Wall clock time and date at job start Tue Mar 31 2020 18:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.46944 * 2 1 4 4 C 1.50698 * 109.47057 * 120.00206 * 2 1 3 5 5 H 1.07997 * 120.00355 * 119.99586 * 4 2 1 6 6 C 1.37879 * 120.00052 * 300.00159 * 4 2 1 7 7 N 1.31517 * 119.99856 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00286 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47293 * 89.99629 * 8 6 4 10 10 H 1.48499 * 109.47489 * 209.99786 * 8 6 4 11 11 H 1.48497 * 109.47045 * 329.99916 * 8 6 4 12 12 N 1.46894 * 109.46977 * 239.99815 * 2 1 3 13 13 C 1.46893 * 111.00578 * 306.04851 * 12 2 1 14 14 C 1.46911 * 111.00030 * 70.00203 * 12 2 1 15 15 N 1.46493 * 109.47219 * 154.99269 * 14 12 2 16 16 C 1.47062 * 125.40573 * 90.00320 * 15 14 12 17 17 C 1.54102 * 103.98842 * 180.02562 * 16 15 14 18 18 N 1.47047 * 103.86597 * 359.92478 * 17 16 15 19 19 C 1.46495 * 125.41333 * 179.97438 * 18 17 16 20 20 C 1.50704 * 109.47348 * 90.00407 * 19 18 17 21 21 C 1.38217 * 120.01502 * 104.99732 * 20 19 18 22 22 C 1.38224 * 120.02723 * 179.97438 * 21 20 19 23 23 C 1.38269 * 120.04961 * 0.02562 * 22 21 20 24 24 C 1.38181 * 120.02592 * 0.02562 * 23 22 21 25 25 C 1.38439 * 120.00923 * 284.72904 * 20 19 18 26 26 F 1.35104 * 120.02901 * 359.97438 * 25 20 19 27 27 C 1.33956 * 109.18037 * 0.02562 * 18 17 16 28 28 O 1.21585 * 123.04187 * 179.97438 * 27 18 17 29 29 H 1.09003 * 109.47428 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47225 * 300.00012 * 1 2 3 31 31 H 1.08996 * 109.47391 * 59.99882 * 1 2 3 32 32 H 0.96998 * 119.99757 * 179.97438 * 7 6 4 33 33 H 1.08996 * 109.47675 * 183.95646 * 13 12 2 34 34 H 1.09004 * 109.47132 * 303.95644 * 13 12 2 35 35 H 1.09004 * 109.47551 * 63.95196 * 13 12 2 36 36 H 1.09002 * 109.46538 * 34.99446 * 14 12 2 37 37 H 1.08994 * 109.46709 * 274.99917 * 14 12 2 38 38 H 1.09002 * 110.54996 * 61.39999 * 16 15 14 39 39 H 1.08997 * 110.55013 * 298.73283 * 16 15 14 40 40 H 1.09001 * 110.55154 * 118.52658 * 17 16 15 41 41 H 1.09000 * 110.54868 * 241.18676 * 17 16 15 42 42 H 1.09008 * 109.47393 * 210.00511 * 19 18 17 43 43 H 1.09003 * 109.47621 * 330.00284 * 19 18 17 44 44 H 1.08006 * 119.98776 * 0.02562 * 21 20 19 45 45 H 1.07995 * 119.97116 * 180.02562 * 22 21 20 46 46 H 1.07995 * 119.98812 * 179.97438 * 23 22 21 47 47 H 1.07997 * 120.00996 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.6304 -0.5441 4.4119 10 1 1.3444 -0.9491 5.1123 11 1 2.4879 -2.5654 3.7122 12 7 2.0196 -0.6925 -1.1994 13 6 1.4343 -2.0354 -1.3078 14 6 1.7529 0.0973 -2.4091 15 7 2.7156 -0.2662 -3.4517 16 6 2.5293 -1.3299 -4.4500 17 6 3.8227 -1.2862 -5.2867 18 7 4.6026 -0.2008 -4.6735 19 6 5.9288 0.2428 -5.1097 20 6 5.7804 1.3285 -6.1443 21 6 6.0286 2.6453 -5.8053 22 6 5.8930 3.6412 -6.7542 23 6 5.5085 3.3216 -8.0433 24 6 5.2588 2.0060 -8.3842 25 6 5.4007 1.0066 -7.4361 26 9 5.1636 -0.2808 -7.7702 27 6 3.9081 0.3173 -3.6519 28 8 4.3207 1.2328 -2.9664 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 0.7089 1.1612 3.4844 33 1 1.8664 -2.5521 -2.1648 34 1 1.6466 -2.5988 -0.3991 35 1 0.3555 -1.9521 -1.4399 36 1 1.8499 1.1583 -2.1789 37 1 0.7417 -0.1073 -2.7608 38 1 1.6622 -1.1195 -5.0760 39 1 2.4214 -2.2983 -3.9617 40 1 4.3590 -2.2322 -5.2118 41 1 3.5971 -1.0570 -6.3282 42 1 6.4823 0.6297 -4.2540 43 1 6.4698 -0.5992 -5.5417 44 1 6.3294 2.8960 -4.7987 45 1 6.0876 4.6697 -6.4884 46 1 5.4024 4.1005 -8.7837 47 1 4.9580 1.7567 -9.3911 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902115220.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:28 Heat of formation + Delta-G solvation = -26.803678 kcal Electronic energy + Delta-G solvation = -29532.302215 eV Core-core repulsion = 25437.058976 eV Total energy + Delta-G solvation = -4095.243239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.175 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.90922 -41.99538 -39.93900 -38.90586 -37.32527 -35.91850 -34.54703 -32.70314 -31.46659 -30.57199 -29.99557 -28.09152 -27.31456 -27.18292 -25.02142 -23.97308 -23.51085 -22.65145 -21.37721 -20.57418 -18.63822 -18.38773 -17.88886 -17.88034 -17.39121 -17.11825 -16.85363 -16.59782 -16.51729 -15.93816 -15.63859 -15.37986 -15.15991 -14.99887 -14.75227 -14.56262 -14.31997 -14.24873 -14.21046 -13.51400 -13.39108 -13.24007 -13.17097 -13.02325 -12.91198 -12.75330 -12.60122 -12.50697 -12.39086 -12.28647 -12.05996 -11.99935 -11.81649 -11.24816 -10.99805 -10.50680 -10.17193 -9.99211 -9.68064 -9.40033 -8.90746 -8.11422 -6.22694 0.10095 0.23983 1.40217 1.42095 1.46949 1.52195 2.13943 2.42233 2.60338 2.90869 3.17146 3.25936 3.50922 3.58328 3.62274 3.68309 3.85566 4.02412 4.11392 4.20300 4.33549 4.36184 4.45442 4.51391 4.55645 4.58636 4.64321 4.70737 4.78946 4.86863 4.89489 4.95251 5.05175 5.09739 5.11506 5.18448 5.22728 5.38703 5.47601 5.49980 5.65620 5.69043 5.75364 5.86925 5.93736 6.19003 6.46512 6.65109 6.70469 6.89692 7.45959 7.58645 8.94493 Molecular weight = 335.18amu Principal moments of inertia in cm(-1) A = 0.019749 B = 0.002692 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.468984 B =10400.520627 C =10865.988449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.224 3.776 3 H -0.007 1.007 4 C -0.513 4.513 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.282 1.282 10 H -0.280 1.280 11 H -0.266 1.266 12 N -0.567 5.567 13 C 0.044 3.956 14 C 0.324 3.676 15 N -0.624 5.624 16 C 0.088 3.912 17 C 0.098 3.902 18 N -0.629 5.629 19 C 0.191 3.809 20 C -0.155 4.155 21 C -0.088 4.088 22 C -0.136 4.136 23 C -0.085 4.085 24 C -0.159 4.159 25 C 0.100 3.900 26 F -0.138 7.138 27 C 0.692 3.308 28 O -0.632 6.632 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.027 0.973 32 H 0.262 0.738 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.030 0.970 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.114 0.886 44 H 0.121 0.879 45 H 0.147 0.853 46 H 0.163 0.837 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.446 -2.105 -26.663 27.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.117 3.883 3 H 0.011 0.989 4 C -0.552 4.552 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.786 3.214 9 H -0.208 1.208 10 H -0.205 1.205 11 H -0.191 1.191 12 N -0.293 5.293 13 C -0.104 4.104 14 C 0.113 3.887 15 N -0.362 5.362 16 C -0.034 4.034 17 C -0.025 4.025 18 N -0.366 5.366 19 C 0.070 3.930 20 C -0.157 4.157 21 C -0.107 4.107 22 C -0.154 4.154 23 C -0.102 4.102 24 C -0.178 4.178 25 C 0.080 3.920 26 F -0.116 7.116 27 C 0.394 3.606 28 O -0.512 6.512 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.120 0.880 41 H 0.114 0.886 42 H 0.097 0.903 43 H 0.132 0.868 44 H 0.139 0.861 45 H 0.165 0.835 46 H 0.181 0.819 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.091 -1.595 -26.083 27.077 hybrid contribution -0.582 -0.178 1.295 1.431 sum 6.508 -1.773 -24.788 25.690 Atomic orbital electron populations 1.22205 0.99159 0.99840 1.00265 1.18963 0.90570 0.92156 0.86596 0.98878 1.21324 1.30530 1.12400 0.90931 0.92896 1.25701 0.95415 0.95861 1.01844 1.70014 1.37883 1.24118 1.24042 0.85521 0.77832 0.79099 0.78940 1.20849 1.20502 1.19088 1.61823 1.60663 1.04115 1.02655 1.22249 0.96655 0.89995 1.01483 1.21325 0.88773 0.95761 0.82888 1.47490 1.18051 1.37809 1.32864 1.22704 0.98982 0.92033 0.89705 1.22618 0.90526 0.91251 0.98057 1.47216 1.18894 1.37608 1.32860 1.20036 0.81509 0.95925 0.95574 1.20388 1.04652 0.96699 0.94011 1.21180 0.97623 0.91789 1.00060 1.21534 1.00044 1.00290 0.93488 1.21428 0.95943 0.96129 0.96747 1.21458 1.03353 0.92629 1.00342 1.17652 1.01875 0.79056 0.93381 1.91453 1.91974 1.35350 1.92851 1.16281 0.81511 0.81896 0.80940 1.90864 1.73141 1.34027 1.53212 0.93858 0.91999 0.95360 0.92925 0.91030 0.92919 0.95178 0.92731 0.90490 0.88048 0.88980 0.88042 0.88644 0.90276 0.86774 0.86059 0.83506 0.81914 0.82499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.48 8.26 71.98 0.59 -6.89 16 2 C 0.22 11.92 2.27 44.17 0.10 12.02 16 3 H -0.01 -0.41 7.80 -2.39 -0.02 -0.43 16 4 C -0.51 -29.46 7.91 25.60 0.20 -29.26 16 5 H 0.05 3.06 7.12 -2.91 -0.02 3.04 16 6 C 0.01 0.58 5.30 84.65 0.45 1.03 16 7 N -0.92 -54.57 11.32 21.45 0.24 -54.32 16 8 Si 0.96 45.28 29.54 68.60 2.03 47.30 16 9 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 N -0.57 -25.33 4.80 -913.87 -4.39 -29.71 16 13 C 0.04 1.62 8.61 127.69 1.10 2.72 16 14 C 0.32 12.53 5.04 170.81 0.86 13.39 16 15 N -0.62 -20.92 3.18 -848.99 -2.70 -23.62 16 16 C 0.09 1.86 7.44 86.64 0.64 2.51 16 17 C 0.10 1.85 7.38 86.65 0.64 2.49 16 18 N -0.63 -17.31 2.94 -842.43 -2.48 -19.79 16 19 C 0.19 4.54 5.81 85.64 0.50 5.04 16 20 C -0.16 -3.48 5.47 -19.82 -0.11 -3.59 16 21 C -0.09 -1.98 9.67 22.26 0.22 -1.76 16 22 C -0.14 -2.32 10.04 22.27 0.22 -2.09 16 23 C -0.08 -1.14 10.04 22.26 0.22 -0.92 16 24 C -0.16 -2.39 10.03 22.31 0.22 -2.16 16 25 C 0.10 1.92 7.25 22.38 0.16 2.09 16 26 F -0.14 -2.51 14.89 44.97 0.67 -1.84 16 27 C 0.69 26.16 8.30 179.47 1.49 27.65 16 28 O -0.63 -30.62 17.04 -3.98 -0.07 -30.69 16 29 H 0.04 1.95 6.41 -2.39 -0.02 1.94 16 30 H 0.06 3.36 6.07 -2.39 -0.01 3.34 16 31 H 0.03 1.18 7.31 -2.39 -0.02 1.17 16 32 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 33 H 0.07 2.15 6.09 -2.39 -0.01 2.14 16 34 H 0.05 2.17 6.76 -2.38 -0.02 2.15 16 35 H 0.03 1.03 6.38 -2.38 -0.02 1.02 16 36 H 0.05 2.47 7.42 -2.39 -0.02 2.45 16 37 H 0.08 2.51 7.57 -2.39 -0.02 2.49 16 38 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.09 1.75 6.38 -2.39 -0.02 1.73 16 40 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.10 1.52 6.57 -2.39 -0.02 1.50 16 42 H 0.08 2.15 7.72 -2.38 -0.02 2.13 16 43 H 0.11 2.04 8.07 -2.39 -0.02 2.02 16 44 H 0.12 3.01 8.00 -2.91 -0.02 2.98 16 45 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 46 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 47 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -77.05 378.30 1.81 -75.24 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.98 Total: 15.19 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: 7.52 Total: 22.24 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -9.32 Total: -127.44 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.07 Total: -30.69 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.67 Total: -1.84 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -77.05 1.81 -75.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902115220.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.437 kcal (2) G-P(sol) polarization free energy of solvation -77.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds