22 C 1.38224 * 120.02723 * 179.97438 * 21 20 19 23 23 C 1.38269 * 120.04961 * 0.02562 * 22 21 20 24 24 C 1.38181 * 120.02592 * 0.02562 * 23 22 21 25 25 C 1.38439 * 120.00923 * 284.72904 * 20 19 18 26 26 F 1.35104 * 120.02901 * 359.97438 * 25 20 19 27 27 C 1.33956 * 109.18037 * 0.02562 * 18 17 16 28 28 O 1.21585 * 123.04187 * 179.97438 * 27 18 17 29 29 H 1.09003 * 109.47428 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47225 * 300.00012 * 1 2 3 31 31 H 1.08996 * 109.47391 * 59.99882 * 1 2 3 32 32 H 0.96998 * 119.99757 * 179.97438 * 7 6 4 33 33 H 1.08996 * 109.47675 * 183.95646 * 13 12 2 34 34 H 1.09004 * 109.47132 * 303.95644 * 13 12 2 35 35 H 1.09004 * 109.47551 * 63.95196 * 13 12 2 36 36 H 1.09002 * 109.46538 * 34.99446 * 14 12 2 37 37 H 1.08994 * 109.46709 * 274.99917 * 14 12 2 38 38 H 1.09002 * 110.54996 * 61.39999 * 16 15 14 39 39 H 1.08997 * 110.55013 * 298.73283 * 16 15 14 40 40 H 1.09001 * 110.55154 * 118.52658 * 17 16 15 41 41 H 1.09000 * 110.54868 * 241.18676 * 17 16 15 42 42 H 1.09008 * 109.47393 * 210.00511 * 19 18 17 43 43 H 1.09003 * 109.47621 * 330.00284 * 19 18 17 44 44 H 1.08006 * 119.98776 * 0.02562 * 21 20 19 45 45 H 1.07995 * 119.97116 * 180.02562 * 22 21 20 46 46 H 1.07995 * 119.98812 * 179.97438 * 23 22 21 47 47 H 1.07997 * 120.00996 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.6304 -0.5441 4.4119 10 1 1.3444 -0.9491 5.1123 11 1 2.4879 -2.5654 3.7122 12 7 2.0196 -0.6925 -1.1994 13 6 1.4343 -2.0354 -1.3078 14 6 1.7529 0.0973 -2.4091 15 7 2.7156 -0.2662 -3.4517 16 6 2.5293 -1.3299 -4.4500 17 6 3.8227 -1.2862 -5.2867 18 7 4.6026 -0.2008 -4.6735 19 6 5.9288 0.2428 -5.1097 20 6 5.7804 1.3285 -6.1443 21 6 6.0286 2.6453 -5.8053 22 6 5.8930 3.6412 -6.7542 23 6 5.5085 3.3216 -8.0433 24 6 5.2588 2.0060 -8.3842 25 6 5.4007 1.0066 -7.4361 26 9 5.1636 -0.2808 -7.7702 27 6 3.9081 0.3173 -3.6519 28 8 4.3207 1.2328 -2.9664 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 0.7089 1.1612 3.4844 33 1 1.8664 -2.5521 -2.1648 34 1 1.6466 -2.5988 -0.3991 35 1 0.3555 -1.9521 -1.4399 36 1 1.8499 1.1583 -2.1789 37 1 0.7417 -0.1073 -2.7608 38 1 1.6622 -1.1195 -5.0760 39 1 2.4214 -2.2983 -3.9617 40 1 4.3590 -2.2322 -5.2118 41 1 3.5971 -1.0570 -6.3282 42 1 6.4823 0.6297 -4.2540 43 1 6.4698 -0.5992 -5.5417 44 1 6.3294 2.8960 -4.7987 45 1 6.0876 4.6697 -6.4884 46 1 5.4024 4.1005 -8.7837 47 1 4.9580 1.7567 -9.3911 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902115220.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:29 Heat of formation + Delta-G solvation = -6.044815 kcal Electronic energy + Delta-G solvation = -29531.402043 eV Core-core repulsion = 25437.058976 eV Total energy + Delta-G solvation = -4094.343067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.14546 -40.76227 -39.15877 -37.19984 -35.91591 -34.66853 -32.70054 -31.58374 -30.71290 -29.14739 -28.47908 -26.79994 -26.03418 -25.20204 -23.42522 -23.11437 -22.62939 -21.67983 -19.70822 -19.10445 -17.84279 -16.88275 -16.80376 -16.59831 -16.22380 -15.90310 -15.71112 -15.55751 -14.96918 -14.46711 -14.34170 -14.12588 -14.06568 -13.76393 -13.47455 -13.35694 -13.29493 -12.86616 -12.58410 -12.45765 -12.38202 -12.20846 -12.00853 -11.61573 -11.45031 -11.27160 -11.09976 -10.98946 -10.81862 -10.68155 -10.51745 -10.05218 -9.90439 -9.74823 -9.24002 -8.97059 -8.94415 -8.75521 -8.34776 -8.23190 -7.20530 -5.97141 -4.00352 0.85658 0.97825 2.64502 3.34730 3.36806 3.40723 3.43933 3.54935 3.98727 4.00819 4.43437 4.45804 4.48459 4.53453 4.67553 4.88138 4.95067 5.02558 5.13277 5.21151 5.33319 5.35235 5.43041 5.48916 5.51667 5.61508 5.75543 5.83450 5.87006 5.98447 6.08937 6.16951 6.20028 6.24239 6.35287 6.63016 6.64665 6.76993 6.84213 6.88484 7.02658 7.16566 7.43812 7.70115 7.86960 7.91552 8.16169 8.39397 8.58918 8.96123 9.04902 9.64114 11.10068 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.019749 B = 0.002692 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.468984 B =10400.520627 C =10865.988449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.217 3.783 3 H 0.042 0.958 4 C -0.496 4.496 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.547 5.547 13 C 0.037 3.963 14 C 0.316 3.684 15 N -0.618 5.618 16 C 0.092 3.908 17 C 0.096 3.904 18 N -0.635 5.635 19 C 0.195 3.805 20 C -0.140 4.140 21 C -0.065 4.065 22 C -0.132 4.132 23 C -0.091 4.091 24 C -0.161 4.161 25 C 0.110 3.890 26 F -0.138 7.138 27 C 0.705 3.295 28 O -0.573 6.573 29 H 0.032 0.968 30 H 0.090 0.910 31 H 0.005 0.995 32 H 0.260 0.740 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.018 0.982 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.138 0.862 45 H 0.130 0.870 46 H 0.131 0.869 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.831 -0.459 -23.920 24.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.111 3.889 3 H 0.060 0.940 4 C -0.535 4.535 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.273 5.273 13 C -0.111 4.111 14 C 0.105 3.895 15 N -0.357 5.357 16 C -0.033 4.033 17 C -0.028 4.028 18 N -0.373 5.373 19 C 0.072 3.928 20 C -0.143 4.143 21 C -0.084 4.084 22 C -0.150 4.150 23 C -0.109 4.109 24 C -0.179 4.179 25 C 0.090 3.910 26 F -0.117 7.117 27 C 0.407 3.593 28 O -0.450 6.450 29 H 0.051 0.949 30 H 0.109 0.891 31 H 0.024 0.976 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.036 0.964 36 H 0.107 0.893 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.117 0.883 43 H 0.106 0.894 44 H 0.156 0.844 45 H 0.148 0.852 46 H 0.148 0.852 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.472 0.106 -23.266 24.436 hybrid contribution -0.748 -0.734 0.556 1.187 sum 6.723 -0.628 -22.709 23.692 Atomic orbital electron populations 1.22452 1.00597 0.99456 1.00624 1.19290 0.89629 0.94617 0.85355 0.94004 1.21068 1.30392 1.12447 0.89550 0.92046 1.24918 0.95263 0.95168 0.98970 1.69881 1.37132 1.23050 1.23384 0.86505 0.78543 0.79904 0.82466 1.20689 1.21395 1.20026 1.61967 1.59660 1.02825 1.02811 1.22277 0.95841 0.91844 1.01179 1.21562 0.86973 0.97842 0.83161 1.47550 1.18851 1.36606 1.32740 1.22357 0.97250 0.93183 0.90487 1.22361 0.91342 0.91354 0.97718 1.47117 1.18574 1.37557 1.34068 1.19897 0.82443 0.94590 0.95835 1.20458 1.03288 0.96934 0.93580 1.21131 0.96252 0.90960 1.00040 1.21263 1.00614 0.99883 0.93257 1.21034 0.97637 0.95472 0.96749 1.21108 1.04397 0.92800 0.99627 1.17552 1.01380 0.78594 0.93469 1.91463 1.91923 1.35354 1.92923 1.15888 0.80893 0.82185 0.80330 1.90916 1.71750 1.31403 1.50883 0.94868 0.89137 0.97600 0.93014 0.94250 0.90771 0.96383 0.89253 0.93378 0.90765 0.90224 0.90457 0.90433 0.88338 0.89355 0.84447 0.85219 0.85154 0.84919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.26 37.16 0.31 -3.80 16 2 C 0.22 5.57 2.27 -68.87 -0.16 5.42 16 3 H 0.04 1.21 7.80 -51.93 -0.40 0.81 16 4 C -0.50 -13.87 7.91 -34.44 -0.27 -14.14 16 5 H 0.06 1.74 7.12 -52.49 -0.37 1.36 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.85 11.32 55.43 0.63 -25.22 16 8 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.55 -12.11 4.80 -240.20 -1.15 -13.27 16 13 C 0.04 0.71 8.61 60.06 0.52 1.23 16 14 C 0.32 6.08 5.04 -63.31 -0.32 5.76 16 15 N -0.62 -10.58 3.18 -182.23 -0.58 -11.16 16 16 C 0.09 1.11 7.44 -3.16 -0.02 1.09 16 17 C 0.10 1.05 7.38 -3.17 -0.02 1.02 16 18 N -0.63 -8.94 2.94 -180.10 -0.53 -9.47 16 19 C 0.19 2.30 5.81 -5.19 -0.03 2.27 16 20 C -0.14 -1.58 5.47 -104.55 -0.57 -2.16 16 21 C -0.07 -0.71 9.67 -39.59 -0.38 -1.09 16 22 C -0.13 -1.19 10.04 -39.58 -0.40 -1.59 16 23 C -0.09 -0.73 10.04 -39.59 -0.40 -1.13 16 24 C -0.16 -1.42 10.03 -39.51 -0.40 -1.82 16 25 C 0.11 1.15 7.25 -39.42 -0.29 0.87 16 26 F -0.14 -1.44 14.89 2.25 0.03 -1.40 16 27 C 0.71 13.06 8.30 -88.12 -0.73 12.33 16 28 O -0.57 -13.04 17.04 5.29 0.09 -12.95 16 29 H 0.03 0.75 6.41 -51.93 -0.33 0.42 16 30 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 31 H 0.00 0.11 7.31 -51.93 -0.38 -0.27 16 32 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.04 0.65 6.09 -51.93 -0.32 0.33 16 34 H 0.07 1.56 6.76 -51.93 -0.35 1.21 16 35 H 0.02 0.33 6.38 -51.93 -0.33 0.00 16 36 H 0.09 1.91 7.42 -51.93 -0.39 1.52 16 37 H 0.05 0.83 7.57 -51.93 -0.39 0.44 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.92 6.38 -51.93 -0.33 0.59 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.76 6.57 -51.93 -0.34 0.42 16 42 H 0.10 1.23 7.72 -51.92 -0.40 0.83 16 43 H 0.09 0.84 8.07 -51.93 -0.42 0.42 16 44 H 0.14 1.51 8.00 -52.48 -0.42 1.09 16 45 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 47 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 378.30 15.07 5.70 5.70 Total: -1.00 -33.54 378.30 -10.83 -44.38 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.75 Total: 0.83 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -3.26 Total: 5.78 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: -1.63 Total: -59.12 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.09 Total: -12.95 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.03 Total: -1.40 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.54 -10.83 -44.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902115220.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.331 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds