Wall clock time and date at job start Tue Mar 31 2020 20:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47313 * 2 1 4 4 C 1.34770 * 119.99631 * 89.97879 * 3 2 1 5 5 O 1.21280 * 120.00692 * 6.16124 * 4 3 2 6 6 C 1.50705 * 119.99887 * 186.16224 * 4 3 2 7 7 H 1.09009 * 109.44045 * 41.27589 * 6 4 3 8 8 C 1.53117 * 109.44472 * 161.20083 * 6 4 3 9 9 C 1.53471 * 109.38000 * 189.77319 * 8 6 4 10 10 C 1.50799 * 108.07593 * 311.10529 * 9 8 6 11 11 N 1.29607 * 128.73239 * 195.97645 * 10 9 8 12 12 N 1.28877 * 109.79481 * 179.84816 * 11 10 9 13 13 C 1.31378 * 109.92887 * 0.02562 * 12 11 10 14 14 O 1.35528 * 126.57962 * 180.30369 * 13 12 11 15 15 N 1.35433 * 106.84369 * 0.04090 * 13 12 11 16 16 C 1.46204 * 129.14299 * 179.82345 * 15 13 12 17 17 C 1.46497 * 120.00079 * 269.98026 * 3 2 1 18 18 C 1.53946 * 113.74516 * 32.00045 * 17 3 2 19 19 N 1.47810 * 86.03770 * 222.08631 * 18 17 3 20 20 C 1.36934 * 134.45448 * 204.64488 * 19 18 17 21 21 H 1.08000 * 119.99918 * 179.86661 * 20 19 18 22 22 C 1.38812 * 120.00062 * 359.86280 * 20 19 18 23 23 N 1.31616 * 119.99927 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99991 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47492 * 60.00143 * 24 22 20 26 26 H 1.48505 * 109.47138 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47097 * 299.99879 * 24 22 20 28 28 C 1.47576 * 91.05184 * 24.54766 * 19 18 17 29 29 H 1.09000 * 109.46704 * 304.72262 * 1 2 3 30 30 H 1.09000 * 109.47268 * 64.72032 * 1 2 3 31 31 H 1.09001 * 109.47077 * 184.72671 * 1 2 3 32 32 H 1.09006 * 109.47174 * 240.00186 * 2 1 3 33 33 H 1.08994 * 109.47522 * 120.00630 * 2 1 3 34 34 H 1.09000 * 109.48859 * 69.79633 * 8 6 4 35 35 H 1.09001 * 109.48746 * 309.74320 * 8 6 4 36 36 H 1.09000 * 109.74196 * 191.46469 * 9 8 6 37 37 H 1.09002 * 109.74230 * 70.75138 * 9 8 6 38 38 H 0.96699 * 114.00275 * 269.68846 * 14 13 12 39 39 H 1.08999 * 109.60290 * 316.83478 * 16 15 13 40 40 H 1.09003 * 109.60078 * 77.31912 * 16 15 13 41 41 H 1.09004 * 112.94511 * 163.59572 * 17 3 2 42 42 H 1.09001 * 113.76529 * 336.34863 * 18 17 3 43 43 H 1.09000 * 113.76764 * 107.74026 * 18 17 3 44 44 H 0.97004 * 119.99979 * 179.97438 * 23 22 20 45 45 H 1.09000 * 113.77329 * 221.15289 * 28 19 18 46 46 H 1.08998 * 113.76943 * 89.75691 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2426 2.0166 1.1672 5 8 2.1481 1.4124 2.2145 6 6 2.6107 3.4780 1.1710 7 1 2.0032 4.0071 0.4366 8 6 2.3545 4.0646 2.5619 9 6 2.4938 5.5919 2.5041 10 6 3.7853 5.9174 1.7969 11 7 4.4351 7.0385 1.7706 12 7 5.4992 6.9094 1.0551 13 6 5.5776 5.6848 0.5859 14 8 6.5610 5.1822 -0.1997 15 7 4.4901 5.0193 1.0426 16 6 4.0935 3.6311 0.8121 17 6 2.2630 2.0717 -1.2687 18 6 1.3176 1.6370 -2.4033 19 7 2.5147 1.6582 -3.2702 20 6 2.7223 1.8123 -4.6149 21 1 3.7264 1.7907 -5.0122 22 6 1.6424 1.9963 -5.4673 23 7 0.4188 2.0230 -4.9831 24 14 1.9256 2.2059 -7.3018 25 1 2.6051 0.9997 -7.8389 26 1 0.6204 2.3856 -7.9869 27 1 2.7766 3.3998 -7.5381 28 6 3.3957 1.4490 -2.1049 29 1 -0.3633 0.5854 0.8447 30 1 -0.3634 0.4388 -0.9292 31 1 -0.3633 -1.0242 0.0847 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.0806 3.6596 3.2668 35 1 1.3473 3.8034 2.8868 36 1 2.5153 5.9981 3.5153 37 1 1.6550 6.0175 1.9533 38 1 6.3955 5.2792 -1.1475 39 1 4.2441 3.3771 -0.2372 40 1 4.6916 2.9708 1.4401 41 1 2.3445 3.1527 -1.1553 42 1 0.8932 0.6426 -2.2647 43 1 0.5711 2.3869 -2.6646 44 1 -0.3358 2.1520 -5.5788 45 1 4.3053 2.0492 -2.1284 46 1 3.5830 0.3994 -1.8784 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950653061.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:56 Heat of formation + Delta-G solvation = 72.151720 kcal Electronic energy + Delta-G solvation = -30457.125385 eV Core-core repulsion = 26386.093135 eV Total energy + Delta-G solvation = -4071.032250 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.38510 -40.56220 -38.29361 -37.84788 -36.98089 -34.78371 -33.50763 -32.28128 -31.80188 -30.21248 -28.84051 -27.68519 -25.51585 -25.03440 -24.06509 -23.59470 -22.55391 -22.46845 -20.47191 -19.98932 -19.08389 -18.39960 -17.85515 -17.09097 -16.92163 -16.34332 -15.94929 -15.68045 -15.09023 -15.00940 -14.61733 -14.52619 -14.39745 -14.02964 -13.87356 -13.52003 -12.90995 -12.78668 -12.64654 -12.59388 -12.34133 -12.02740 -11.92040 -11.85124 -11.76476 -11.46249 -11.41954 -11.25114 -11.05266 -10.91973 -10.77191 -10.60271 -10.37741 -10.33755 -10.26190 -9.77638 -9.75640 -9.15687 -9.00863 -8.46286 -7.14605 -5.98970 -3.33103 1.42724 1.89048 2.45337 2.59179 2.93065 3.26825 3.31868 3.32944 3.54953 3.92759 4.04756 4.17390 4.21098 4.31864 4.68274 4.71687 4.87286 4.89841 4.96777 5.06121 5.14046 5.20961 5.25702 5.32424 5.41859 5.42723 5.50738 5.55682 5.63189 5.65836 5.72962 5.75623 5.82322 5.99233 6.03560 6.13138 6.22024 6.31828 6.39831 6.60413 6.90621 6.95976 7.14346 7.26750 7.49155 7.74142 8.09682 8.49392 8.81649 9.48360 10.31173 11.17856 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010340 B = 0.004148 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.183004 B = 6749.188776 C = 8592.727432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.111 3.889 3 N -0.590 5.590 4 C 0.524 3.476 5 O -0.540 6.540 6 C -0.125 4.125 7 H 0.111 0.889 8 C -0.106 4.106 9 C -0.033 4.033 10 C 0.191 3.809 11 N -0.276 5.276 12 N -0.290 5.290 13 C 0.356 3.644 14 O -0.436 6.436 15 N -0.479 5.479 16 C 0.117 3.883 17 C 0.071 3.929 18 C 0.157 3.843 19 N -0.604 5.604 20 C -0.230 4.230 21 H 0.082 0.918 22 C -0.001 4.001 23 N -0.919 5.919 24 Si 0.914 3.086 25 H -0.284 1.284 26 H -0.288 1.288 27 H -0.283 1.283 28 C 0.108 3.892 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.410 0.590 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.043 0.957 43 H 0.078 0.922 44 H 0.257 0.743 45 H 0.044 0.956 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.226 1.274 12.673 12.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 N -0.321 5.321 4 C 0.310 3.690 5 O -0.418 6.418 6 C -0.146 4.146 7 H 0.129 0.871 8 C -0.144 4.144 9 C -0.072 4.072 10 C -0.076 4.076 11 N -0.118 5.118 12 N -0.141 5.141 13 C 0.052 3.948 14 O -0.236 6.236 15 N -0.182 5.182 16 C -0.006 4.006 17 C -0.033 4.033 18 C 0.031 3.969 19 N -0.331 5.331 20 C -0.358 4.358 21 H 0.099 0.901 22 C -0.198 4.198 23 N -0.565 5.565 24 Si 0.743 3.257 25 H -0.210 1.210 26 H -0.214 1.214 27 H -0.209 1.209 28 C -0.019 4.019 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.268 0.732 39 H 0.125 0.875 40 H 0.115 0.885 41 H 0.123 0.877 42 H 0.060 0.940 43 H 0.096 0.904 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.844 2.197 13.518 13.987 hybrid contribution -0.244 -1.402 -2.192 2.614 sum 2.600 0.795 11.326 11.647 Atomic orbital electron populations 1.22240 0.95591 1.02078 1.02910 1.21414 0.94664 0.81954 1.03074 1.48212 1.63739 1.14301 1.05858 1.20009 0.77396 0.87804 0.83832 1.90689 1.52429 1.67337 1.31334 1.21712 0.95889 0.95802 1.01223 0.87137 1.21556 1.05034 0.93032 0.94781 1.20332 0.89545 0.96367 1.00995 1.24657 0.98130 0.86309 0.98514 1.74008 1.01453 1.19844 1.16499 1.74851 1.14225 1.11809 1.13176 1.21829 0.85590 0.87976 0.99420 1.84892 1.36579 1.80152 1.22020 1.46607 1.19151 1.12803 1.39638 1.21958 0.95193 0.79031 1.04453 1.24269 1.00795 0.96826 0.81399 1.22760 0.91421 0.99449 0.83234 1.45739 1.01818 1.83831 1.01756 1.18917 0.93176 1.43670 0.80002 0.90064 1.24789 0.95095 1.01667 0.98297 1.69774 0.97481 1.55015 1.34227 0.86186 0.76957 0.78138 0.84386 1.21013 1.21394 1.20923 1.22992 0.93945 0.97737 0.87215 0.92737 0.91124 0.91890 0.89924 0.90180 0.90030 0.88711 0.87455 0.88056 0.73208 0.87548 0.88464 0.87655 0.93966 0.90362 0.93302 0.93743 0.94259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 9.93 37.16 0.37 -1.77 16 2 C 0.11 1.45 5.32 -4.04 -0.02 1.43 16 3 N -0.59 -7.82 2.69 -167.90 -0.45 -8.27 16 4 C 0.52 6.64 6.82 -10.99 -0.07 6.56 16 5 O -0.54 -8.16 15.70 5.56 0.09 -8.07 16 6 C -0.12 -1.27 1.68 -91.54 -0.15 -1.42 16 7 H 0.11 1.10 6.75 -51.92 -0.35 0.75 16 8 C -0.11 -0.93 4.59 -26.43 -0.12 -1.05 16 9 C -0.03 -0.27 6.34 -27.59 -0.17 -0.45 16 10 C 0.19 2.32 7.78 -154.44 -1.20 1.12 16 11 N -0.28 -4.15 12.17 32.93 0.40 -3.74 16 12 N -0.29 -4.55 12.24 29.53 0.36 -4.19 16 13 C 0.36 4.76 9.30 -89.28 -0.83 3.93 16 14 O -0.44 -4.77 13.64 -18.28 -0.25 -5.02 16 15 N -0.48 -5.69 3.16 -115.38 -0.36 -6.06 16 16 C 0.12 1.20 6.07 -4.03 -0.02 1.18 16 17 C 0.07 1.07 3.32 -70.14 -0.23 0.83 16 18 C 0.16 3.11 6.24 -2.84 -0.02 3.09 16 19 N -0.60 -13.45 3.70 -177.88 -0.66 -14.10 16 20 C -0.23 -5.84 10.70 -15.06 -0.16 -6.00 16 21 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 22 C 0.00 -0.03 5.50 -17.43 -0.10 -0.12 16 23 N -0.92 -24.96 11.39 55.49 0.63 -24.33 16 24 Si 0.91 20.62 29.55 -169.99 -5.02 15.60 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 C 0.11 1.83 8.28 -2.97 -0.02 1.80 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 1.00 6.10 -51.93 -0.32 0.68 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.13 6.41 -51.93 -0.33 0.80 16 33 H 0.08 1.03 7.35 -51.93 -0.38 0.65 16 34 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 35 H 0.09 0.79 8.08 -51.93 -0.42 0.37 16 36 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.41 2.61 9.06 45.56 0.41 3.03 16 39 H 0.11 1.07 6.24 -51.93 -0.32 0.75 16 40 H 0.10 0.99 8.12 -51.93 -0.42 0.57 16 41 H 0.11 1.47 5.39 -51.93 -0.28 1.19 16 42 H 0.04 0.85 5.04 -51.93 -0.26 0.59 16 43 H 0.08 1.77 7.16 -51.93 -0.37 1.40 16 44 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 45 H 0.04 0.69 7.85 -51.93 -0.41 0.28 16 46 H 0.04 0.66 7.32 -51.93 -0.38 0.28 16 LS Contribution 365.13 15.07 5.50 5.50 Total: -1.00 -32.67 365.13 -8.02 -40.69 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -5.49 Total: 2.87 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: -2.77 Total: 9.13 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -0.08 Total: -60.69 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.16 Total: -13.09 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.67 -8.02 -40.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950653061.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.840 kcal (2) G-P(sol) polarization free energy of solvation -32.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds