Wall clock time and date at job start Tue Mar 31 2020 20:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47313 * 2 1 4 4 C 1.34770 * 119.99631 * 89.97879 * 3 2 1 5 5 O 1.21280 * 120.00692 * 6.16124 * 4 3 2 6 6 C 1.50705 * 119.99887 * 186.16224 * 4 3 2 7 7 H 1.09009 * 109.44045 * 41.27589 * 6 4 3 8 8 C 1.53117 * 109.44472 * 161.20083 * 6 4 3 9 9 C 1.53471 * 109.38000 * 189.77319 * 8 6 4 10 10 C 1.50799 * 108.07593 * 311.10529 * 9 8 6 11 11 N 1.29607 * 128.73239 * 195.97645 * 10 9 8 12 12 N 1.28877 * 109.79481 * 179.84816 * 11 10 9 13 13 C 1.31378 * 109.92887 * 0.02562 * 12 11 10 14 14 O 1.35528 * 126.57962 * 180.30369 * 13 12 11 15 15 N 1.35433 * 106.84369 * 0.04090 * 13 12 11 16 16 C 1.46204 * 129.14299 * 179.82345 * 15 13 12 17 17 C 1.46497 * 120.00079 * 269.98026 * 3 2 1 18 18 C 1.53946 * 113.74516 * 32.00045 * 17 3 2 19 19 N 1.47810 * 86.03770 * 222.08631 * 18 17 3 20 20 C 1.36934 * 134.45448 * 204.64488 * 19 18 17 21 21 H 1.08000 * 119.99918 * 179.86661 * 20 19 18 22 22 C 1.38812 * 120.00062 * 359.86280 * 20 19 18 23 23 N 1.31616 * 119.99927 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99991 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47492 * 60.00143 * 24 22 20 26 26 H 1.48505 * 109.47138 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47097 * 299.99879 * 24 22 20 28 28 C 1.47576 * 91.05184 * 24.54766 * 19 18 17 29 29 H 1.09000 * 109.46704 * 304.72262 * 1 2 3 30 30 H 1.09000 * 109.47268 * 64.72032 * 1 2 3 31 31 H 1.09001 * 109.47077 * 184.72671 * 1 2 3 32 32 H 1.09006 * 109.47174 * 240.00186 * 2 1 3 33 33 H 1.08994 * 109.47522 * 120.00630 * 2 1 3 34 34 H 1.09000 * 109.48859 * 69.79633 * 8 6 4 35 35 H 1.09001 * 109.48746 * 309.74320 * 8 6 4 36 36 H 1.09000 * 109.74196 * 191.46469 * 9 8 6 37 37 H 1.09002 * 109.74230 * 70.75138 * 9 8 6 38 38 H 0.96699 * 114.00275 * 269.68846 * 14 13 12 39 39 H 1.08999 * 109.60290 * 316.83478 * 16 15 13 40 40 H 1.09003 * 109.60078 * 77.31912 * 16 15 13 41 41 H 1.09004 * 112.94511 * 163.59572 * 17 3 2 42 42 H 1.09001 * 113.76529 * 336.34863 * 18 17 3 43 43 H 1.09000 * 113.76764 * 107.74026 * 18 17 3 44 44 H 0.97004 * 119.99979 * 179.97438 * 23 22 20 45 45 H 1.09000 * 113.77329 * 221.15289 * 28 19 18 46 46 H 1.08998 * 113.76943 * 89.75691 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2426 2.0166 1.1672 5 8 2.1481 1.4124 2.2145 6 6 2.6107 3.4780 1.1710 7 1 2.0032 4.0071 0.4366 8 6 2.3545 4.0646 2.5619 9 6 2.4938 5.5919 2.5041 10 6 3.7853 5.9174 1.7969 11 7 4.4351 7.0385 1.7706 12 7 5.4992 6.9094 1.0551 13 6 5.5776 5.6848 0.5859 14 8 6.5610 5.1822 -0.1997 15 7 4.4901 5.0193 1.0426 16 6 4.0935 3.6311 0.8121 17 6 2.2630 2.0717 -1.2687 18 6 1.3176 1.6370 -2.4033 19 7 2.5147 1.6582 -3.2702 20 6 2.7223 1.8123 -4.6149 21 1 3.7264 1.7907 -5.0122 22 6 1.6424 1.9963 -5.4673 23 7 0.4188 2.0230 -4.9831 24 14 1.9256 2.2059 -7.3018 25 1 2.6051 0.9997 -7.8389 26 1 0.6204 2.3856 -7.9869 27 1 2.7766 3.3998 -7.5381 28 6 3.3957 1.4490 -2.1049 29 1 -0.3633 0.5854 0.8447 30 1 -0.3634 0.4388 -0.9292 31 1 -0.3633 -1.0242 0.0847 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.0806 3.6596 3.2668 35 1 1.3473 3.8034 2.8868 36 1 2.5153 5.9981 3.5153 37 1 1.6550 6.0175 1.9533 38 1 6.3955 5.2792 -1.1475 39 1 4.2441 3.3771 -0.2372 40 1 4.6916 2.9708 1.4401 41 1 2.3445 3.1527 -1.1553 42 1 0.8932 0.6426 -2.2647 43 1 0.5711 2.3869 -2.6646 44 1 -0.3358 2.1520 -5.5788 45 1 4.3053 2.0492 -2.1284 46 1 3.5830 0.3994 -1.8784 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950653061.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:55 Heat of formation + Delta-G solvation = 48.343524 kcal Electronic energy + Delta-G solvation = -30458.157785 eV Core-core repulsion = 26386.093135 eV Total energy + Delta-G solvation = -4072.064650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.33800 -41.68504 -39.60682 -38.72293 -37.93366 -36.07831 -34.34853 -34.00394 -32.85617 -31.25868 -29.78169 -29.37469 -26.71753 -26.22450 -25.23909 -24.89806 -23.56075 -23.41449 -21.76599 -21.02811 -19.96516 -19.52520 -19.03828 -18.53898 -18.02600 -17.36079 -17.12409 -16.72838 -16.53985 -16.14488 -15.67786 -15.45133 -15.43140 -15.29259 -14.96482 -14.72583 -14.26183 -13.84693 -13.72801 -13.55355 -13.44812 -13.26184 -13.15974 -12.92869 -12.89883 -12.81751 -12.68224 -12.50239 -12.26756 -12.14291 -12.04557 -11.98590 -11.86124 -11.49068 -11.32713 -11.25242 -10.93198 -10.80358 -10.12324 -9.66037 -8.93990 -7.92628 -5.25326 0.52542 0.97500 1.43911 1.48171 1.48722 1.55008 1.60773 1.85006 2.47335 2.67670 3.10090 3.12512 3.27196 3.33617 3.41732 3.51078 3.68842 3.82369 3.90562 4.04285 4.11197 4.20465 4.27283 4.34054 4.36966 4.42196 4.54292 4.55321 4.64052 4.78192 4.82108 4.83653 4.88340 4.95054 4.98000 5.01657 5.13183 5.22517 5.28837 5.39387 5.48964 5.52448 5.59313 5.90363 6.35880 6.37919 6.90442 7.03501 7.50951 7.59571 8.50646 9.23655 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010340 B = 0.004148 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.183004 B = 6749.188776 C = 8592.727432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.110 3.890 3 N -0.589 5.589 4 C 0.531 3.469 5 O -0.559 6.559 6 C -0.120 4.120 7 H 0.118 0.882 8 C -0.099 4.099 9 C -0.028 4.028 10 C 0.197 3.803 11 N -0.311 5.311 12 N -0.329 5.329 13 C 0.357 3.643 14 O -0.439 6.439 15 N -0.478 5.478 16 C 0.120 3.880 17 C 0.108 3.892 18 C 0.155 3.845 19 N -0.635 5.635 20 C -0.232 4.232 21 H 0.085 0.915 22 C -0.057 4.057 23 N -0.948 5.948 24 Si 0.970 3.030 25 H -0.280 1.280 26 H -0.297 1.297 27 H -0.276 1.276 28 C 0.111 3.889 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.126 0.874 37 H 0.120 0.880 38 H 0.429 0.571 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.122 0.878 42 H 0.037 0.963 43 H 0.045 0.955 44 H 0.249 0.751 45 H 0.067 0.933 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.781 1.085 13.632 13.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.012 4.012 3 N -0.320 5.320 4 C 0.318 3.682 5 O -0.437 6.437 6 C -0.141 4.141 7 H 0.136 0.864 8 C -0.137 4.137 9 C -0.067 4.067 10 C -0.071 4.071 11 N -0.152 5.152 12 N -0.180 5.180 13 C 0.052 3.948 14 O -0.242 6.242 15 N -0.181 5.181 16 C -0.003 4.003 17 C 0.003 3.997 18 C 0.029 3.971 19 N -0.362 5.362 20 C -0.360 4.360 21 H 0.103 0.897 22 C -0.251 4.251 23 N -0.597 5.597 24 Si 0.799 3.201 25 H -0.206 1.206 26 H -0.224 1.224 27 H -0.202 1.202 28 C -0.015 4.015 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.144 0.856 37 H 0.138 0.862 38 H 0.290 0.710 39 H 0.129 0.871 40 H 0.120 0.880 41 H 0.140 0.860 42 H 0.055 0.945 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.085 0.915 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.434 2.004 14.495 15.030 hybrid contribution -0.376 -1.428 -2.432 2.845 sum 3.057 0.577 12.063 12.458 Atomic orbital electron populations 1.22158 0.95260 1.02932 1.01735 1.21433 0.94896 0.81867 1.02966 1.48136 1.64019 1.14397 1.05492 1.20278 0.76433 0.88496 0.82960 1.90693 1.53150 1.68060 1.31805 1.21706 0.95921 0.93959 1.02546 0.86413 1.21526 1.05459 0.93129 0.93589 1.20534 0.88172 0.96032 1.01937 1.25345 0.98603 0.85590 0.97532 1.73925 1.02058 1.21471 1.17707 1.74747 1.15256 1.13419 1.14567 1.21888 0.85928 0.87717 0.99305 1.84860 1.36112 1.79799 1.23395 1.46665 1.18771 1.13193 1.39458 1.22003 0.95165 0.78278 1.04843 1.23682 0.97612 0.97441 0.80928 1.22663 0.91021 0.98341 0.85065 1.46046 1.04152 1.84033 1.01941 1.19273 0.93242 1.41708 0.81808 0.89686 1.25481 0.95109 1.02754 1.01753 1.69944 0.97896 1.57021 1.34814 0.85284 0.76274 0.78184 0.80372 1.20647 1.22366 1.20239 1.23145 0.94679 0.98565 0.85131 0.92724 0.93086 0.90324 0.90641 0.89558 0.90510 0.87714 0.85566 0.86230 0.70987 0.87077 0.88047 0.86004 0.94549 0.93649 0.94229 0.91529 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 9.93 71.98 0.71 -3.20 16 2 C 0.11 2.72 5.32 86.38 0.46 3.17 16 3 N -0.59 -14.40 2.69 -803.52 -2.16 -16.55 16 4 C 0.53 12.05 6.82 87.66 0.60 12.65 16 5 O -0.56 -15.41 15.70 -3.03 -0.05 -15.46 16 6 C -0.12 -2.09 1.68 -11.39 -0.02 -2.11 16 7 H 0.12 1.96 6.75 -2.38 -0.02 1.94 16 8 C -0.10 -1.44 4.59 30.79 0.14 -1.30 16 9 C -0.03 -0.38 6.34 30.04 0.19 -0.19 16 10 C 0.20 4.40 7.78 137.84 1.07 5.48 16 11 N -0.31 -9.05 12.17 -49.73 -0.61 -9.66 16 12 N -0.33 -10.18 12.24 -173.87 -2.13 -12.31 16 13 C 0.36 9.06 9.30 179.88 1.67 10.73 16 14 O -0.44 -8.85 13.64 -88.32 -1.20 -10.06 16 15 N -0.48 -10.37 3.16 -630.24 -1.99 -12.36 16 16 C 0.12 2.13 6.07 86.54 0.53 2.66 16 17 C 0.11 3.03 3.32 46.75 0.16 3.19 16 18 C 0.15 6.12 6.24 86.44 0.54 6.65 16 19 N -0.63 -27.77 3.70 -716.70 -2.65 -30.42 16 20 C -0.23 -11.64 10.70 84.03 0.90 -10.74 16 21 H 0.09 4.07 7.83 -2.91 -0.02 4.05 16 22 C -0.06 -2.99 5.50 84.86 0.47 -2.52 16 23 N -0.95 -52.56 11.39 21.65 0.25 -52.31 16 24 Si 0.97 42.54 29.55 68.60 2.03 44.57 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 26 H -0.30 -13.34 7.11 99.48 0.71 -12.63 16 27 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 28 C 0.11 3.50 8.28 86.49 0.72 4.22 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.43 6.10 -2.39 -0.01 1.42 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 1.97 6.41 -2.38 -0.02 1.96 16 33 H 0.09 2.05 7.35 -2.39 -0.02 2.04 16 34 H 0.08 1.24 8.12 -2.39 -0.02 1.22 16 35 H 0.10 1.39 8.08 -2.39 -0.02 1.37 16 36 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.43 4.65 9.06 -74.06 -0.67 3.98 16 39 H 0.11 1.88 6.24 -2.39 -0.01 1.87 16 40 H 0.10 1.77 8.12 -2.39 -0.02 1.75 16 41 H 0.12 3.08 5.39 -2.38 -0.01 3.07 16 42 H 0.04 1.48 5.04 -2.39 -0.01 1.47 16 43 H 0.05 2.09 7.16 -2.39 -0.02 2.08 16 44 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 45 H 0.07 1.84 7.85 -2.39 -0.02 1.82 16 46 H 0.05 1.44 7.32 -2.39 -0.02 1.42 16 Total: -1.00 -70.97 365.13 -0.02 -70.99 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.36 Total: 14.87 kcal Atomic # 6 Polarization: 20.56 SS G_CDS: 8.13 Total: 28.70 kcal Atomic # 7 Polarization: -124.32 SS G_CDS: -9.29 Total: -133.61 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -1.25 Total: -25.51 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -70.97 -0.02 -70.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950653061.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.331 kcal (2) G-P(sol) polarization free energy of solvation -70.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds